pycom16g14720

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0002042
Physical Location & Seq
Reverse (-)
10774792 .. 10780404
5613 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1209 bp
ATGGTATGTTCACTTGGAAGTGGGAGGATGGCTGTCATGGCAAGGCTTCTGGCGGGCGGGACTGTCTCACAAAGCATAACAGAAGATGTTGGCCATCAGAAGTTTGCCGCTCAAATAATTTGCAGAGAATTAAGTGAGGCAAGCGAAGCTAATTTGCTTGACGAAAAAGATATGCATGTGTTTGGTTTGAAGCCGATGGATGATCCTTTACATCTGGTGTGTTGCAATGCTTGTAAAAAACCAGTCAAGGCCAGTCAGTATGTGGCTCATGCAGAACTTTGTAGGTCCTTAAATTCTATGCAGGAAACTACTTTGGAGCTTGATGGAAGTATGGGGCAAAGGAAGCCTCCGAAGAAGGAGAGGAAAAAGTTATCAATTGCTCATTCTAACCAGTCCACTTTAGTTGGAGAGCTAGAACGATCTGAATCTATAGATGCAGATGATATCTCTGTGTCACGATTCCAGTTGGATGGGAAAATGGGAATGAATCCTGGCTCTTTTATGGAGGCAAAAATGAATTCAACTTACGCGGATGTGACAATCATGATGGATGGTTCCGGAGTTAGTCCAGGAAATACCAATGGCTCAACATCTGTGATACTTCCACCAACAAAACGATTTAAAATGGTAGCAGGTCAGCAGCTGCCACTATCAGATGATATAGGAACAGCATCTGCTGTATCAAAACTTGCAAGTACTCAGGATGCATGTCCTTATAGGGATTCTCCAAAAGGAGCCATTCCTGCAAGTGAAATACCTTATCCTGCTCTTAAGTATATGAAGTCCGGGCAAGCCCTTGAATGCTGCCTGCCAATTAAAGATTGTCCTCTTCCCCTTGCTACTAAAGTATATTACTCTCAAAGACGCAATCGGCTTCGGTCAGATCTTAGTCATCTTTATCATGAGGCAATGGCATCAACTGAGGAGCTTTGTAGTGACATGAGAGACTCACAGCATTTGCCTTCTTTACGGAAACCTGATCAAATTCTCGCACAAAATTCTGAAGTTTGCTTGGGGAACTCAGTAGGTTGCCAGCCTGATGGTGACTTCTCGAATCAGTTACCTGTGGATAATGTTCCAAGGCCTGAGGTGGCTAGTGTTGGTTTAACTAGAAGCAAAATTCTTTTGAAACCTTATTCCTTTGCGGGTAACTCAGGACAATCACTGCGGACCATGCAACAGAAAACTGGCAGTGTTCACGTTATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sgf11

Protein Analysis

403

Amino Acids

43.57

Weight (kDa)

7.08

Isoelectric Point (pI)

