Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0011870

Physical Location & Seq

Genomic Coordinates Forward (+)

14047277 .. 14048821

Gene Structure 1545 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGCAACTTCCTCTTCTTCCCATCTGAGTGAATGGAAAGGAAAAAAAAAAGGATCGATCATTTTCCACTTTAAAGAAACAAGGTATAAAAAAGGACCCGTTTATGAAATTTATTATCTGGATGGGAATCAAGAACAAGAAAATTCAAAGTTAGAAATATTAAAAAAAAAAAAAAAAGATATCTTCTGGTTTGAAAAACTTATTGTGACTATTCTTTTCGACTATAAACGTTGGAACTGTCCGTTACGATATATAAAAAACAGTCGATTTGAAAATGATGGAAAAGAAAGAATATCTTTTACGTACCCACCCAGTTTAGCAACTTTTTTTGAAATGATACAAAGAAAGATGTCTCTGTTCACAAAAGAAACATTCCCCTCTAATGAATTTTATAATCATTGGAGTTATACCAACGAACATAAAAAGAAAAACCTAAGGAAGCCCTTATATGATCGATCTTTCATCAATGGACCCTACCGTGGACGAATCAAAAAATTGTTTACACTCTCAAACATAAATGAAGCTTCTGTAAAAAATTACAAGATTCAGATAAATAAATTTCATGAAATGTTTTATTTATTAAATTTAATCAATGAATTGGTTGTAAAATACACATCAAGTTTTAATTTTAAAAGACTGTTTTTCGTTACCGAACACGAAGAACTAAGAATTGATTCAGAGGATCGAATCAAAATTTTAAAATTATTATTTGATGCAAGTAGAATTAAATTAATAAAAAAAGTTCCTCGATGGTCATACAAATTAACCAACGATTTTGAACAACAGGAGGGGGAAACCAAAGAAACTGTGGTAGCGGATCATCAAATTCATTCAAGAAAATCCAAACGTGTAGTGATTTTAACTGATAACCAACAAAATACTGATGCTTATACTAATACCAAAGAAACTAATAATACTGATCAAACAGACATAATCAAAGGCTCCATTCGTGCTCAAAGACGTAAAAGAGTTACTTGGGAACTCTTTGAAGCAAATGCGCATTCCCCTCTTTTTTTGGACCGAATAGACATTTTTTTTTTTTTATATTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0008104 GO:0008150 GO:0008565 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0015031 GO:0015833 GO:0016020 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0033036 GO:0042170 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0051179 GO:0051234 GO:0071702 GO:0071705

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ycf1

Protein Analysis

351

Amino Acids

42.25

Weight (kDa)

9.68

Isoelectric Point (pI)

