Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020601.1

Orthogroup ID

OG0004455

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2124

Gene Structure 2124 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020601.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ccaggtcatggttcccttattgagtatggaaggctcctccggtatacaccttataaagactattatggaaatgattcctttgtgtacacaatgtctgatataaacggcaatcttgctactgcttttgtaaacatatctgttctcaccatcccaccacaatttgtttcttttccaagtgaattgcaagctactgaaggcgagattaatccaaaatttggtggtttttctgggtttatgataagatattccgacatgatggagagcatctctgttaatcttagtgcgcaatctgggacagtatttctgtctccgatgctaatgcaattctgggagcccatttggaatggactttctgtgtacaaagaggatggaggagtgaaggggttgatattacaaggcagtgtggaagtaatcaattttgcccttaagtcaatacagtactatggtaacgagaacttctgtggctatgatactattcggctcactacgaggaataggaatggagtaaatgacttgcatattccagtttttgtggaacctatcaatgatcctccctttattcatgcacctgagtttatcattctgaaaagtaatgaaaatgggtcactgatatatgacagagaaacagacaagtttgagttctatattggagacccagatcttcttgcgttccctggtaatgaatcccttttttcggtcatcttctctatggaagttaatgatggatatttggtaaccagagtgcccttacttgctgaggcttctgttaatctaataagaagaaggccgatgagttcacttgtgtctcgtggcttaggatcagctattgtcatcgagtccattatagtgttttcactgggagcagcactaatgtttttcacatgcaaatgtgcaactattcttgtaaatgaaagaagaaacagagcttccaggactccagctgacccagcaaatgcacatagtttcggcaaaggaactcagtggagtaaaagttttccagagaacgcaactcaccttactgcgtcttgttcaagtcccctgcttggcagccaacgtcccaactttcgacaacggtcctgccgtcaatctagaaatggggaatcaagcaaggcagcatataaggctactggtgaacgcattcagcagaatcctgcgactagttttaagcccttttgtgttgagaaggaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009987 GO:0016020 GO:0016021 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0044425 GO:0044459 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0051704 GO:0055046 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Filamin

Protein Analysis

396

Amino Acids

44.05

Weight (kDa)

6.31

Isoelectric Point (pI)