45.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 623
AccBSI CCGCTC 1 cut(s) 110
AccII CGCG 1 cut(s) 530
AccIII TCCGGA 1 cut(s) 557
AciI CCGC 6 cut(s) 53, 57, 108, 530, 1145, 1168
AclWI GGATC 1 cut(s) 197
AcoI YGGCCR 1 cut(s) 91
AcsI RAATTY 5 cut(s) 292, 517, 984, 997, 1119
AcuI CTGAAG 1 cut(s) 1023
AfaI GTAC 1 cut(s) 697
AflII CTTAAG 1 cut(s) 770
AgsI TTSAA 4 cut(s) 190, 522, 800, 1129
AjnI CCWGG 2 cut(s) 490, 568
AluBI AGCT 5 cut(s) 149, 319, 412, 643, 928
AluI AGCT 5 cut(s) 149, 319, 412, 643, 928
Alw26I GTCTC 2 cut(s) 70, 939
AlwI GGATC 1 cut(s) 197
AlwNI CAGNNNCTG 2 cut(s) 643, 674
Aor13HI TCCGGA 1 cut(s) 557
AoxI GGCC 3 cut(s) 91, 249, 1082
ApeKI GCWGC 3 cut(s) 640, 643, 804
ApoI RAATTY 5 cut(s) 292, 517, 984, 997, 1119
AspS9I GGNCC 2 cut(s) 285, 1170
AsuC2I CCSGG 1 cut(s) 787
AsuHPI GGTGA 1 cut(s) 1055
AvaII GGWCC 2 cut(s) 285, 1170
AxyI CCTNAGG 1 cut(s) 1086
BalI TGGCCA 1 cut(s) 93
BbvI GCAGC 3 cut(s) 630, 652, 791
BccI CCATC 8 cut(s) 22, 102, 190, 317, 464, 541, 545, 1034
BciT130I CCWGG 2 cut(s) 492, 570
BclI TGATCA 1 cut(s) 979
BcnI CCSGG 1 cut(s) 787
BcoDI GTCTC 2 cut(s) 70, 939
BfaI CTAG 3 cut(s) 413, 1095, 1110
BfmI CTRYAG 1 cut(s) 429
BfrI CTTAAG 1 cut(s) 770
BfuAI ACCTGC 1 cut(s) 623
BglII AGATCT 1 cut(s) 883
BisI GCNGC 4 cut(s) 108, 641, 644, 805
BlsI GCNGC 4 cut(s) 109, 642, 645, 806
BmcAI AGTACT 1 cut(s) 697
Bme1390I CCNGG 3 cut(s) 492, 570, 787
Bme18I GGWCC 2 cut(s) 285, 1170
BmgT120I GGNCC 2 cut(s) 285, 1170
BmiI GGNNCC 2 cut(s) 556, 736
BmrFI CCNGG 3 cut(s) 492, 570, 787
BmsI GCATC 4 cut(s) 424, 680, 694, 923
BpuMI CCSGG 1 cut(s) 787
BsaBI GATNNNNATC 1 cut(s) 424
BsaJI CCNNGG 1 cut(s) 1079
BsaWI WCCGGW 1 cut(s) 557
Bse1I ACTGG 5 cut(s) 242, 252, 391, 463, 1192
Bse21I CCTNAGG 1 cut(s) 1086
Bse3DI GCAATG 2 cut(s) 232, 915
Bse8I GATNNNNATC 1 cut(s) 424
BseAI TCCGGA 1 cut(s) 557
BseBI CCWGG 2 cut(s) 492, 570
BseDI CCNNGG 1 cut(s) 1079
BseGI GGATG 6 cut(s) 33, 205, 475, 538, 556, 709
BseJI GATNNNNATC 1 cut(s) 424
BseMI GCAATG 2 cut(s) 232, 915
BseMII CTCAG 5 cut(s) 713, 912, 1035, 1077, 1167
BseNI ACTGG 5 cut(s) 242, 252, 391, 463, 1192
BseRI GAGGAG 1 cut(s) 938
BseXI GCAGC 3 cut(s) 630, 652, 791
Bsh1236I CGCG 1 cut(s) 530
BshFI GGCC 3 cut(s) 93, 251, 1084
BsiSI CCGG 2 cut(s) 558, 786
BslFI GGGAC 1 cut(s) 73
BsmAI GTCTC 2 cut(s) 70, 939
BsmFI GGGAC 1 cut(s) 73
