Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0004455

Physical Location & Seq

Genomic Coordinates Forward (+)

51302303 .. 51303482

Gene Structure 1180 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG258600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGCATTCAAAATGAACTTGCTCATATTCATCTCACTCTTGGCTTTCTCAGTTGGCTCCAAGCTTTCATATTCAGACAACGCAGCGGTGCCGGAGTTCACATTCAGTTGGCTGGACGATAAAGACACATATCAAGCCGGCGAAATCGCCACCATAAGCATCAGAGCACTAAACAACTTTGACAAGCTTGACAAGAATGCGTTCAAGCCCACTCTTACAGTAGATGGAAAGATTGGGAATAGCTCTGTAGTATCTGGGGTTCTTTCAGATTTTGAAGGAGACCCTACTAGTTGGAAGCTTTTCTTTACTACAATGACAGCCGGGTTGTTCAACGTGTTGATCAATGAGGACCACTACAAAGTGTTTGATTCATCTCTGCATTTCCAAGTTCATCCAGGGAAAATATACCCATCTGTCTGTATTGCTTCATGGATGGGTTTCGTCCACGAGTTTGAAGCTGGTGCTCAAGCTAGAGTACAGATACTTCCGAAGGATGCATTTGGGAATAAGATCAATGAAACCAGTGAAGATCTAAGGGTACATAATTTTACAGTGTCTGTATTTCATGCAAATGATTCCATTGCAAGCATACAGAACATCACCCACTTTGGTTGGAACCAATTTGGTTATATCATTATGGAATTCATTGTGGTAAAAGCTGGAGACCTCTTGTTGCATGTGGAAGGTGGTAATCAGAGCTTAAATGGCTGTCCACTACCCTTTAAGGACCTCTTGAAGTTTCCAATTGTGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009987 GO:0016020 GO:0016021 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0044425 GO:0044459 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0051704 GO:0055046 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Filamin

Protein Analysis

251

Amino Acids

27.97

Weight (kDa)

5.4

Isoelectric Point (pI)