42.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004455)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49150 AT5G49150 AT5G49150 AT5G49150 AT5G49150 AT5G49150 AT5G49150 AT5G49150
fragaria_vesca	FvH4_4g18570
prunus_persica	Prupe.1G132400_v2.0.a1 Prupe.1G132400_v2.0.a1 Prupe.1G132400_v2.0.a1 Prupe.1G132400_v2.0.a1
pyrus_communis	pycom16g14000 pycom16g14010
rosa_chinensis	RchiOBHm_Chr4g0423171
rosa_laevigata	RLG00000007579
rosa_multiflora	Rmu_sc0000744.1_g000001 Rmu_sc0008829.1_g000002 Rmu_sc0020601.1_g000001
rosa_roxburghii	Rroxscaffold_5G00365330
rosa_rugosa	Rorug04G0184800 Rorug04G0184900
rosa_samantha	Rh4AG244300 Rh4AG244400 Rh4BG249500 Rh4BG249600 Rh4CG258600 Rh4CG258700 Rh4DG244300 Rh4DG244400
rosa_wichuraiana	Rw4G021050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	54
Acc16I	TGCGCA	1 cut(s)	285
AccB7I	CCANNNNNTGG	2 cut(s)	8, 215
AccI	GTMKAC	1 cut(s)	44
AclWI	GGATC	2 cut(s)	542, 826
AcsI	RAATTY	1 cut(s)	212
AcuI	CTGAAG	1 cut(s)	213
AfaI	GTAC	3 cut(s)	86, 359, 440
AfiI	CCNNNNNNNGG	4 cut(s)	8, 215, 694, 1043
AflII	CTTAAG	1 cut(s)	425
AgsI	TTSAA	1 cut(s)	1032
AhlI	ACTAGT	1 cut(s)	1157
AjnI	CCWGG	2 cut(s)	673, 929
AluBI	AGCT	4 cut(s)	188, 824, 926, 941
AluI	AGCT	4 cut(s)	188, 824, 926, 941
Alw26I	GTCTC	3 cut(s)	312, 645, 810
AlwI	GGATC	2 cut(s)	542, 826
AoxI	GGCC	1 cut(s)	785
ApeKI	GCWGC	3 cut(s)	863, 1047, 1112
ApoI	RAATTY	1 cut(s)	212
AseI	ATTAAT	1 cut(s)	204
Asp700I	GAANNNNTTC	2 cut(s)	73, 1137
AspLEI	GCGC	1 cut(s)	286
AspS9I	GGNCC	1 cut(s)	1074
AsuHPI	GGTGA	3 cut(s)	136, 1004, 1142
AvaII	GGWCC	1 cut(s)	1074
BaeGI	GKGCMC	1 cut(s)	747
BanII	GRGCYC	1 cut(s)	336
BauI	CACGAG	1 cut(s)	807
BbvCI	CCTCAGC	1 cut(s)	756
BbvI	GCAGC	3 cut(s)	875, 1059, 1124
BccI	CCATC	4 cut(s)	155, 250, 362, 716
BceAI	ACGGC	2 cut(s)	121, 1065
BcgI	CGANNNNNNTGC	2 cut(s)	301, 335
BciT130I	CCWGG	3 cut(s)	3, 675, 931
BcoDI	GTCTC	3 cut(s)	312, 645, 810
BcuI	ACTAGT	1 cut(s)	1157
BfaI	CTAG	2 cut(s)	1089, 1158
BfrI	CTTAAG	1 cut(s)	425
BglII	AGATCT	1 cut(s)	658
BisI	GCNGC	3 cut(s)	864, 1048, 1113
BlsI	GCNGC	3 cut(s)	865, 1049, 1114
BmcAI	AGTACT	1 cut(s)	440
Bme1390I	CCNGG	3 cut(s)	3, 675, 931
Bme18I	GGWCC	1 cut(s)	1074
BmgT120I	GGNCC	1 cut(s)	1074
BmiI	GGNNCC	4 cut(s)	13, 35, 333, 537
BmrFI	CCNGG	3 cut(s)	3, 675, 931
BmrI	ACTGGG	1 cut(s)	866
BmsI	GCATC	2 cut(s)	273, 303
BmuI	ACTGGG	1 cut(s)	866
BoxI	GACNNNNGTC	1 cut(s)	1072
BplI	GAGNNNNNCTC	2 cut(s)	251, 283