BsmI GAATGC 1 cut(s) 806
BsnI GGCC 3 cut(s) 93, 251, 1084
Bsp13I TCCGGA 1 cut(s) 557
Bsp143I GATC 4 cut(s) 202, 419, 883, 979
BspACI CCGC 6 cut(s) 53, 57, 108, 530, 1145, 1168
BspANI GGCC 3 cut(s) 93, 251, 1084
BspCNI CTCAG 5 cut(s) 712, 913, 1034, 1078, 1166
BspEI TCCGGA 1 cut(s) 557
BspFNI CGCG 1 cut(s) 530
BspHI TCATGA 2 cut(s) 543, 901
BspLI GGNNCC 2 cut(s) 556, 736
BspMI ACCTGC 1 cut(s) 623
BspPI GGATC 1 cut(s) 197
BspTI CTTAAG 1 cut(s) 770
BsrBI CCGCTC 1 cut(s) 110
BsrDI GCAATG 2 cut(s) 232, 915
BsrI ACTGG 5 cut(s) 242, 252, 391, 463, 1192
BssECI CCNNGG 1 cut(s) 1079
BssMI GATC 4 cut(s) 202, 419, 883, 979
BssT1I CCWWGG 1 cut(s) 1079
Bst2UI CCWGG 2 cut(s) 492, 570
Bst4CI ACNGT 1 cut(s) 64
Bst6I CTCTTC 1 cut(s) 834
BstAFI CTTAAG 1 cut(s) 770
BstC8I GCNNGC 5 cut(s) 55, 142, 792, 809, 1034
BstDEI CTNAG 6 cut(s) 699, 887, 921, 1021, 1086, 1153
BstF5I GGATG 6 cut(s) 33, 205, 475, 538, 556, 709
BstFNI CGCG 1 cut(s) 530
BstKTI GATC 4 cut(s) 205, 422, 886, 982
BstMAI GTCTC 2 cut(s) 70, 939
BstMBI GATC 4 cut(s) 202, 419, 883, 979
BstMWI GCNNNNNNNGC 5 cut(s) 38, 146, 343, 743, 1174
BstNI CCWGG 2 cut(s) 492, 570
BstNSI RCATGY 2 cut(s) 179, 711
BstSCI CCNGG 3 cut(s) 490, 568, 785
BstSFI CTRYAG 1 cut(s) 429
BstUI CGCG 1 cut(s) 530
BstV1I GCAGC 3 cut(s) 630, 652, 791
BstX2I RGATCY 1 cut(s) 883
BstXI CCANNNNNNTGG 2 cut(s) 470, 1040
BstYI RGATCY 1 cut(s) 883
Bsu36I CCTNAGG 1 cut(s) 1086
BsuRI GGCC 3 cut(s) 93, 251, 1084
BtsCI GGATG 6 cut(s) 33, 205, 475, 538, 556, 709
BtsI GCAGTG 2 cut(s) 1163, 1198
BtsIMutI CAGTG 2 cut(s) 1163, 1198
BveI ACCTGC 1 cut(s) 623
Cac8I GCNNGC 5 cut(s) 55, 142, 792, 809, 1034
CaiI CAGNNNCTG 2 cut(s) 643, 674
CciI TCATGA 2 cut(s) 543, 901
Cfr13I GGNCC 2 cut(s) 285, 1170
CseI GACGC 1 cut(s) 873
Csp6I GTAC 1 cut(s) 696
CspCI CAANNNNNGTGG 2 cut(s) 385, 420
CviAII CATG 8 cut(s) 37, 176, 269, 544, 708, 902, 940, 1174
CviQI GTAC 1 cut(s) 696
DdeI CTNAG 6 cut(s) 699, 887, 921, 1021, 1086, 1153
DpnI GATC 4 cut(s) 204, 421, 885, 981
DpnII GATC 4 cut(s) 202, 419, 883, 979
DraI TTTAAA 1 cut(s) 622
EaeI YGGCCR 1 cut(s) 91
Eam1104I CTCTTC 1 cut(s) 834
EarI CTCTTC 1 cut(s) 834
Eco130I CCWWGG 1 cut(s) 1079
Eco147I AGGCCT 1 cut(s) 1084
Eco32I GATATC 1 cut(s) 445
Eco47I GGWCC 2 cut(s) 285, 1170
Eco57I CTGAAG 1 cut(s) 1023
Eco81I CCTNAGG 1 cut(s) 1086
EcoO109I RGGNCCY 1 cut(s) 285
EcoRI GAATTC 1 cut(s) 517