22.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ig_GEX2_N	PF23616	31 - 130	8.3e-31	GEX2 N-terminal Ig-like domain
Ig_GEX2_N	PF23616	138 - 242	4.3e-36	GEX2 N-terminal Ig-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004455)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49150 AT5G49150 AT5G49150 AT5G49150 AT5G49150 AT5G49150 AT5G49150 AT5G49150
fragaria_vesca	FvH4_4g18570
prunus_persica	Prupe.1G132400_v2.0.a1 Prupe.1G132400_v2.0.a1 Prupe.1G132400_v2.0.a1 Prupe.1G132400_v2.0.a1
pyrus_communis	pycom16g14000 pycom16g14010
rosa_chinensis	RchiOBHm_Chr4g0423171
rosa_laevigata	RLG00000007579
rosa_multiflora	Rmu_sc0000744.1_g000001 Rmu_sc0008829.1_g000002 Rmu_sc0020601.1_g000001
rosa_roxburghii	Rroxscaffold_5G00365330
rosa_rugosa	Rorug04G0184800 Rorug04G0184900
rosa_samantha	Rh4AG244300 Rh4AG244400 Rh4BG249500 Rh4BG249600 Rh4CG258600 Rh4CG258700 Rh4DG244300 Rh4DG244400
rosa_wichuraiana	Rw4G021050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	88
AciI	CCGC	1 cut(s)	86
AcsI	RAATTY	1 cut(s)	641
AfaI	GTAC	2 cut(s)	477, 540
AflIII	ACRYGT	1 cut(s)	333
AgsI	TTSAA	6 cut(s)	10, 205, 275, 331, 455, 736
AhlI	ACTAGT	1 cut(s)	287
AjnI	CCWGG	1 cut(s)	394
AluBI	AGCT	8 cut(s)	64, 187, 243, 298, 458, 470, 659, 699
AluI	AGCT	8 cut(s)	64, 187, 243, 298, 458, 470, 659, 699
Alw21I	GWGCWC	2 cut(s)	169, 466
Alw26I	GTCTC	2 cut(s)	273, 657
AlwNI	CAGNNNCTG	1 cut(s)	557
ApeKI	GCWGC	1 cut(s)	83
ApoI	RAATTY	1 cut(s)	641
Asp700I	GAANNNNTTC	2 cut(s)	200, 299
AspS9I	GGNCC	2 cut(s)	349, 727
AsuC2I	CCSGG	1 cut(s)	322
AsuHPI	GGTGA	1 cut(s)	592
AvaII	GGWCC	2 cut(s)	349, 727
BanI	GGYRCC	1 cut(s)	88
BarI	GAAGNNNNNNTAC	2 cut(s)	468, 500
BauI	CACGAG	1 cut(s)	446
Bbv12I	GWGCWC	2 cut(s)	169, 466
BbvI	GCAGC	1 cut(s)	95
BccI	CCATC	3 cut(s)	218, 418, 427
BciT130I	CCWGG	1 cut(s)	396
BclI	TGATCA	1 cut(s)	339
BcnI	CCSGG	1 cut(s)	322
BcoDI	GTCTC	2 cut(s)	273, 657
BcuI	ACTAGT	1 cut(s)	287
BfaI	CTAG	2 cut(s)	288, 471
BfmI	CTRYAG	1 cut(s)	246
BglII	AGATCT	1 cut(s)	529
BisI	GCNGC	1 cut(s)	84
BlsI	GCNGC	1 cut(s)	85
Bme1390I	CCNGG	2 cut(s)	322, 396
Bme18I	GGWCC	2 cut(s)	349, 727
BmgT120I	GGNCC	2 cut(s)	349, 727
BmiI	GGNNCC	3 cut(s)	58, 90, 617
BmrFI	CCNGG	2 cut(s)	322, 396
BmsI	GCATC	2 cut(s)	168, 484
BpmI	CTGGAG	1 cut(s)	681
BpuEI	CTTGAG	1 cut(s)	450
BpuMI	CCSGG	1 cut(s)	322
BsaI	GGTCTC	2 cut(s)	273, 657
BsaJI	CCNNGG	1 cut(s)	395
Bse118I	RCCGGY	1 cut(s)	137
Bse1I	ACTGG	1 cut(s)	522
Bse3DI	GCAATG	1 cut(s)	579
BseBI	CCWGG	1 cut(s)	396
BseDI	CCNNGG	1 cut(s)	395
BseGI	GGATG	3 cut(s)	391, 438, 499
BseMI	GCAATG	1 cut(s)	579
BseMII	CTCAG	1 cut(s)	63
BseNI	ACTGG	1 cut(s)	522
BseXI	GCAGC	1 cut(s)	95
BshNI	GGYRCC	1 cut(s)	88
