Rroxscaffold_5G00365330

Filamin/ABP280 repeat

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
46860151 .. 46866113
5963 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00365330.1

Sequence Viewer

Length: 3387 bp
ATGGCATTCAAAATGAATTACTTGCTCATATTCATCTCACTCTTGGCTTTCTCAGTTGGCTCCAAGCTTTCATATTCAGACAACGCAGCGGTGCCGGAGTTCACATTCAGTTGGCTGGACGATAAAGACACATATCAAGCCGGCGAAATCGCCACCATAAGCATCAGAGCACTAAACAACTTTGACAAGCTTGACAAGAATGCGTTCAAGCCCACTCTTACAGTAGATGGAAAGATTGGGAATAGCTCTGTAGTATCTGGGGTTCTTTCAGATTTTGAAGGAGACCCTACTAGTTGGAAGCTTTTCTTTACTACAATAACAGCCGGGTTGTTTAACGTGTTGATCAATGAGGACCACTACAAAGTGTTTGATTCATCTCTGCATTTCCAAGTTCATCCAGGGAAAATATACCCATCTGTCTGTGTTGCTTCATGGATGGGTTTCGTCCACGAGTTTGAAGCTGGTGCTCAAGCTAGAGTACAGATACTTCCGAAGGATGCATTTGGGAATAAGATCAATGAAACCAGTGAAGATCCAAGGGTACATAATTTTACAGTGTCTGTATTTCATGCAAATGATTCCATTGCAAGCATACCGAACATCACCCACTTTGGTTGGAACCAATTTGGTTATATCATCATGGAATTCATTGTGGTAAAAGCTGGAGACCTCTTGTTGCATGTGGAAGGTGGTAATCAGAGCTTAAATGGCTGTCCACTACCCTTTAAGGTGAACCCAGGACCTCTTGAAGTTTCCAATTGTGTGGTGAAATGGGATTTTGAACCAAATGCATGGCAATTATATTCCAAGATGGAAATCTTTATATACCAGCAAGATCAATATGGTAACCTTGTTCCAGGACTATATGAATTTGATGCTGAAGTTGTTGAGACAGAGACGAATTTGTCAATACCTGTTCCAGATTTGCACTTTGAAGAAGTGGCGGCTGGAATTCAGCTGTTTTCTTTTACTAATCTGGAACCAGGCAACTTTTTGCTGACTATATCAGATATGAAGCATGATAAAAGCATCTCTAATATGCCATATGCTTATACCGTCTTTGTTGGCTATTGCAATGGGACAAAAAGTGTTGTTAATGGAACTGGTTTAAATAGCTCCGCAGCAGGAGAAAGATCAGAATTCTCAGTTTATTTGAATGATGCTTATCAAAATCCCTCTCCAGTTGAAATCGAAAGGCTTGAACTACAAATTGTAAGGGAAATTGACTCCTCTCATGTGCAGTCGAGCATATTTCCTATCCAGATCATCAATGGGAGTGGACCTGCTCAAGGAATAAGATATGGTACAACCAGCCAAATAGAATTTGCTCCTTCACCATCTATGACCTTGACAAATTCTACTGTCGGGAGCTTCAGCACTCTGGCAACTGCTCTCAATGTGGTATATACACCTGACAAGAGTGGCATTTATAAAATTTATGTGTTTTGTGGAAATATTTTGCTGAATGGAGGCCGTCCCTTTAATAAGGAAGTTATAGCAGGGAGTGTTGATCCATCATGCTCAACAGTTGTCAAATTTTCTCCCAAGGTGCCAAGGACGATTAATAATGAAGTAGTAGTGAAGCTCGGGGATTCATTTTTCAATCCCGTCTTGTCACAACAATCTGGGCTGAAACTAGAGATTGTTTCTGTAAACAGTTCTGGCTTTTCAAGTTCCTTGTTTGTGGACAATAATGATGGGTCATACACTGTACACTATCTGGCTAAGGAGGTTGGAACTTATGAGATGTGTGCTGCATTTGATGGCAAACGTATTTCTGCCTGCCCCTTTGGGGTCAATGTCTACAGTAGTGAATATTTTCCCAGAGCCGAAAATGATACAATTTCTGTGTGGGAGGATGAGTCAATTGCTTTTGATGTTTTGGCCAATGACTACTTTCCTGGAAATAATGCTAGTGTTGTTGAATTCTCCAAGCCAGGTCATGGTTCCCTTATTGAGTATGGAAGGCTCCTCCGGTATACACCTTATAAAGACTATTATGGAAATGATTCCTTTGTGTACACAATGTCTGATATAAACGACAATCTTGCTACTGCTTTTGTAAACATATCTGTTCTCACCATCCCACCACAATTTGTTTCTTTTCCAAGTGAATTGCAAGCTACTGAAGACGAGATTAATCCAAAATTTGGTGGTTTCTCTGGGTTTATGATAAGATATTCCGACATGATGGAGAATATCTCTGTTAATCTTAGTGCGCAATCTGGGACAATATTTCTGTCTCCGATGCTCATGCAATTCTGGGAGCCCATTTGGAATGGACTTTCTGTATACAAAGAGGATGGAGGAGTGAAGGGGTTGATATTACAAGGCAGTGTGGAAGTAATCAATTTTGCCCTTCAGTCAATACAGTACTATGGGAACGAGAACTTCTGTGGCTATGATACTATTCGGTTCACTACGAGGAATAGGAATGGAGTAAATGACTTGCATATTCCAGTTTTTGTGGAACCTATCAATGATCCTCCCTTTGTTCATGCACCTGAGTTTATCATTCTGAAAAGTAATGAAGATGAGTCACTGATATATGACAGAGAAACAGACAAGTTTGAGTTCTATATTGGAGACCCAGATCTTCTTGCGTTCCCTGGTAATGAATCCCTTTTTTCGGTCTTCTTCTCTATGGAAGTTAATGATGGATATTTGGTAACCAGCCTACCAGCTGAGCTCATCACTACAATAGAAGTGAAGACTAAGAATAGCTACCAGTGGCTACCACTTCAGACATATGTTACCATCTCAAAGCATTTCAAGGTTAAAGCTAAGGGAATCAGATTTTATGCAACAGTTAATGAATGCAATACTGCTATGCAACAGCTGTTTTATCATGGTGGAGGAGAGCAAGATGCCATTTTGACAGTGACATTGAATGACCTGGGAAACTATGGCTGTTATTGTAACTGTTCCGAAAAGATATCAGTGCCCTTATTTGCTGAGGCTTCTGTTAATTTAATAAGAAGAAGGCCGATGAGTTCACTTGTGTCTCGTGGCTTAGGATCAGCTATTGTCATTGAGTCCATTATAGTGTTTTCACTGGGAGCAGCACTAATGTTCTTCACATGCAAATGTGCAACTATCCTTGTAAATGAAAGAAGAAACAGAGCTACCAAGACTCCAGCTGACCCAGCAAGTGCACATAGTTTGGGCAAAGGAACTTCGGGTAAAAGTTTACCAGAGAACGCAACTCACCTTACTGCGTCTTGTTCAAGTCCCCTGCTTGGCAGCCAACGTCCCAACTTTAGACAACGGTCCTGCCGTCAATCTGGAAATGGGGAATCAAGCAAGGCAGCATATAAGGCTACTGGTGAACGCATTCAGCAGAATCCTGCACCTAGTTTTAAGCCCTTTTGTGTTGAGAAGGAATAA

Protein Analysis

1128

Amino Acids

124.72

Weight (kDa)

4.99

Isoelectric Point (pI)

37.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ig_GEX2_N PF23616 32 - 131 3.9e-30 GEX2 N-terminal Ig-like domain
Ig_GEX2_N PF23616 139 - 244 3.3e-36 GEX2 N-terminal Ig-like domain
Filamin PF00630 545 - 597 7.6e-06 Filamin/ABP280 repeat
Big_9 PF17963 608 - 690 1.6e-12 Bacterial Ig domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1431, 1989
AasI GACNNNNNNGTC 1 cut(s) 904
Acc16I TGCGCA 1 cut(s) 2220
Acc36I ACCTGC 1 cut(s) 1291
AccB1I GGYRCC 2 cut(s) 91, 1549
AccB7I CCANNNNNTGG 2 cut(s) 1943, 2150
AccI GTMKAC 3 cut(s) 1803, 1979, 2292
AciI CCGC 3 cut(s) 89, 944, 1119
AclWI GGATC 4 cut(s) 527, 1505, 2477, 3025
AcoI YGGCCR 1 cut(s) 1884
AcuI CTGAAG 5 cut(s) 900, 1357, 2148, 2345, 2726
