Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0005657

Physical Location & Seq

Genomic Coordinates Forward (+)

15452275 .. 15453001

Gene Structure 727 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGAAACTAACTGTATTTTTCCTCTGCAACTTCGCCGACTCCTGCTCAGTTACCTCTCCACCTTCTTCATCGTCATCGTCTTCCCAAACACTCCAAACCCACATTCCATTTCTCCCCCAAAATCCCACCTATTTCCGCCATTCCCAACTTGCCATAGTCACCGGAACAAGCTCCCACTGTCTGTCTCTACCCTATTTCTTTCTCTCTAAACCTTTCTTTTCCTCCACCCCACCGACCCAAGATCCAGATCGATCTGAATTAGCTCAGTCTCTCTCATCTAAGCTCCTACAGGATTCTAGCTCCGACCCCCTCTCCGTAACCCAACGCCTCCAATTGAGCTTCTCCCACATCACCCCGACAGCTCCCCTGGTCCTTAACATACTCAATCAGTCCCCCGAGGCCAGCCGTACGGTTTTAGGGTTTAACCAGTGGCTTAAGCCCAGCACGGGCTTGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

153

Amino Acids

16.6

Weight (kDa)

7.78

Isoelectric Point (pI)

72.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005657)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60960
fragaria_vesca	FvH4_5g29994 FvH4_5g29994 FvH4_5g29994 FvH4_7g15150
malus_domestica	MD06G1203500.v1.1 MD14G1214300.v1.1
prunus_persica	Prupe.5G207600_v2.0.a1
pyrus_communis	pycom06g18160 pycom14g17770 pycom16g18740
rosa_chinensis	RchiOBHm_Chr7g0224161 RchiOBHm_Chr7g0224171
rosa_laevigata	RLG00000001915
rosa_multiflora	Rmu_co8487915.1_g000001 Rmu_sc0008008.1_g000001 Rmu_sc0023501.1_g000005
rosa_roxburghii	Rroxscaffold_3G00235130 Rroxscaffold_3G00235140 Rroxscaffold_3G00235150
rosa_rugosa	Rorug07G0199800 Rorug07G0221500
rosa_samantha	Rh7AG365400 Rh7BG357100 Rh7CG384300 Rh7DG360200
rosa_wichuraiana	Rw7G030930 Rw7G030940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	136
AclWI	GGATC	1 cut(s)	236
AfaI	GTAC	1 cut(s)	409
AfiI	CCNNNNNNNGG	1 cut(s)	446
AflII	CTTAAG	1 cut(s)	434
AjnI	CCWGG	1 cut(s)	366
AjuI	GAANNNNNNNTTGG	2 cut(s)	87, 119
AluBI	AGCT	6 cut(s)	171, 263, 283, 300, 339, 362
AluI	AGCT	6 cut(s)	171, 263, 283, 300, 339, 362
Alw26I	GTCTC	2 cut(s)	189, 273
AlwI	GGATC	1 cut(s)	236
Ama87I	CYCGRG	1 cut(s)	395
AoxI	GGCC	1 cut(s)	399
AspS9I	GGNCC	1 cut(s)	370
AsuHPI	GGTGA	2 cut(s)	151, 343
AvaI	CYCGRG	1 cut(s)	395
AvaII	GGWCC	1 cut(s)	370
BbsI	GAAGAC	1 cut(s)	72
BceAI	ACGGC	1 cut(s)	390
BciT130I	CCWGG	1 cut(s)	368
BcoDI	GTCTC	2 cut(s)	189, 273