BpmI	CTGGAG	1 cut(s)	921
Bpu10I	CCTNAGC	2 cut(s)	756, 814
BsaI	GGTCTC	1 cut(s)	645
BsaJI	CCNNGG	1 cut(s)	673
BsaWI	WCCGGW	1 cut(s)	39
BsaXI	ACNNNNNCTCC	2 cut(s)	976, 1006
Bsc4I	CCNNNNNNNGG	4 cut(s)	8, 215, 694, 1043
Bse1I	ACTGG	3 cut(s)	524, 861, 1132
BseBI	CCWGG	3 cut(s)	3, 675, 931
BseDI	CCNNGG	1 cut(s)	673
BseGI	GGATG	2 cut(s)	147, 373
BseLI	CCNNNNNNNGG	4 cut(s)	8, 215, 694, 1043
BseMII	CTCAG	3 cut(s)	561, 747, 992
BseNI	ACTGG	3 cut(s)	524, 861, 1132
BseRI	GAGGAG	2 cut(s)	26, 387
BseSI	GKGCMC	1 cut(s)	747
BseXI	GCAGC	3 cut(s)	875, 1059, 1124
BseYI	CCCAGC	1 cut(s)	946
BshFI	GGCC	1 cut(s)	787
BsiSI	CCGG	1 cut(s)	40
BslFI	GGGAC	3 cut(s)	307, 1020, 1041
BslI	CCNNNNNNNGG	4 cut(s)	8, 215, 694, 1043
BsmAI	GTCTC	3 cut(s)	312, 645, 810
BsmFI	GGGAC	3 cut(s)	307, 1020, 1041
BsmI	GAATGC	1 cut(s)	1137
BsnI	GGCC	1 cut(s)	787
Bso31I	GGTCTC	1 cut(s)	645
Bsp1286I	GDGCHC	2 cut(s)	336, 747
Bsp1407I	TGTACA	2 cut(s)	84, 357
Bsp143I	GATC	3 cut(s)	547, 658, 818
BspANI	GGCC	1 cut(s)	787
BspCNI	CTCAG	3 cut(s)	562, 748, 991
BspLI	GGNNCC	4 cut(s)	13, 35, 333, 537
BspPI	GGATC	2 cut(s)	542, 826
BspTI	CTTAAG	1 cut(s)	425
BspTNI	GGTCTC	1 cut(s)	645
BsrGI	TGTACA	2 cut(s)	84, 357
BsrI	ACTGG	3 cut(s)	524, 861, 1132
BssECI	CCNNGG	1 cut(s)	673
BssMI	GATC	3 cut(s)	547, 658, 818
BssNAI	GTATAC	1 cut(s)	45
BssSI	CACGAG	1 cut(s)	807
Bst1107I	GTATAC	1 cut(s)	45
Bst2BI	CACGAG	1 cut(s)	807
Bst2UI	CCWGG	3 cut(s)	3, 675, 931
Bst4CI	ACNGT	3 cut(s)	298, 438, 1074
BstAFI	CTTAAG	1 cut(s)	425
BstAUI	TGTACA	2 cut(s)	84, 357
BstC8I	GCNNGC	1 cut(s)	186
BstDEI	CTNAG	5 cut(s)	278, 570, 756, 814, 978
BstEII	GGTNACC	1 cut(s)	733
BstF5I	GGATG	2 cut(s)	147, 373
BstHHI	GCGC	1 cut(s)	286
BstKTI	GATC	3 cut(s)	550, 661, 821
BstMAI	GTCTC	3 cut(s)	312, 645, 810
BstMBI	GATC	3 cut(s)	547, 658, 818
BstMWI	GCNNNNNNNGC	2 cut(s)	947, 1121
BstNI	CCWGG	3 cut(s)	3, 675, 931
BstNSI	RCATGY	1 cut(s)	885
BstPAI	GACNNNNGTC	1 cut(s)	1072
BstPI	GGTNACC	1 cut(s)	733
BstSCI	CCNGG	2 cut(s)	673, 929
BstSLI	GKGCMC	1 cut(s)	747
BstV1I	GCAGC	3 cut(s)	875, 1059, 1124
BstX2I	RGATCY	1 cut(s)	658
BstYI	RGATCY	1 cut(s)	658
BstZ17I	GTATAC	1 cut(s)	45
BsuRI	GGCC	1 cut(s)	787
BtsCI	GGATG	2 cut(s)	147, 373
BtsI	GCAGTG	1 cut(s)	406
BtsIMutI	CAGTG	4 cut(s)	406, 605, 854, 986
Cac8I	GCNNGC	1 cut(s)	186
CfoI	GCGC	1 cut(s)	286
Cfr13I	GGNCC	1 cut(s)	1074
CseI	GACGC	1 cut(s)	1011
Csp6I	GTAC	3 cut(s)	85, 358, 439
CviAII	CATG	4 cut(s)	8, 253, 563, 882