AfaI GTAC 6 cut(s) 480, 543, 1306, 1713, 2021, 2375
AfiI CCNNNNNNNGG 6 cut(s) 1289, 1792, 1943, 2150, 2629, 3239
AflIII ACRYGT 1 cut(s) 336
AhlI ACTAGT 1 cut(s) 290
AjnI CCWGG 8 cut(s) 397, 736, 856, 982, 1900, 1936, 2608, 2895
Alw21I GWGCWC 4 cut(s) 172, 469, 2691, 3157
Alw26I GTCTC 7 cut(s) 276, 660, 884, 890, 2247, 2580, 3009
Alw44I GTGCAC 1 cut(s) 3153
AlwI GGATC 4 cut(s) 527, 1505, 2477, 3025
AlwNI CAGNNNCTG 1 cut(s) 560
Ama87I CYCGRG 1 cut(s) 1586
AoxI GGCC 3 cut(s) 1471, 1884, 2984
ApaLI GTGCAC 1 cut(s) 3153
ApeKI GCWGC 6 cut(s) 86, 1121, 1754, 3062, 3243, 3308
AseI ATTAAT 2 cut(s) 1563, 2139
Asp700I GAANNNNTTC 5 cut(s) 203, 302, 1818, 2008, 3333
AspLEI GCGC 1 cut(s) 2221
AspS9I GGNCC 4 cut(s) 352, 740, 1280, 3270
AsuC2I CCSGG 1 cut(s) 325
AsuHPI GGTGA 7 cut(s) 595, 742, 778, 1326, 2071, 3200, 3338
AvaI CYCGRG 1 cut(s) 1586
AvaII GGWCC 4 cut(s) 352, 740, 1280, 3270
BaeGI GKGCMC 2 cut(s) 2946, 3157
BalI TGGCCA 1 cut(s) 1886
BanI GGYRCC 2 cut(s) 91, 1549
BanII GRGCYC 2 cut(s) 2271, 2691
BarI GAAGNNNNNNTAC 2 cut(s) 471, 503
BauI CACGAG 2 cut(s) 449, 3006
BbsI GAAGAC 3 cut(s) 2136, 2626, 2717
Bbv12I GWGCWC 4 cut(s) 172, 469, 2691, 3157
BbvCI CCTCAGC 1 cut(s) 2955
BbvI GCAGC 6 cut(s) 98, 1133, 1741, 3074, 3255, 3320
BceAI ACGGC 2 cut(s) 1458, 3261
BcgI CGANNNNNNTGC 4 cut(s) 2030, 2064, 2236, 2270
BciT130I CCWGG 8 cut(s) 399, 738, 858, 984, 1902, 1938, 2610, 2897
BclI TGATCA 1 cut(s) 342
BcnI CCSGG 1 cut(s) 325
BcoDI GTCTC 7 cut(s) 276, 660, 884, 890, 2247, 2580, 3009
BcuI ACTAGT 1 cut(s) 290
BfaI CTAG 5 cut(s) 291, 474, 1637, 1914, 3354
BfmI CTRYAG 2 cut(s) 249, 1804
BfuAI ACCTGC 1 cut(s) 1291
BglII AGATCT 1 cut(s) 2593
BisI GCNGC 7 cut(s) 87, 945, 1122, 1755, 3063, 3244, 3309
BlpI GCTNAGC 1 cut(s) 2685
BlsI GCNGC 7 cut(s) 88, 946, 1123, 1756, 3064, 3245, 3310
BmcAI AGTACT 1 cut(s) 2375
Bme1390I CCNGG 9 cut(s) 325, 399, 738, 858, 984, 1902, 1938, 2610, 2897
Bme18I GGWCC 4 cut(s) 352, 740, 1280, 3270
BmeT110I CYCGRG 1 cut(s) 1586
BmgT120I GGNCC 4 cut(s) 352, 740, 1280, 3270
BmiI GGNNCC 9 cut(s) 61, 93, 620, 981, 1551, 1948, 1970, 2268, 2472
BmrFI CCNGG 9 cut(s) 325, 399, 738, 858, 984, 1902, 1938, 2610, 2897
BmrI ACTGGG 1 cut(s) 3065