BfaI	CTAG	1 cut(s)	297
BfmI	CTRYAG	1 cut(s)	287
BfrI	CTTAAG	1 cut(s)	434
Bme1390I	CCNGG	1 cut(s)	368
Bme18I	GGWCC	1 cut(s)	370
BmeT110I	CYCGRG	1 cut(s)	395
BmgT120I	GGNCC	1 cut(s)	370
BmrFI	CCNGG	1 cut(s)	368
BpiI	GAAGAC	1 cut(s)	72
Bsa29I	ATCGAT	1 cut(s)	250
BsaBI	GATNNNNATC	1 cut(s)	246
BsaJI	CCNNGG	2 cut(s)	366, 396
BsaWI	WCCGGW	1 cut(s)	161
BsaXI	ACNNNNNCTCC	2 cut(s)	296, 326
Bsc4I	CCNNNNNNNGG	1 cut(s)	446
Bse1I	ACTGG	1 cut(s)	427
Bse8I	GATNNNNATC	1 cut(s)	246
BseBI	CCWGG	1 cut(s)	368
BseCI	ATCGAT	1 cut(s)	250
BseDI	CCNNGG	2 cut(s)	366, 396
BseJI	GATNNNNATC	1 cut(s)	246
BseLI	CCNNNNNNNGG	1 cut(s)	446
BseMII	CTCAG	2 cut(s)	60, 278
BseNI	ACTGG	1 cut(s)	427
BseYI	CCCAGC	1 cut(s)	440
BshFI	GGCC	1 cut(s)	401
BshVI	ATCGAT	1 cut(s)	250
BsiHKCI	CYCGRG	1 cut(s)	395
BsiSI	CCGG	1 cut(s)	162
BsiWI	CGTACG	1 cut(s)	407
BslFI	GGGAC	1 cut(s)	376
BslI	CCNNNNNNNGG	1 cut(s)	446
BsmAI	GTCTC	2 cut(s)	189, 273
BsmFI	GGGAC	1 cut(s)	376
BsnI	GGCC	1 cut(s)	401
BsoBI	CYCGRG	1 cut(s)	395
Bsp143I	GATC	3 cut(s)	241, 247, 251
BspACI	CCGC	1 cut(s)	136
BspANI	GGCC	1 cut(s)	401
BspCNI	CTCAG	2 cut(s)	59, 277
BspDI	ATCGAT	1 cut(s)	250
BspPI	GGATC	1 cut(s)	236
BspTI	CTTAAG	1 cut(s)	434
BsrI	ACTGG	1 cut(s)	427
BssECI	CCNNGG	2 cut(s)	366, 396
BssMI	GATC	3 cut(s)	241, 247, 251
Bst2UI	CCWGG	1 cut(s)	368
Bst4CI	ACNGT	3 cut(s)	13, 179, 412
BstAFI	CTTAAG	1 cut(s)	434
BstC8I	GCNNGC	1 cut(s)	403
BstDEI	CTNAG	4 cut(s)	46, 264, 279, 456
BstKTI	GATC	3 cut(s)	244, 250, 254
BstMAI	GTCTC	2 cut(s)	189, 273
BstMBI	GATC	3 cut(s)	241, 247, 251
BstNI	CCWGG	1 cut(s)	368
BstSCI	CCNGG	1 cut(s)	366
BstSFI	CTRYAG	1 cut(s)	287
BstV2I	GAAGAC	1 cut(s)	72
BstX2I	RGATCY	1 cut(s)	241
BstYI	RGATCY	1 cut(s)	241
Bsu15I	ATCGAT	1 cut(s)	250
BsuRI	GGCC	1 cut(s)	401
BsuTUI	ATCGAT	1 cut(s)	250
BtsIMutI	CAGTG	2 cut(s)	175, 434
Cac8I	GCNNGC	1 cut(s)	403
Cfr13I	GGNCC	1 cut(s)	370
ClaI	ATCGAT	1 cut(s)	250
Csp6I	GTAC	1 cut(s)	408
CviQI	GTAC	1 cut(s)	408
DdeI	CTNAG	4 cut(s)	46, 264, 279, 456
DpnI	GATC	3 cut(s)	243, 249, 253
DpnII	GATC	3 cut(s)	241, 247, 251
EciI	GGCGGA	1 cut(s)	125
Eco47I	GGWCC	1 cut(s)	370
Eco88I	CYCGRG	1 cut(s)	395
EcoRII	CCWGG	1 cut(s)	366
FaiI	YATR	2 cut(s)	155, 380
FaqI	GGGAC	1 cut(s)	376
