pycom16g19160
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0009928
Physical Location & Seq
Forward (+)
16173511 .. 16174524
1014 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 783 bp
ATGTATTTGGGGATGATGGCAGGTCAACATATGGGTTGGGGTTTAATAGAAGAGGAGGGTTGGAGAAAGGGTCCTTGGACTGCTGAGGAAGATAGGTTGCTTATTGAGTATGTGAGGGTTCATGGTGAAGGCAGATGGAACTCCGTGGCCAGACTTGCAGGACTGAAAAGGAATGGAAAGAGCTGCAGGCTGAGGTGGGTAAATTATTTGAGGCCAGACCTTAAGAGGGGGCAAATTACTCCACATGAAGAGAGAATAATAGTAGACCTACATGCAAGATGGGGGAATAGATGGTCAACTATTGCAAGGAGTTTGCCTGGAAGGACTGATAATGAGATCAAGAACTATTGGAGGACCCATTTTAAGAAAAAAGCGGTTAAAGGGGTTTCTGATGCCTCCGAGAAGGTGAAAACTCGCCTTTTAAGGAGGCAACAGTTTTACCAGCAGCAGCAACTCAATCAAGCAGATCTGAAGAAAATCATGGCCTTACTGGATGAAAATGACAACAATAAAATACCATCCTGCTGGCCTCAAGTGAAGCCGGATTCGGAGACTTCTACTACTACTGTATGCCCTCACGCAGCTGATCAGGAGCAAGGATTCTTCAGCTCCATGCTGCATGAGAATGTGTATGTGCCTGAACCTGCCTCCACTAATGAGGAAAATTTTCTGTGGGATGGTTTGTGGAACTTGGATGATATCCATGGTAATTTTAACACAACTTCAGCTTGTGCAACAGGAAAAACTAGTTTGCACAGCAACTTGGTGGTTCCCCTTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

261

Amino Acids

30.0

Weight (kDa)

8.76

Isoelectric Point (pI)