BmsI GCATC 7 cut(s) 171, 487, 865, 1038, 1150, 2238, 2857
BmuI ACTGGG 1 cut(s) 3065
BoxI GACNNNNGTC 1 cut(s) 3268
BpiI GAAGAC 3 cut(s) 2136, 2626, 2717
BplI GAGNNNNNCTC 2 cut(s) 2186, 2218
BpmI CTGGAG 3 cut(s) 684, 1164, 3120
Bpu10I CCTNAGC 4 cut(s) 1725, 2784, 2955, 3013
Bpu1102I GCTNAGC 1 cut(s) 2685
BpuEI CTTGAG 2 cut(s) 453, 1272
BpuMI CCSGG 1 cut(s) 325
BsaBI GATNNNNATC 2 cut(s) 815, 1164
BsaI GGTCTC 3 cut(s) 276, 660, 2580
BsaJI CCNNGG 7 cut(s) 398, 536, 736, 1545, 1553, 2608, 2896
BsaWI WCCGGW 1 cut(s) 1974
BsaXI ACNNNNNCTCC 4 cut(s) 1847, 1877, 3118, 3148
Bsc4I CCNNNNNNNGG 6 cut(s) 1289, 1792, 1943, 2150, 2629, 3239
Bse118I RCCGGY 1 cut(s) 140
Bse1I ACTGG 7 cut(s) 525, 1108, 1181, 2459, 2728, 3060, 3328
Bse3DI GCAATG 2 cut(s) 582, 1081
Bse8I GATNNNNATC 2 cut(s) 815, 1164
BseBI CCWGG 8 cut(s) 399, 738, 858, 984, 1902, 1938, 2610, 2897
BseDI CCNNGG 7 cut(s) 398, 536, 736, 1545, 1553, 2608, 2896
BseGI GGATG 6 cut(s) 394, 441, 502, 1864, 2082, 2308
BseJI GATNNNNATC 2 cut(s) 815, 1164
BseLI CCNNNNNNNGG 6 cut(s) 1289, 1792, 1943, 2150, 2629, 3239
BseMI GCAATG 2 cut(s) 582, 1081
BseMII CTCAG 5 cut(s) 66, 1158, 2496, 2676, 2946
BseNI ACTGG 7 cut(s) 525, 1108, 1181, 2459, 2728, 3060, 3328
BseRI GAGGAG 4 cut(s) 1219, 1961, 2322, 2871
BseSI GKGCMC 2 cut(s) 2946, 3157
BseXI GCAGC 6 cut(s) 98, 1133, 1741, 3074, 3255, 3320
BseYI CCCAGC 1 cut(s) 3145
BsgI GTGCAG 2 cut(s) 1259, 3333
BshFI GGCC 3 cut(s) 1473, 1886, 2986
BshNI GGYRCC 2 cut(s) 91, 1549
BsiHKAI GWGCWC 4 cut(s) 172, 469, 2691, 3157
BsiHKCI CYCGRG 1 cut(s) 1586
BsiSI CCGG 4 cut(s) 95, 141, 324, 1975
BslFI GGGAC 5 cut(s) 1093, 1461, 2242, 3216, 3237
BslI CCNNNNNNNGG 6 cut(s) 1289, 1792, 1943, 2150, 2629, 3239
BsmAI GTCTC 7 cut(s) 276, 660, 884, 890, 2247, 2580, 3009
BsmBI CGTCTC 1 cut(s) 890
BsmFI GGGAC 5 cut(s) 1093, 1461, 2242, 3216, 3237
BsmI GAATGC 4 cut(s) 5, 205, 2822, 3333
BsnI GGCC 3 cut(s) 1473, 1886, 2986
Bso31I GGTCTC 3 cut(s) 276, 660, 2580
BsoBI CYCGRG 1 cut(s) 1586
Bsp1286I GDGCHC 6 cut(s) 172, 469, 2271, 2691, 2946, 3157
Bsp1407I TGTACA 2 cut(s) 1711, 2019
Bsp1720I GCTNAGC 1 cut(s) 2685
BspACI CCGC 3 cut(s) 89, 944, 1119
BspANI GGCC 3 cut(s) 1473, 1886, 2986
BspCNI CTCAG 5 cut(s) 65, 1157, 2497, 2677, 2947