EcoRII CCWGG 2 cut(s) 490, 568
EcoRV GATATC 1 cut(s) 445
EcoT14I CCWWGG 1 cut(s) 1079
EcoT22I ATGCAT 2 cut(s) 177, 709
ErhI CCWWGG 1 cut(s) 1079
FaeI CATG 8 cut(s) 40, 179, 272, 547, 711, 905, 943, 1177
FaqI GGGAC 1 cut(s) 73
FatI CATG 8 cut(s) 36, 175, 268, 543, 707, 901, 939, 1173
FauI CCCGC 3 cut(s) 46, 50, 1138
FbaI TGATCA 1 cut(s) 979
Fnu4HI GCNGC 4 cut(s) 108, 641, 644, 805
FokI GGATG 6 cut(s) 40, 212, 482, 545, 563, 716
Fsp4HI GCNGC 4 cut(s) 108, 641, 644, 805
FspBI CTAG 3 cut(s) 413, 1095, 1110
GluI GCNGC 4 cut(s) 108, 641, 644, 805
HaeIII GGCC 3 cut(s) 93, 251, 1084
HapII CCGG 2 cut(s) 558, 786
HgaI GACGC 1 cut(s) 873
Hin1II CATG 8 cut(s) 40, 179, 272, 547, 711, 905, 943, 1177
HinfI GANTC 6 cut(s) 425, 459, 487, 722, 947, 1054
HpaII CCGG 2 cut(s) 558, 786
HphI GGTGA 1 cut(s) 1055
Hpy166II GTNNAC 3 cut(s) 11, 396, 1198
Hpy188I TCNGA 6 cut(s) 99, 351, 424, 655, 883, 1003
Hpy188III TCNNGA 7 cut(s) 456, 544, 558, 701, 902, 1051, 1155
Hpy8I GTNNAC 3 cut(s) 11, 396, 1198
HpyAV CCTTC 2 cut(s) 349, 972
HpyCH4III ACNGT 1 cut(s) 64
HpyCH4IV ACGT 1 cut(s) 1200
HpyF10VI GCNNNNNNNGC 5 cut(s) 38, 146, 343, 743, 1174
HpyF3I CTNAG 6 cut(s) 699, 887, 921, 1021, 1086, 1153
HpySE526I ACGT 1 cut(s) 1200
Hsp92II CATG 8 cut(s) 40, 179, 272, 547, 711, 905, 943, 1177
Kpn2I TCCGGA 1 cut(s) 557
Ksp22I TGATCA 1 cut(s) 979
Kzo9I GATC 4 cut(s) 202, 419, 883, 979
LmnI GCTCC 3 cut(s) 316, 734, 925
Lsp1109I GCAGC 3 cut(s) 630, 652, 791
LweI GCATC 4 cut(s) 424, 680, 694, 923
MaeI CTAG 3 cut(s) 413, 1095, 1110
MaeII ACGT 1 cut(s) 1200
MaeIII GTNAC 6 cut(s) 453, 535, 935, 1043, 1059, 1148
MalI GATC 4 cut(s) 204, 421, 885, 981
MbiI CCGCTC 1 cut(s) 110
MboI GATC 4 cut(s) 202, 419, 883, 979
MboII GAAGA 3 cut(s) 95, 364, 821
MfeI CAATTG 1 cut(s) 375
MflI RGATCY 1 cut(s) 883
MlsI TGGCCA 1 cut(s) 93
MluNI TGGCCA 1 cut(s) 93
MlyI GAGTC 1 cut(s) 941
MmeI TCCRAC 2 cut(s) 385, 447
MnlI CCTC 9 cut(s) 18, 130, 354, 357, 499, 837, 898, 916, 1081
Mox20I TGGCCA 1 cut(s) 93
Mph1103I ATGCAT 2 cut(s) 177, 709
MroI TCCGGA 1 cut(s) 557
MscI TGGCCA 1 cut(s) 93
MseI TTAA 6 cut(s) 131, 290, 621, 771, 816, 1106
Msp20I TGGCCA 1 cut(s) 93
MspA1I CMGCKG 1 cut(s) 643
MspCI CTTAAG 1 cut(s) 770
MspI CCGG 2 cut(s) 558, 786
MspR9I CCNGG 3 cut(s) 492, 570, 787
MunI CAATTG 1 cut(s) 375
Mva1269I GAATGC 1 cut(s) 806
MvaI CCWGG 2 cut(s) 492, 570