BsiHKAI	GWGCWC	2 cut(s)	169, 466
BsiSI	CCGG	3 cut(s)	92, 138, 321
BsmAI	GTCTC	2 cut(s)	273, 657
BsmI	GAATGC	2 cut(s)	5, 202
Bso31I	GGTCTC	2 cut(s)	273, 657
Bsp1286I	GDGCHC	2 cut(s)	169, 466
Bsp143I	GATC	3 cut(s)	339, 510, 529
BspACI	CCGC	1 cut(s)	86
BspCNI	CTCAG	1 cut(s)	62
BspLI	GGNNCC	3 cut(s)	58, 90, 617
BspT107I	GGYRCC	1 cut(s)	88
BspTNI	GGTCTC	2 cut(s)	273, 657
BsrDI	GCAATG	1 cut(s)	579
BsrFI	RCCGGY	1 cut(s)	137
BsrI	ACTGG	1 cut(s)	522
BssAI	RCCGGY	1 cut(s)	137
BssECI	CCNNGG	1 cut(s)	395
BssMI	GATC	3 cut(s)	339, 510, 529
BssSI	CACGAG	1 cut(s)	446
Bst2BI	CACGAG	1 cut(s)	446
Bst2UI	CCWGG	1 cut(s)	396
Bst4CI	ACNGT	2 cut(s)	220, 553
BstC8I	GCNNGC	2 cut(s)	139, 586
BstDEI	CTNAG	2 cut(s)	49, 533
BstF5I	GGATG	3 cut(s)	391, 438, 499
BstKTI	GATC	3 cut(s)	342, 513, 532
BstMAI	GTCTC	2 cut(s)	273, 657
BstMBI	GATC	3 cut(s)	339, 510, 529
BstMWI	GCNNNNNNNGC	1 cut(s)	705
BstNI	CCWGG	1 cut(s)	396
BstNSI	RCATGY	1 cut(s)	680
BstSCI	CCNGG	2 cut(s)	320, 394
BstSFI	CTRYAG	1 cut(s)	246
BstV1I	GCAGC	1 cut(s)	95
BstX2I	RGATCY	1 cut(s)	529
BstXI	CCANNNNNNTGG	1 cut(s)	750
BstYI	RGATCY	1 cut(s)	529
BtsCI	GGATG	3 cut(s)	391, 438, 499
BtsIMutI	CAGTG	2 cut(s)	529, 558
Cac8I	GCNNGC	2 cut(s)	139, 586
CaiI	CAGNNNCTG	1 cut(s)	557
Cfr10I	RCCGGY	1 cut(s)	137
Cfr13I	GGNCC	2 cut(s)	349, 727
Csp6I	GTAC	2 cut(s)	476, 539
CspCI	CAANNNNNGTGG	2 cut(s)	593, 628
CviAII	CATG	3 cut(s)	429, 566, 677
CviQI	GTAC	2 cut(s)	476, 539
DdeI	CTNAG	2 cut(s)	49, 533
DpnI	GATC	3 cut(s)	341, 512, 531
DpnII	GATC	3 cut(s)	339, 510, 529
Eco31I	GGTCTC	2 cut(s)	273, 657
Eco47I	GGWCC	2 cut(s)	349, 727
EcoO109I	RGGNCCY	1 cut(s)	727
EcoRI	GAATTC	1 cut(s)	641
EcoRII	CCWGG	1 cut(s)	394
EcoT22I	ATGCAT	1 cut(s)	499
FaeI	CATG	3 cut(s)	432, 569, 680
FalI	AAGNNNNNCTT	4 cut(s)	287, 319, 716, 748
FatI	CATG	3 cut(s)	428, 565, 676
FbaI	TGATCA	1 cut(s)	339
Fnu4HI	GCNGC	1 cut(s)	84
FokI	GGATG	3 cut(s)	378, 445, 506
Fsp4HI	GCNGC	1 cut(s)	84
FspBI	CTAG	2 cut(s)	288, 471
GluI	GCNGC	1 cut(s)	84
GsuI	CTGGAG	1 cut(s)	681
HapII	CCGG	3 cut(s)	92, 138, 321
Hin1II	CATG	3 cut(s)	432, 569, 680
HindIII	AAGCTT	3 cut(s)	62, 185, 296
HinfI	GANTC	2 cut(s)	368, 575
HpaII	CCGG	3 cut(s)	92, 138, 321
HphI	GGTGA	1 cut(s)	592
Hpy166II	GTNNAC	3 cut(s)	99, 445, 713
Hpy188I	TCNGA	5 cut(s)	76, 164, 268, 489, 696
Hpy188III	TCNNGA	1 cut(s)	733
Hpy8I	GTNNAC	3 cut(s)	99, 445, 713
HpyAV	CCTTC	3 cut(s)	269, 484, 677
HpyCH4III	ACNGT	2 cut(s)	220, 553
HpyCH4IV	ACGT	1 cut(s)	333
HpyCH4V	TGCA	5 cut(s)	379, 497, 569, 584, 676
HpyF10VI	GCNNNNNNNGC	1 cut(s)	705
HpyF3I	CTNAG	2 cut(s)	49, 533
HpySE526I	ACGT	1 cut(s)	333
Hsp92II	CATG	3 cut(s)	432, 569, 680
KroI	GCCGGC	1 cut(s)	137
KroNI	GCCGGC	1 cut(s)	139