BspLI GGNNCC 9 cut(s) 61, 93, 620, 981, 1551, 1948, 1970, 2268, 2472
BspMI ACCTGC 1 cut(s) 1291
BspPI GGATC 4 cut(s) 527, 1505, 2477, 3025
BspT107I GGYRCC 2 cut(s) 91, 1549
BspTNI GGTCTC 3 cut(s) 276, 660, 2580
BsrDI GCAATG 2 cut(s) 582, 1081
BsrFI RCCGGY 1 cut(s) 140
BsrGI TGTACA 2 cut(s) 1711, 2019
BsrI ACTGG 7 cut(s) 525, 1108, 1181, 2459, 2728, 3060, 3328
BssAI RCCGGY 1 cut(s) 140
BssECI CCNNGG 7 cut(s) 398, 536, 736, 1545, 1553, 2608, 2896
BssNAI GTATAC 2 cut(s) 1980, 2293
BssSI CACGAG 2 cut(s) 449, 3006
BssT1I CCWWGG 3 cut(s) 536, 1545, 1553
Bst1107I GTATAC 2 cut(s) 1980, 2293
Bst2BI CACGAG 2 cut(s) 449, 3006
Bst2UI CCWGG 8 cut(s) 399, 738, 858, 984, 1902, 1938, 2610, 2897
BstAUI TGTACA 2 cut(s) 1711, 2019
BstC8I GCNNGC 4 cut(s) 142, 589, 1783, 2121
BstEII GGTNACC 2 cut(s) 845, 2668
BstENI CCTNNNNNAGG 1 cut(s) 1287
BstF5I GGATG 6 cut(s) 394, 441, 502, 1864, 2082, 2308
BstHHI GCGC 1 cut(s) 2221
BstMAI GTCTC 7 cut(s) 276, 660, 884, 890, 2247, 2580, 3009
BstMWI GCNNNNNNNGC 3 cut(s) 708, 3146, 3317
BstNI CCWGG 8 cut(s) 399, 738, 858, 984, 1902, 1938, 2610, 2897
BstNSI RCATGY 2 cut(s) 683, 3084
BstPAI GACNNNNGTC 1 cut(s) 3268
BstPI GGTNACC 2 cut(s) 845, 2668
BstSCI CCNGG 9 cut(s) 323, 397, 736, 856, 982, 1900, 1936, 2608, 2895
BstSFI CTRYAG 2 cut(s) 249, 1804
BstSLI GKGCMC 2 cut(s) 2946, 3157
BstV1I GCAGC 6 cut(s) 98, 1133, 1741, 3074, 3255, 3320
BstV2I GAAGAC 3 cut(s) 2136, 2626, 2717
BstX2I RGATCY 2 cut(s) 532, 2593
BstXI CCANNNNNNTGG 2 cut(s) 763, 792
BstYI RGATCY 2 cut(s) 532, 2593
BstZ17I GTATAC 2 cut(s) 1980, 2293
BsuRI GGCC 3 cut(s) 1473, 1886, 2986
BtsCI GGATG 6 cut(s) 394, 441, 502, 1864, 2082, 2308
BtsI GCAGTG 1 cut(s) 2341
BtsIMutI CAGTG 9 cut(s) 532, 561, 1707, 2341, 2540, 2735, 2886, 2946, 3053
BveI ACCTGC 1 cut(s) 1291
Cac8I GCNNGC 4 cut(s) 142, 589, 1783, 2121
CaiI CAGNNNCTG 1 cut(s) 560
CfoI GCGC 1 cut(s) 2221
Cfr10I RCCGGY 1 cut(s) 140
Cfr13I GGNCC 4 cut(s) 352, 740, 1280, 3270
CseI GACGC 1 cut(s) 3207
Csp6I GTAC 6 cut(s) 479, 542, 1305, 1712, 2020, 2374
CspCI CAANNNNNGTGG 4 cut(s) 596, 631, 1258, 1293
CviQI GTAC 6 cut(s) 479, 542, 1305, 1712, 2020, 2374
DraI TTTAAA 1 cut(s) 1110
DrdI GACNNNNNNGTC 1 cut(s) 904
DseDI GACNNNNNNGTC 1 cut(s) 904