CviQI	GTAC	3 cut(s)	85, 358, 439
DdeI	CTNAG	5 cut(s)	278, 570, 756, 814, 978
DpnI	GATC	3 cut(s)	549, 660, 820
DpnII	GATC	3 cut(s)	547, 658, 818
Eco24I	GRGCYC	1 cut(s)	336
Eco31I	GGTCTC	1 cut(s)	645
Eco47I	GGWCC	1 cut(s)	1074
Eco57I	CTGAAG	1 cut(s)	213
Eco91I	GGTNACC	1 cut(s)	733
EcoO65I	GGTNACC	1 cut(s)	733
EcoRII	CCWGG	2 cut(s)	673, 929
EcoT38I	GRGCYC	1 cut(s)	336
FaeI	CATG	4 cut(s)	11, 256, 566, 885
FaqI	GGGAC	3 cut(s)	307, 1020, 1041
FatI	CATG	4 cut(s)	7, 252, 562, 881
FblI	GTMKAC	1 cut(s)	44
Fnu4HI	GCNGC	3 cut(s)	864, 1048, 1113
FokI	GGATG	2 cut(s)	134, 380
FriOI	GRGCYC	1 cut(s)	336
Fsp4HI	GCNGC	3 cut(s)	864, 1048, 1113
FspBI	CTAG	2 cut(s)	1089, 1158
FspI	TGCGCA	1 cut(s)	285
GlaI	GCGC	1 cut(s)	285
GluI	GCNGC	3 cut(s)	864, 1048, 1113
GsaI	CCCAGC	1 cut(s)	950
GsuI	CTGGAG	1 cut(s)	921
HaeIII	GGCC	1 cut(s)	787
HapII	CCGG	1 cut(s)	40
HgaI	GACGC	1 cut(s)	1011
HhaI	GCGC	1 cut(s)	286
Hin1II	CATG	4 cut(s)	11, 256, 566, 885
Hin6I	GCGC	1 cut(s)	284
HinP1I	GCGC	1 cut(s)	284
HinfI	GANTC	6 cut(s)	74, 683, 836, 934, 1100, 1147
HpaII	CCGG	1 cut(s)	40
HphI	GGTGA	3 cut(s)	136, 1004, 1142
Hpy166II	GTNNAC	7 cut(s)	45, 85, 87, 130, 358, 797, 1133
Hpy188I	TCNGA	4 cut(s)	97, 250, 312, 585
Hpy188III	TCNNGA	2 cut(s)	998, 1089
Hpy8I	GTNNAC	7 cut(s)	45, 85, 87, 130, 358, 797, 1133
HpyAV	CCTTC	5 cut(s)	24, 188, 373, 777, 1177
HpyCH4III	ACNGT	3 cut(s)	298, 438, 1074
HpyCH4IV	ACGT	1 cut(s)	1054
HpyCH4V	TGCA	7 cut(s)	184, 322, 517, 566, 885, 893, 956
HpyF10VI	GCNNNNNNNGC	2 cut(s)	947, 1121
HpyF3I	CTNAG	5 cut(s)	278, 570, 756, 814, 978
HpySE526I	ACGT	1 cut(s)	1054
Hsp92II	CATG	4 cut(s)	11, 256, 566, 885
HspAI	GCGC	1 cut(s)	284
Kzo9I	GATC	3 cut(s)	547, 658, 818
LmnI	GCTCC	3 cut(s)	39, 331, 860
Lsp1109I	GCAGC	3 cut(s)	875, 1059, 1124
LweI	GCATC	2 cut(s)	273, 303
MaeI	CTAG	2 cut(s)	1089, 1158
MaeII	ACGT	1 cut(s)	1054
MaeIII	GTNAC	3 cut(s)	446, 603, 733
MalI	GATC	3 cut(s)	549, 660, 820
MboI	GATC	3 cut(s)	547, 658, 818
MboII	GAAGA	4 cut(s)	653, 694, 792, 927
MflI	RGATCY	1 cut(s)	658
MhlI	GDGCHC	2 cut(s)	336, 747
MluCI	AATT	5 cut(s)	158, 179, 212, 323, 415
MlyI	GAGTC	2 cut(s)	845, 928
MmeI	TCCRAC	1 cut(s)	273
MnlI	CCTC	6 cut(s)	47, 358, 365, 483, 561, 751
MroXI	GAANNNNTTC	2 cut(s)	73, 1137
MseI	TTAA	6 cut(s)	204, 273, 426, 717, 768, 1164
MslI	CAYNNNNRTG	2 cut(s)	845, 886
MspA1I	CMGCKG	1 cut(s)	941
MspCI	CTTAAG	1 cut(s)	425
MspI	CCGG	1 cut(s)	40
MspR9I	CCNGG	3 cut(s)	3, 675, 931
Mva1269I	GAATGC	1 cut(s)	1137