34.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ycf1	PF05758	13 - 151	1.4e-43	Ycf1
Ycf1	PF05758	190 - 349	2.8e-43	Ycf1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07739 ATCG01000 ATCG01130 ATMG00370
malus_domestica	MD05G1133100.v1.1 MD10G1298900.v1.1 MD16G1210100.v1.1
pyrus_communis	pycom12397g00110 pycom12397g00120 pycom14g17830 pycom16g17770
rosa_chinensis	RchiOBHm_Chr2g0173971 RchiOBHm_Chr4g0392781 RchiOBHm_Chr4g0392791 RchiOBHm_Chr5g0061381 RchiOBHm_Chr7g0221181
rosa_laevigata	RLG00000037097
rosa_roxburghii	Rroxscaffold_4G00323440
rosa_wichuraiana	Rw0G012090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	393
Acc16I	TGCGCA	1 cut(s)	999
AciI	CCGC	1 cut(s)	815
AclI	AACGTT	1 cut(s)	229
AclWI	GGATC	3 cut(s)	61, 690, 825
AcsI	RAATTY	7 cut(s)	108, 142, 386, 557, 583, 693, 825
AfaI	GTAC	1 cut(s)	305
AfiI	CCNNNNNNNGG	1 cut(s)	479
AflIII	ACRYGT	1 cut(s)	847
AgsI	TTSAA	7 cut(s)	147, 194, 272, 332, 779, 834, 989
AluBI	AGCT	1 cut(s)	524
AluI	AGCT	1 cut(s)	524
Alw21I	GWGCWC	1 cut(s)	955
Alw26I	GTCTC	1 cut(s)	357
AlwI	GGATC	3 cut(s)	61, 690, 825
ApoI	RAATTY	7 cut(s)	108, 142, 386, 557, 583, 693, 825
AseI	ATTAAT	1 cut(s)	731
Asp700I	GAANNNNTTC	1 cut(s)	673
AspLEI	GCGC	1 cut(s)	1000
AspS9I	GGNCC	3 cut(s)	95, 470, 1018
AvaII	GGWCC	3 cut(s)	95, 470, 1018
AxyI	CCTNAGG	1 cut(s)	434
Bbv12I	GWGCWC	1 cut(s)	955
BccI	CCATC	4 cut(s)	30, 116, 272, 744
BclI	TGATCA	1 cut(s)	919
BcoDI	GTCTC	1 cut(s)	357
Bme18I	GGWCC	3 cut(s)	95, 470, 1018
BmgT120I	GGNCC	3 cut(s)	95, 470, 1018
BmiI	GGNNCC	3 cut(s)	97, 472, 943
BmrI	ACTGGG	1 cut(s)	306
BmsI	GCATC	2 cut(s)	703, 874
BmuI	ACTGGG	1 cut(s)	306
Bsa29I	ATCGAT	2 cut(s)	56, 454
BsaAI	YACGTR	1 cut(s)	303
BsaBI	GATNNNNATC	1 cut(s)	126
BsaJI	CCNNGG	1 cut(s)	478
Bsc4I	CCNNNNNNNGG	1 cut(s)	479
Bse1I	ACTGG	1 cut(s)	312
Bse21I	CCTNAGG	1 cut(s)	434
Bse8I	GATNNNNATC	1 cut(s)	126
BseCI	ATCGAT	2 cut(s)	56, 454
BseDI	CCNNGG	1 cut(s)	478
BseGI	GGATG	1 cut(s)	127
BseJI	GATNNNNATC	1 cut(s)	126
BseLI	CCNNNNNNNGG	1 cut(s)	479
BseMII	CTCAG	1 cut(s)	17
BseNI	ACTGG	1 cut(s)	312
BshVI	ATCGAT	2 cut(s)	56, 454
BsiHKAI	GWGCWC	1 cut(s)	955
BslI	CCNNNNNNNGG	1 cut(s)	479
BsmAI	GTCTC	1 cut(s)	357
BsmI	GAATGC	1 cut(s)	1000
Bsp1286I	GDGCHC	1 cut(s)	955