MvnI CGCG 1 cut(s) 530
MwoI GCNNNNNNNGC 5 cut(s) 38, 146, 343, 743, 1174
NciI CCSGG 1 cut(s) 787
NdeII GATC 4 cut(s) 202, 419, 883, 979
NlaIII CATG 8 cut(s) 40, 179, 272, 547, 711, 905, 943, 1177
NlaIV GGNNCC 2 cut(s) 556, 736
NmuCI GTSAC 4 cut(s) 453, 535, 935, 1043
NsiI ATGCAT 2 cut(s) 177, 709
NspI RCATGY 2 cut(s) 179, 711
PagI TCATGA 2 cut(s) 543, 901
PceI AGGCCT 1 cut(s) 1084
PctI GAATGC 1 cut(s) 806
PfeI GAWTC 5 cut(s) 425, 459, 487, 722, 1054
PfoI TCCNGGA 1 cut(s) 568
PkrI GCNGC 4 cut(s) 109, 642, 645, 806
PleI GAGTC 1 cut(s) 941
PpsI GAGTC 1 cut(s) 941
PpuMI RGGWCCY 1 cut(s) 285
Psp5II RGGWCCY 1 cut(s) 285
Psp6I CCWGG 2 cut(s) 490, 568
PspGI CCWGG 2 cut(s) 490, 568
PspN4I GGNNCC 2 cut(s) 556, 736
PspPI GGNCC 2 cut(s) 285, 1170
PspPPI RGGWCCY 1 cut(s) 285
PstNI CAGNNNCTG 2 cut(s) 643, 674
PsuI RGATCY 1 cut(s) 883
PvuII CAGCTG 1 cut(s) 643
RsaI GTAC 1 cut(s) 697
RsaNI GTAC 1 cut(s) 696
SaqAI TTAA 6 cut(s) 131, 290, 621, 771, 816, 1106
SatI GCNGC 4 cut(s) 108, 641, 644, 805
Sau3AI GATC 4 cut(s) 202, 419, 883, 979
Sau96I GGNCC 2 cut(s) 285, 1170
ScaI AGTACT 1 cut(s) 697
SchI GAGTC 1 cut(s) 941
ScrFI CCNGG 3 cut(s) 492, 570, 787
SfaNI GCATC 4 cut(s) 424, 680, 694, 923
SfcI CTRYAG 1 cut(s) 429
SinI GGWCC 2 cut(s) 285, 1170
SmlI CTYRAG 1 cut(s) 770
SmoI CTYRAG 1 cut(s) 770
SseBI AGGCCT 1 cut(s) 1084
SsiI CCGC 6 cut(s) 53, 57, 108, 530, 1145, 1168
SspMI CTAG 3 cut(s) 413, 1095, 1110
StuI AGGCCT 1 cut(s) 1084
StyD4I CCNGG 3 cut(s) 490, 568, 785
StyI CCWWGG 1 cut(s) 1079
TaaI ACNGT 1 cut(s) 64
TaiI ACGT 1 cut(s) 1203
TaqI TCGA 1 cut(s) 1052
TaqII GACCGA 1 cut(s) 867
TatI WGTACW 1 cut(s) 695
TauI GCSGC 1 cut(s) 110
TfiI GAWTC 5 cut(s) 425, 459, 487, 722, 1054
Tru1I TTAA 6 cut(s) 131, 290, 621, 771, 816, 1106
Tru9I TTAA 6 cut(s) 131, 290, 621, 771, 816, 1106
TscAI CASTG 2 cut(s) 1170, 1198
TseFI GTSAC 4 cut(s) 453, 535, 935, 1043
TseI GCWGC 3 cut(s) 640, 643, 804
Tsp45I GTSAC 4 cut(s) 453, 535, 935, 1043
TspDTI ATGAA 3 cut(s) 500, 530, 794
TspGWI ACGGA 1 cut(s) 985
TspRI CASTG 2 cut(s) 1170, 1198
Vha464I CTTAAG 1 cut(s) 770
VpaK11BI GGWCC 2 cut(s) 285, 1170
XapI RAATTY 5 cut(s) 292, 517, 984, 997, 1119
XceI RCATGY 2 cut(s) 179, 711
XcmI CCANNNNNNNNNTGG 1 cut(s) 259
XspI CTAG 3 cut(s) 413, 1095, 1110
ZrmI AGTACT 1 cut(s) 697
Zsp2I ATGCAT 2 cut(s) 177, 709
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.