Ksp22I	TGATCA	1 cut(s)	339
Kzo9I	GATC	3 cut(s)	339, 510, 529
LmnI	GCTCC	1 cut(s)	62
Lsp1109I	GCAGC	1 cut(s)	95
LweI	GCATC	2 cut(s)	168, 484
MaeI	CTAG	2 cut(s)	288, 471
MaeII	ACGT	1 cut(s)	333
MalI	GATC	3 cut(s)	341, 512, 531
MboI	GATC	3 cut(s)	339, 510, 529
MboII	GAAGA	1 cut(s)	539
MfeI	CAATTG	1 cut(s)	744
MflI	RGATCY	1 cut(s)	529
MhlI	GDGCHC	2 cut(s)	169, 466
MluCI	AATT	4 cut(s)	544, 620, 641, 744
MmeI	TCCRAC	2 cut(s)	272, 593
MnlI	CCTC	3 cut(s)	340, 677, 740
Mph1103I	ATGCAT	1 cut(s)	499
MroNI	GCCGGC	1 cut(s)	137
MroXI	GAANNNNTTC	2 cut(s)	200, 299
MseI	TTAA	2 cut(s)	701, 723
MslI	CAYNNNNRTG	1 cut(s)	570
MspA1I	CMGCKG	1 cut(s)	86
MspI	CCGG	3 cut(s)	92, 138, 321
MspR9I	CCNGG	2 cut(s)	322, 396
MunI	CAATTG	1 cut(s)	744
Mva1269I	GAATGC	2 cut(s)	5, 202
MvaI	CCWGG	1 cut(s)	396
MwoI	GCNNNNNNNGC	1 cut(s)	705
NaeI	GCCGGC	1 cut(s)	139
NciI	CCSGG	1 cut(s)	322
NdeII	GATC	3 cut(s)	339, 510, 529
NgoMIV	GCCGGC	1 cut(s)	137
NlaIII	CATG	3 cut(s)	432, 569, 680
NlaIV	GGNNCC	3 cut(s)	58, 90, 617
NsiI	ATGCAT	1 cut(s)	499
NspI	RCATGY	1 cut(s)	680
PctI	GAATGC	2 cut(s)	5, 202
PdiI	GCCGGC	1 cut(s)	139
PdmI	GAANNNNTTC	2 cut(s)	200, 299
PfeI	GAWTC	2 cut(s)	368, 575
PkrI	GCNGC	1 cut(s)	85
PpuMI	RGGWCCY	1 cut(s)	727
Psp5II	RGGWCCY	1 cut(s)	727
Psp6I	CCWGG	1 cut(s)	394
PspGI	CCWGG	1 cut(s)	394
PspN4I	GGNNCC	3 cut(s)	58, 90, 617
PspPI	GGNCC	2 cut(s)	349, 727
PspPPI	RGGWCCY	1 cut(s)	727
PsrI	GAACNNNNNNTAC	2 cut(s)	243, 275
PstNI	CAGNNNCTG	1 cut(s)	557
PsuI	RGATCY	1 cut(s)	529
RsaI	GTAC	2 cut(s)	477, 540
RsaNI	GTAC	2 cut(s)	476, 539
RseI	CAYNNNNRTG	1 cut(s)	570
SaqAI	TTAA	2 cut(s)	701, 723
SatI	GCNGC	1 cut(s)	84
Sau3AI	GATC	3 cut(s)	339, 510, 529
Sau96I	GGNCC	2 cut(s)	349, 727
ScrFI	CCNGG	2 cut(s)	322, 396
SduI	GDGCHC	2 cut(s)	169, 466
SfaNI	GCATC	2 cut(s)	168, 484
SfcI	CTRYAG	1 cut(s)	246
SinI	GGWCC	2 cut(s)	349, 727
SmiMI	CAYNNNNRTG	1 cut(s)	570
SmlI	CTYRAG	1 cut(s)	465
SmoI	CTYRAG	1 cut(s)	465
SpeI	ACTAGT	1 cut(s)	287
Sse9I	AATT	4 cut(s)	544, 620, 641, 744
SsiI	CCGC	1 cut(s)	86
SspMI	CTAG	2 cut(s)	288, 471
StyD4I	CCNGG	2 cut(s)	320, 394
TaaI	ACNGT	2 cut(s)	220, 553
TaiI	ACGT	1 cut(s)	336
TasI	AATT	4 cut(s)	544, 620, 641, 744
TatI	WGTACW	1 cut(s)	475
TfiI	GAWTC	2 cut(s)	368, 575
Tru1I	TTAA	2 cut(s)	701, 723
Tru9I	TTAA	2 cut(s)	701, 723
TscAI	CASTG	2 cut(s)	529, 558
TseI	GCWGC	1 cut(s)	83
TspDTI	ATGAA	9 cut(s)	19, 29, 57, 360, 380, 417, 531, 554, 634
TspRI	CASTG	2 cut(s)	529, 558
VpaK11BI	GGWCC	2 cut(s)	349, 727
XapI	RAATTY	1 cut(s)	641
XceI	RCATGY	1 cut(s)	680
XmnI	GAANNNNTTC	2 cut(s)	200, 299
XspI	CTAG	2 cut(s)	288, 471
Zsp2I	ATGCAT	1 cut(s)	499

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.