EaeI YGGCCR 1 cut(s) 1884
Ecl136II GAGCTC 1 cut(s) 2689
Eco130I CCWWGG 3 cut(s) 536, 1545, 1553
Eco24I GRGCYC 2 cut(s) 2271, 2691
Eco31I GGTCTC 3 cut(s) 276, 660, 2580
Eco32I GATATC 1 cut(s) 2937
Eco47I GGWCC 4 cut(s) 352, 740, 1280, 3270
Eco53kI GAGCTC 1 cut(s) 2689
Eco57I CTGAAG 5 cut(s) 900, 1357, 2148, 2345, 2726
Eco88I CYCGRG 1 cut(s) 1586
Eco91I GGTNACC 2 cut(s) 845, 2668
EcoICRI GAGCTC 1 cut(s) 2689
EcoNI CCTNNNNNAGG 1 cut(s) 1287
EcoO109I RGGNCCY 1 cut(s) 740
EcoO65I GGTNACC 2 cut(s) 845, 2668
EcoRI GAATTC 4 cut(s) 644, 951, 1139, 1925
EcoRII CCWGG 8 cut(s) 397, 736, 856, 982, 1900, 1936, 2608, 2895
EcoRV GATATC 1 cut(s) 2937
EcoT14I CCWWGG 3 cut(s) 536, 1545, 1553
EcoT22I ATGCAT 2 cut(s) 502, 793
EcoT38I GRGCYC 2 cut(s) 2271, 2691
ErhI CCWWGG 3 cut(s) 536, 1545, 1553
Esp3I CGTCTC 1 cut(s) 890
FalI AAGNNNNNCTT 2 cut(s) 290, 322
FaqI GGGAC 5 cut(s) 1093, 1461, 2242, 3216, 3237
FauNDI CATATG 2 cut(s) 1045, 2749
FbaI TGATCA 1 cut(s) 342
FblI GTMKAC 3 cut(s) 1803, 1979, 2292
Fnu4HI GCNGC 7 cut(s) 87, 945, 1122, 1755, 3063, 3244, 3309
FokI GGATG 6 cut(s) 381, 448, 509, 1871, 2069, 2315
FriOI GRGCYC 2 cut(s) 2271, 2691
Fsp4HI GCNGC 7 cut(s) 87, 945, 1122, 1755, 3063, 3244, 3309
FspBI CTAG 5 cut(s) 291, 474, 1637, 1914, 3354
FspI TGCGCA 1 cut(s) 2220
GlaI GCGC 1 cut(s) 2220
GluI GCNGC 7 cut(s) 87, 945, 1122, 1755, 3063, 3244, 3309
GsaI CCCAGC 1 cut(s) 3149
GsuI CTGGAG 3 cut(s) 684, 1164, 3120
HaeIII GGCC 3 cut(s) 1473, 1886, 2986
HapII CCGG 4 cut(s) 95, 141, 324, 1975
HgaI GACGC 1 cut(s) 3207
HhaI GCGC 1 cut(s) 2221
Hin6I GCGC 1 cut(s) 2219
HinP1I GCGC 1 cut(s) 2219
HindIII AAGCTT 3 cut(s) 65, 188, 299
HpaII CCGG 4 cut(s) 95, 141, 324, 1975
HphI GGTGA 7 cut(s) 595, 742, 778, 1326, 2071, 3200, 3338
Hpy188III TCNNGA 6 cut(s) 746, 920, 977, 1261, 1366, 3285
HpyAV CCTTC 9 cut(s) 272, 487, 680, 1341, 1959, 2308, 2369, 2976, 3373
HpyCH4IV ACGT 3 cut(s) 336, 1771, 3250
HpyF10VI GCNNNNNNNGC 3 cut(s) 708, 3146, 3317
HpySE526I ACGT 3 cut(s) 336, 1771, 3250
HspAI GCGC 1 cut(s) 2219
KroI GCCGGC 1 cut(s) 140
KroNI GCCGGC 1 cut(s) 142
Ksp22I TGATCA 1 cut(s) 342
LmnI GCTCC 7 cut(s) 65, 1121, 1333, 1368, 1974, 2266, 3059
Lsp1109I GCAGC 6 cut(s) 98, 1133, 1741, 3074, 3255, 3320