Bsp143I	GATC	7 cut(s)	53, 57, 451, 455, 682, 817, 919
BspACI	CCGC	1 cut(s)	815
BspCNI	CTCAG	1 cut(s)	18
BspDI	ATCGAT	2 cut(s)	56, 454
BspHI	TCATGA	1 cut(s)	562
BspLI	GGNNCC	3 cut(s)	97, 472, 943
BspPI	GGATC	3 cut(s)	61, 690, 825
BsrI	ACTGG	1 cut(s)	312
BssECI	CCNNGG	1 cut(s)	478
BssMI	GATC	7 cut(s)	53, 57, 451, 455, 682, 817, 919
Bst4CI	ACNGT	5 cut(s)	239, 263, 479, 639, 808
Bst6I	CTCTTC	1 cut(s)	19
BstBAI	YACGTR	1 cut(s)	303
BstDEI	CTNAG	3 cut(s)	26, 434, 665
BstDSI	CCRYGG	1 cut(s)	478
BstF5I	GGATG	1 cut(s)	127
BstHHI	GCGC	1 cut(s)	1000
BstKTI	GATC	7 cut(s)	56, 60, 454, 458, 685, 820, 922
BstMAI	GTCTC	1 cut(s)	357
BstMBI	GATC	7 cut(s)	53, 57, 451, 455, 682, 817, 919
BstSNI	TACGTA	1 cut(s)	303
Bsu15I	ATCGAT	2 cut(s)	56, 454
Bsu36I	CCTNAGG	1 cut(s)	434
BsuTUI	ATCGAT	2 cut(s)	56, 454
BtgI	CCRYGG	1 cut(s)	478
BtsCI	GGATG	1 cut(s)	127
CciI	TCATGA	1 cut(s)	562
CfoI	GCGC	1 cut(s)	1000
Cfr13I	GGNCC	3 cut(s)	95, 470, 1018
ClaI	ATCGAT	2 cut(s)	56, 454
Csp6I	GTAC	1 cut(s)	304
CviAII	CATG	1 cut(s)	563
CviJI	RGCY	3 cut(s)	442, 524, 942
CviKI_1	RGCY	3 cut(s)	442, 524, 942
CviQI	GTAC	1 cut(s)	304
DdeI	CTNAG	3 cut(s)	26, 434, 665
DpnI	GATC	7 cut(s)	55, 59, 453, 457, 684, 819, 921
DpnII	GATC	7 cut(s)	53, 57, 451, 455, 682, 817, 919
DraI	TTTAAA	3 cut(s)	73, 631, 699
Eam1104I	CTCTTC	1 cut(s)	19
EarI	CTCTTC	1 cut(s)	19
Eco105I	TACGTA	1 cut(s)	303
Eco32I	GATATC	1 cut(s)	181
Eco47I	GGWCC	3 cut(s)	95, 470, 1018
Eco81I	CCTNAGG	1 cut(s)	434
EcoO109I	RGGNCCY	1 cut(s)	95
EcoRV	GATATC	1 cut(s)	181
FaeI	CATG	1 cut(s)	566
FalI	AAGNNNNNCTT	4 cut(s)	280, 312, 958, 990
FatI	CATG	1 cut(s)	562
FbaI	TGATCA	1 cut(s)	919
FokI	GGATG	1 cut(s)	134
FspAI	RTGCGCAY	1 cut(s)	999
FspI	TGCGCA	1 cut(s)	999
GlaI	GCGC	1 cut(s)	999
HhaI	GCGC	1 cut(s)	1000
Hin1II	CATG	1 cut(s)	566
Hin6I	GCGC	1 cut(s)	998
HinP1I	GCGC	1 cut(s)	998
HindIII	AAGCTT	1 cut(s)	522
HinfI	GANTC	5 cut(s)	127, 486, 544, 674, 687
Hpy166II	GTNNAC	3 cut(s)	360, 482, 501
Hpy188I	TCNGA	4 cut(s)	27, 549, 679, 1052
Hpy188III	TCNNGA	4 cut(s)	119, 131, 563, 834
Hpy8I	GTNNAC	3 cut(s)	360, 482, 501
HpyCH4III	ACNGT	5 cut(s)	239, 263, 479, 639, 808
HpyCH4IV	ACGT	4 cut(s)	229, 302, 847, 961
HpyCH4V	TGCA	1 cut(s)	716
HpyF3I	CTNAG	3 cut(s)	26, 434, 665