MvaI	CCWGG	3 cut(s)	3, 675, 931
MwoI	GCNNNNNNNGC	2 cut(s)	947, 1121
NdeII	GATC	3 cut(s)	547, 658, 818
NlaIII	CATG	4 cut(s)	11, 256, 566, 885
NlaIV	GGNNCC	4 cut(s)	13, 35, 333, 537
NmuCI	GTSAC	1 cut(s)	603
NsbI	TGCGCA	1 cut(s)	285
NspI	RCATGY	1 cut(s)	885
PcsI	WCGNNNNNNNCGW	1 cut(s)	1078
PctI	GAATGC	1 cut(s)	1137
PdmI	GAANNNNTTC	2 cut(s)	73, 1137
PfeI	GAWTC	4 cut(s)	74, 683, 1100, 1147
PflMI	CCANNNNNTGG	2 cut(s)	8, 215
PfoI	TCCNGGA	1 cut(s)	929
PkrI	GCNGC	3 cut(s)	865, 1049, 1114
PleI	GAGTC	2 cut(s)	844, 928
PpsI	GAGTC	2 cut(s)	844, 928
PshAI	GACNNNNGTC	1 cut(s)	1072
PshBI	ATTAAT	1 cut(s)	204
PsiI	TTATAA	1 cut(s)	54
Psp6I	CCWGG	2 cut(s)	673, 929
PspEI	GGTNACC	1 cut(s)	733
PspFI	CCCAGC	1 cut(s)	946
PspGI	CCWGG	2 cut(s)	673, 929
PspN4I	GGNNCC	4 cut(s)	13, 35, 333, 537
PspPI	GGNCC	1 cut(s)	1074
PsuI	RGATCY	1 cut(s)	658
PvuII	CAGCTG	1 cut(s)	941
RsaI	GTAC	3 cut(s)	86, 359, 440
RsaNI	GTAC	3 cut(s)	85, 358, 439
RseI	CAYNNNNRTG	2 cut(s)	845, 886
SaqAI	TTAA	6 cut(s)	204, 273, 426, 717, 768, 1164
SatI	GCNGC	3 cut(s)	864, 1048, 1113
Sau3AI	GATC	3 cut(s)	547, 658, 818
Sau96I	GGNCC	1 cut(s)	1074
ScaI	AGTACT	1 cut(s)	440
SchI	GAGTC	2 cut(s)	845, 928
ScrFI	CCNGG	3 cut(s)	3, 675, 931
SduI	GDGCHC	2 cut(s)	336, 747
SfaNI	GCATC	2 cut(s)	273, 303
SinI	GGWCC	1 cut(s)	1074
SmiMI	CAYNNNNRTG	2 cut(s)	845, 886
SmlI	CTYRAG	1 cut(s)	425
SmoI	CTYRAG	1 cut(s)	425
SpeI	ACTAGT	1 cut(s)	1157
Sse9I	AATT	5 cut(s)	158, 179, 212, 323, 415
SspMI	CTAG	2 cut(s)	1089, 1158
StyD4I	CCNGG	2 cut(s)	673, 929
TaaI	ACNGT	3 cut(s)	298, 438, 1074
TaiI	ACGT	1 cut(s)	1057
TaqI	TCGA	2 cut(s)	834, 1066
TaqII	GACCGA	1 cut(s)	685
TasI	AATT	5 cut(s)	158, 179, 212, 323, 415
TatI	WGTACW	3 cut(s)	84, 357, 438
TfiI	GAWTC	4 cut(s)	74, 683, 1100, 1147
Tru1I	TTAA	6 cut(s)	204, 273, 426, 717, 768, 1164
Tru9I	TTAA	6 cut(s)	204, 273, 426, 717, 768, 1164
TscAI	CASTG	4 cut(s)	406, 612, 861, 986
TseFI	GTSAC	1 cut(s)	603
TseI	GCWGC	3 cut(s)	863, 1047, 1112
Tsp45I	GTSAC	1 cut(s)	603
TspDTI	ATGAA	4 cut(s)	551, 609, 696, 924
TspRI	CASTG	4 cut(s)	406, 612, 861, 986
Van91I	CCANNNNNTGG	2 cut(s)	8, 215
Vha464I	CTTAAG	1 cut(s)	425
VpaK11BI	GGWCC	1 cut(s)	1074
VspI	ATTAAT	1 cut(s)	204
XapI	RAATTY	1 cut(s)	212
XbaI	TCTAGA	1 cut(s)	1088
XceI	RCATGY	1 cut(s)	885
XmiI	GTMKAC	1 cut(s)	44
XmnI	GAANNNNTTC	2 cut(s)	73, 1137
XspI	CTAG	2 cut(s)	1089, 1158
ZrmI	AGTACT	1 cut(s)	440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.