LweI GCATC 7 cut(s) 171, 487, 865, 1038, 1150, 2238, 2857
MaeI CTAG 5 cut(s) 291, 474, 1637, 1914, 3354
MaeII ACGT 3 cut(s) 336, 1771, 3250
MaeIII GTNAC 7 cut(s) 845, 1614, 2538, 2668, 2752, 2881, 2918
MfeI CAATTG 2 cut(s) 757, 1866
MflI RGATCY 2 cut(s) 532, 2593
MhlI GDGCHC 6 cut(s) 172, 469, 2271, 2691, 2946, 3157
MlsI TGGCCA 1 cut(s) 1886
MluNI TGGCCA 1 cut(s) 1886
MlyI GAGTC 5 cut(s) 1220, 1871, 2546, 3044, 3127
MmeI TCCRAC 4 cut(s) 275, 596, 1714, 2208
Mox20I TGGCCA 1 cut(s) 1886
Mph1103I ATGCAT 2 cut(s) 502, 793
MroNI GCCGGC 1 cut(s) 140
MroXI GAANNNNTTC 5 cut(s) 203, 302, 1818, 2008, 3333
MscI TGGCCA 1 cut(s) 1886
MslI CAYNNNNRTG 3 cut(s) 573, 3044, 3085
Msp20I TGGCCA 1 cut(s) 1886
MspA1I CMGCKG 5 cut(s) 89, 958, 2684, 2839, 3140
MspI CCGG 4 cut(s) 95, 141, 324, 1975
MspR9I CCNGG 9 cut(s) 325, 399, 738, 858, 984, 1902, 1938, 2610, 2897
MunI CAATTG 2 cut(s) 757, 1866
Mva1269I GAATGC 4 cut(s) 5, 205, 2822, 3333
MvaI CCWGG 8 cut(s) 399, 738, 858, 984, 1902, 1938, 2610, 2897
MwoI GCNNNNNNNGC 3 cut(s) 708, 3146, 3317
NaeI GCCGGC 1 cut(s) 142
NciI CCSGG 1 cut(s) 325
NdeI CATATG 2 cut(s) 1045, 2749
NgoMIV GCCGGC 1 cut(s) 140
NlaIV GGNNCC 9 cut(s) 61, 93, 620, 981, 1551, 1948, 1970, 2268, 2472
NmuCI GTSAC 3 cut(s) 1614, 2538, 2881
NsbI TGCGCA 1 cut(s) 2220
NsiI ATGCAT 2 cut(s) 502, 793
NspI RCATGY 2 cut(s) 683, 3084
PcsI WCGNNNNNNNCGW 1 cut(s) 3274
PctI GAATGC 4 cut(s) 5, 205, 2822, 3333
PdiI GCCGGC 1 cut(s) 142
PdmI GAANNNNTTC 5 cut(s) 203, 302, 1818, 2008, 3333
PfeI GAWTC 8 cut(s) 371, 578, 1592, 2009, 2618, 2790, 3296, 3343
PflMI CCANNNNNTGG 2 cut(s) 1943, 2150
PfoI TCCNGGA 2 cut(s) 856, 1900
PkrI GCNGC 7 cut(s) 88, 946, 1123, 1756, 3064, 3245, 3310
PleI GAGTC 5 cut(s) 1220, 1870, 2545, 3043, 3127
PpsI GAGTC 5 cut(s) 1220, 1870, 2545, 3043, 3127
PpuMI RGGWCCY 1 cut(s) 740
PshAI GACNNNNGTC 1 cut(s) 3268
PshBI ATTAAT 2 cut(s) 1563, 2139
PsiI TTATAA 2 cut(s) 1431, 1989
Psp124BI GAGCTC 1 cut(s) 2691
Psp5II RGGWCCY 1 cut(s) 740
Psp6I CCWGG 8 cut(s) 397, 736, 856, 982, 1900, 1936, 2608, 2895
PspEI GGTNACC 2 cut(s) 845, 2668
PspFI CCCAGC 1 cut(s) 3145
PspGI CCWGG 8 cut(s) 397, 736, 856, 982, 1900, 1936, 2608, 2895
PspN4I GGNNCC 9 cut(s) 61, 93, 620, 981, 1551, 1948, 1970, 2268, 2472