HpySE526I	ACGT	4 cut(s)	229, 302, 847, 961
Hsp92II	CATG	1 cut(s)	566
HspAI	GCGC	1 cut(s)	998
Ksp22I	TGATCA	1 cut(s)	919
Kzo9I	GATC	7 cut(s)	53, 57, 451, 455, 682, 817, 919
LmnI	GCTCC	1 cut(s)	947
LpnPI	CCDG	4 cut(s)	104, 172, 325, 770
LweI	GCATC	2 cut(s)	703, 874
MaeII	ACGT	4 cut(s)	229, 302, 847, 961
MaeIII	GTNAC	4 cut(s)	205, 243, 646, 970
MalI	GATC	7 cut(s)	55, 59, 453, 457, 684, 819, 921
MboI	GATC	7 cut(s)	53, 57, 451, 455, 682, 817, 919
MboII	GAAGA	4 cut(s)	6, 9, 175, 671
MhlI	GDGCHC	1 cut(s)	955
MmeI	TCCRAC	1 cut(s)	212
MnlI	CCTC	6 cut(s)	22, 388, 673, 756, 781, 1017
MroXI	GAANNNNTTC	1 cut(s)	673
MslI	CAYNNNNRTG	1 cut(s)	27
Mva1269I	GAATGC	1 cut(s)	1000
NdeII	GATC	7 cut(s)	53, 57, 451, 455, 682, 817, 919
NlaIII	CATG	1 cut(s)	566
NlaIV	GGNNCC	3 cut(s)	97, 472, 943
NmuCI	GTSAC	1 cut(s)	205
NsbI	TGCGCA	1 cut(s)	999
PagI	TCATGA	1 cut(s)	562
PctI	GAATGC	1 cut(s)	1000
PdmI	GAANNNNTTC	1 cut(s)	673
PfeI	GAWTC	5 cut(s)	127, 486, 544, 674, 687
Ppu21I	YACGTR	1 cut(s)	303
PpuMI	RGGWCCY	1 cut(s)	95
PshBI	ATTAAT	1 cut(s)	731
PsiI	TTATAA	1 cut(s)	393
Psp1406I	AACGTT	1 cut(s)	229
Psp5II	RGGWCCY	1 cut(s)	95
PspN4I	GGNNCC	3 cut(s)	97, 472, 943
PspPI	GGNCC	3 cut(s)	95, 470, 1018
PspPPI	RGGWCCY	1 cut(s)	95
RsaI	GTAC	1 cut(s)	305
RsaNI	GTAC	1 cut(s)	304
RseI	CAYNNNNRTG	1 cut(s)	27
Sau3AI	GATC	7 cut(s)	53, 57, 451, 455, 682, 817, 919
Sau96I	GGNCC	3 cut(s)	95, 470, 1018
SduI	GDGCHC	1 cut(s)	955
SetI	ASST	7 cut(s)	86, 232, 305, 435, 526, 850, 964
SfaNI	GCATC	2 cut(s)	703, 874
SinI	GGWCC	3 cut(s)	95, 470, 1018
SmiMI	CAYNNNNRTG	1 cut(s)	27
SnaBI	TACGTA	1 cut(s)	303
SsiI	CCGC	1 cut(s)	815
SspI	AATATT	1 cut(s)	159
TaaI	ACNGT	5 cut(s)	239, 263, 479, 639, 808
TaiI	ACGT	4 cut(s)	232, 305, 850, 964
TaqI	TCGA	6 cut(s)	56, 219, 265, 454, 685, 748
TaqII	GACCGA	1 cut(s)	1035
TfiI	GAWTC	5 cut(s)	127, 486, 544, 674, 687
TseFI	GTSAC	1 cut(s)	205
Tsp45I	GTSAC	1 cut(s)	205
TspDTI	ATGAA	8 cut(s)	120, 399, 451, 534, 551, 579, 609, 818
TspGWI	ACGGA	1 cut(s)	231
VpaK11BI	GGWCC	3 cut(s)	95, 470, 1018
VspI	ATTAAT	1 cut(s)	731
XapI	RAATTY	7 cut(s)	108, 142, 386, 557, 583, 693, 825
XcmI	CCANNNNNNNNNTGG	1 cut(s)	805
XmnI	GAANNNNTTC	1 cut(s)	673

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.