FspBI	CTAG	1 cut(s)	297
GsaI	CCCAGC	1 cut(s)	444
HaeIII	GGCC	1 cut(s)	401
HapII	CCGG	1 cut(s)	162
HinfI	GANTC	2 cut(s)	38, 293
HpaII	CCGG	1 cut(s)	162
HphI	GGTGA	2 cut(s)	151, 343
Hpy188I	TCNGA	2 cut(s)	256, 304
Hpy188III	TCNNGA	1 cut(s)	245
HpyAV	CCTTC	1 cut(s)	72
HpyCH4III	ACNGT	3 cut(s)	13, 179, 412
HpyCH4V	TGCA	1 cut(s)	27
HpyF3I	CTNAG	4 cut(s)	46, 264, 279, 456
Kzo9I	GATC	3 cut(s)	241, 247, 251
LmnI	GCTCC	4 cut(s)	176, 288, 305, 367
LpnPI	CCDG	9 cut(s)	55, 175, 258, 275, 353, 380, 415, 440, 454
MaeI	CTAG	1 cut(s)	297
MaeIII	GTNAC	3 cut(s)	49, 157, 316
MalI	GATC	3 cut(s)	243, 249, 253
MboI	GATC	3 cut(s)	241, 247, 251
MboII	GAAGA	2 cut(s)	57, 72
MfeI	CAATTG	1 cut(s)	332
MflI	RGATCY	1 cut(s)	241
MluCI	AATT	2 cut(s)	257, 332
MlyI	GAGTC	1 cut(s)	32
MmeI	TCCRAC	1 cut(s)	327
MnlI	CCTC	6 cut(s)	32, 64, 232, 320, 338, 391
MseI	TTAA	3 cut(s)	375, 423, 435
MspCI	CTTAAG	1 cut(s)	434
MspI	CCGG	1 cut(s)	162
MspR9I	CCNGG	1 cut(s)	368
MunI	CAATTG	1 cut(s)	332
MvaI	CCWGG	1 cut(s)	368
NdeII	GATC	3 cut(s)	241, 247, 251
NmuCI	GTSAC	1 cut(s)	157
PfeI	GAWTC	1 cut(s)	293
Pfl23II	CGTACG	1 cut(s)	407
PleI	GAGTC	1 cut(s)	32
PpsI	GAGTC	1 cut(s)	32
Psp6I	CCWGG	1 cut(s)	366
PspFI	CCCAGC	1 cut(s)	440
PspGI	CCWGG	1 cut(s)	366
PspLI	CGTACG	1 cut(s)	407
PspPI	GGNCC	1 cut(s)	370
PsuI	RGATCY	1 cut(s)	241
RsaI	GTAC	1 cut(s)	409
RsaNI	GTAC	1 cut(s)	408
SaqAI	TTAA	3 cut(s)	375, 423, 435
Sau3AI	GATC	3 cut(s)	241, 247, 251
Sau96I	GGNCC	1 cut(s)	370
SchI	GAGTC	1 cut(s)	32
ScrFI	CCNGG	1 cut(s)	368
SfcI	CTRYAG	1 cut(s)	287
SinI	GGWCC	1 cut(s)	370
SmlI	CTYRAG	1 cut(s)	434
SmoI	CTYRAG	1 cut(s)	434
Sse9I	AATT	2 cut(s)	257, 332
SsiI	CCGC	1 cut(s)	136
SspMI	CTAG	1 cut(s)	297
StyD4I	CCNGG	1 cut(s)	366
TaaI	ACNGT	3 cut(s)	13, 179, 412
TaqI	TCGA	1 cut(s)	250
TasI	AATT	2 cut(s)	257, 332
TfiI	GAWTC	1 cut(s)	293
Tru1I	TTAA	3 cut(s)	375, 423, 435
Tru9I	TTAA	3 cut(s)	375, 423, 435
TscAI	CASTG	2 cut(s)	182, 434
TseFI	GTSAC	1 cut(s)	157
Tsp45I	GTSAC	1 cut(s)	157
TspDTI	ATGAA	2 cut(s)	17, 57
TspGWI	ACGGA	1 cut(s)	304
TspRI	CASTG	2 cut(s)	182, 434
Vha464I	CTTAAG	1 cut(s)	434
VpaK11BI	GGWCC	1 cut(s)	370
XcmI	CCANNNNNNNNNTGG	1 cut(s)	448
XspI	CTAG	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.