PspPI GGNCC 4 cut(s) 352, 740, 1280, 3270
PspPPI RGGWCCY 1 cut(s) 740
PsrI GAACNNNNNNTAC 2 cut(s) 246, 278
PstNI CAGNNNCTG 1 cut(s) 560
PsuI RGATCY 2 cut(s) 532, 2593
PvuII CAGCTG 4 cut(s) 958, 2684, 2839, 3140
RsaI GTAC 6 cut(s) 480, 543, 1306, 1713, 2021, 2375
RsaNI GTAC 6 cut(s) 479, 542, 1305, 1712, 2020, 2374
RseI CAYNNNNRTG 3 cut(s) 573, 3044, 3085
SacI GAGCTC 1 cut(s) 2691
SatI GCNGC 7 cut(s) 87, 945, 1122, 1755, 3063, 3244, 3309
Sau96I GGNCC 4 cut(s) 352, 740, 1280, 3270
ScaI AGTACT 1 cut(s) 2375
SchI GAGTC 5 cut(s) 1220, 1871, 2546, 3044, 3127
ScrFI CCNGG 9 cut(s) 325, 399, 738, 858, 984, 1902, 1938, 2610, 2897
SduI GDGCHC 6 cut(s) 172, 469, 2271, 2691, 2946, 3157
SfaNI GCATC 7 cut(s) 171, 487, 865, 1038, 1150, 2238, 2857
SfcI CTRYAG 2 cut(s) 249, 1804
SinI GGWCC 4 cut(s) 352, 740, 1280, 3270
SmiMI CAYNNNNRTG 3 cut(s) 573, 3044, 3085
SmlI CTYRAG 2 cut(s) 468, 1287
SmoI CTYRAG 2 cut(s) 468, 1287
SpeI ACTAGT 1 cut(s) 290
SsiI CCGC 3 cut(s) 89, 944, 1119
SspI AATATT 3 cut(s) 1456, 1817, 2235
SspMI CTAG 5 cut(s) 291, 474, 1637, 1914, 3354
SstI GAGCTC 1 cut(s) 2691
StyD4I CCNGG 9 cut(s) 323, 397, 736, 856, 982, 1900, 1936, 2608, 2895
StyI CCWWGG 3 cut(s) 536, 1545, 1553
TaiI ACGT 3 cut(s) 339, 1774, 3253
TaqI TCGA 2 cut(s) 1191, 1244
TaqII GACCGA 1 cut(s) 2620
TatI WGTACW 4 cut(s) 478, 1711, 2019, 2373
TauI GCSGC 1 cut(s) 947
TfiI GAWTC 8 cut(s) 371, 578, 1592, 2009, 2618, 2790, 3296, 3343
TscAI CASTG 9 cut(s) 532, 561, 1714, 2341, 2547, 2735, 2886, 2946, 3060
TseFI GTSAC 3 cut(s) 1614, 2538, 2881
TseI GCWGC 6 cut(s) 86, 1121, 1754, 3062, 3243, 3308
Tsp45I GTSAC 3 cut(s) 1614, 2538, 2881
TspRI CASTG 9 cut(s) 532, 561, 1714, 2341, 2547, 2735, 2886, 2946, 3060
Van91I CCANNNNNTGG 2 cut(s) 1943, 2150
VneI GTGCAC 1 cut(s) 3153
VpaK11BI GGWCC 4 cut(s) 352, 740, 1280, 3270
VspI ATTAAT 2 cut(s) 1563, 2139
XagI CCTNNNNNAGG 1 cut(s) 1287
XceI RCATGY 2 cut(s) 683, 3084
XcmI CCANNNNNNNNNTGG 1 cut(s) 1268
XmiI GTMKAC 3 cut(s) 1803, 1979, 2292
XmnI GAANNNNTTC 5 cut(s) 203, 302, 1818, 2008, 3333
XspI CTAG 5 cut(s) 291, 474, 1637, 1914, 3354
ZrmI AGTACT 1 cut(s) 2375
Zsp2I ATGCAT 2 cut(s) 502, 793
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.