51.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 23 - 70 5.5e-18 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 26 - 84 3.2e-13 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 76 - 120 6.6e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 80 - 125 3.4e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 11, 652
AccI GTMKAC 1 cut(s) 264
AciI CCGC 1 cut(s) 374
AcoI YGGCCR 1 cut(s) 147
AcsI RAATTY 1 cut(s) 664
AcuI CTGAAG 3 cut(s) 491, 589, 708
AfiI CCNNNNNNNGG 1 cut(s) 226
AflII CTTAAG 1 cut(s) 221
AhlI ACTAGT 1 cut(s) 746
AjnI CCWGG 1 cut(s) 316
AjuI GAANNNNNNNTTGG 2 cut(s) 58, 90
AluBI AGCT 4 cut(s) 183, 584, 609, 728
AluI AGCT 4 cut(s) 183, 584, 609, 728
Alw26I GTCTC 1 cut(s) 545
AoxI GGCC 4 cut(s) 147, 212, 483, 527
ApeKI GCWGC 5 cut(s) 183, 445, 448, 581, 616
ApoI RAATTY 1 cut(s) 664
Asp700I GAANNNNTTC 1 cut(s) 666
AspS9I GGNCC 2 cut(s) 71, 354
AsuHPI GGTGA 2 cut(s) 137, 418
AvaII GGWCC 2 cut(s) 71, 354
BalI TGGCCA 1 cut(s) 149
BbvCI CCTCAGC 2 cut(s) 84, 191
BbvI GCAGC 5 cut(s) 170, 457, 460, 593, 603
BccI CCATC 6 cut(s) 10, 129, 273, 285, 526, 671
BciT130I CCWGG 1 cut(s) 318
BclI TGATCA 1 cut(s) 586
BcoDI GTCTC 1 cut(s) 545
BcuI ACTAGT 1 cut(s) 746
BfaI CTAG 1 cut(s) 747
BfmI CTRYAG 1 cut(s) 184
BfrI CTTAAG 1 cut(s) 221
BfuAI ACCTGC 2 cut(s) 11, 652
BglII AGATCT 1 cut(s) 466
BisI GCNGC 5 cut(s) 184, 446, 449, 582, 617
BlsI GCNGC 5 cut(s) 185, 447, 450, 583, 618
Bme1390I CCNGG 1 cut(s) 318
Bme18I GGWCC 2 cut(s) 71, 354
BmgT120I GGNCC 2 cut(s) 71, 354
BmiI GGNNCC 3 cut(s) 72, 356, 771
BmrFI CCNGG 1 cut(s) 318
BmsI GCATC 1 cut(s) 382
Bpu10I CCTNAGC 2 cut(s) 84, 191
BpuEI CTTGAG 1 cut(s) 516
BsaJI CCNNGG 3 cut(s) 74, 144, 703
BsaXI ACNNNNNCTCC 2 cut(s) 55, 85
Bsc4I CCNNNNNNNGG 1 cut(s) 226
Bse1I ACTGG 1 cut(s) 495
BseBI CCWGG 1 cut(s) 318
BseDI CCNNGG 3 cut(s) 74, 144, 703
BseGI GGATG 5 cut(s) 18, 499, 518, 682, 700
BseLI CCNNNNNNNGG 1 cut(s) 226
BseMII CTCAG 2 cut(s) 75, 182
BseNI ACTGG 1 cut(s) 495
BseRI GAGGAG 1 cut(s) 68
BseXI GCAGC 5 cut(s) 170, 457, 460, 593, 603
BshFI GGCC 4 cut(s) 149, 214, 485, 529
BsiSI CCGG 1 cut(s) 542
BslI CCNNNNNNNGG 1 cut(s) 226
BsmAI GTCTC 1 cut(s) 545
BsnI GGCC 4 cut(s) 149, 214, 485, 529
Bsp143I GATC 3 cut(s) 336, 466, 586
Bsp19I CCATGG 1 cut(s) 703
BspACI CCGC 1 cut(s) 374
BspANI GGCC 4 cut(s) 149, 214, 485, 529
BspCNI CTCAG 2 cut(s) 76, 183
BspLI GGNNCC 3 cut(s) 72, 356, 771
BspMAI CTGCAG 1 cut(s) 188
BspMI ACCTGC 2 cut(s) 11, 652
BspTI CTTAAG 1 cut(s) 221
BsrI ACTGG 1 cut(s) 495
BssECI CCNNGG 3 cut(s) 74, 144, 703
BssMI GATC 3 cut(s) 336, 466, 586
BssT1I CCWWGG 2 cut(s) 74, 703
Bst2UI CCWGG 1 cut(s) 318
Bst4CI ACNGT 2 cut(s) 435, 568
Bst6I CTCTTC 2 cut(s) 45, 243
BstAFI CTTAAG 1 cut(s) 221
BstC8I GCNNGC 2 cut(s) 188, 527
BstDEI CTNAG 2 cut(s) 84, 191
BstDSI CCRYGG 2 cut(s) 144, 703
BstF5I GGATG 5 cut(s) 18, 499, 518, 682, 700
BstKTI GATC 3 cut(s) 339, 469, 589
BstMAI GTCTC 1 cut(s) 545
BstMBI GATC 3 cut(s) 336, 466, 586
BstMWI GCNNNNNNNGC 1 cut(s) 155
BstNI CCWGG 1 cut(s) 318
BstNSI RCATGY 1 cut(s) 275
BstSCI CCNGG 1 cut(s) 316
BstSFI CTRYAG 1 cut(s) 184
BstV1I GCAGC 5 cut(s) 170, 457, 460, 593, 603
BstX2I RGATCY 1 cut(s) 466
BstXI CCANNNNNNTGG 1 cut(s) 525
BstYI RGATCY 1 cut(s) 466
BsuRI GGCC 4 cut(s) 149, 214, 485, 529
BtgI CCRYGG 2 cut(s) 144, 703
BtsCI GGATG 5 cut(s) 18, 499, 518, 682, 700
BveI ACCTGC 2 cut(s) 11, 652
Cac8I GCNNGC 2 cut(s) 188, 527
Cfr13I GGNCC 2 cut(s) 71, 354
CviAII CATG 7 cut(s) 122, 245, 272, 481, 613, 620, 704
DdeI CTNAG 2 cut(s) 84, 191
DpnI GATC 3 cut(s) 338, 468, 588
DpnII GATC 3 cut(s) 336, 466, 586
EaeI YGGCCR 1 cut(s) 147
Eam1104I CTCTTC 2 cut(s) 45, 243
EarI CTCTTC 2 cut(s) 45, 243
Eco130I CCWWGG 2 cut(s) 74, 703
Eco32I GATATC 1 cut(s) 700
Eco47I GGWCC 2 cut(s) 71, 354
Eco57I CTGAAG 3 cut(s) 491, 589, 708
EcoO109I RGGNCCY 2 cut(s) 71, 354
EcoRII CCWGG 1 cut(s) 316
EcoRV GATATC 1 cut(s) 700
EcoT14I CCWWGG 2 cut(s) 74, 703
ErhI CCWWGG 2 cut(s) 74, 703
FaeI CATG 7 cut(s) 125, 248, 275, 484, 616, 623, 707
FatI CATG 7 cut(s) 121, 244, 271, 480, 612, 619, 703
FauNDI CATATG 1 cut(s) 30
FbaI TGATCA 1 cut(s) 586
FblI GTMKAC 1 cut(s) 264
Fnu4HI GCNGC 5 cut(s) 184, 446, 449, 582, 617
FokI GGATG 5 cut(s) 25, 505, 506, 689, 707
Fsp4HI GCNGC 5 cut(s) 184, 446, 449, 582, 617
FspBI CTAG 1 cut(s) 747
GluI GCNGC 5 cut(s) 184, 446, 449, 582, 617
HaeIII GGCC 4 cut(s) 149, 214, 485, 529
HapII CCGG 1 cut(s) 542
Hin1II CATG 7 cut(s) 125, 248, 275, 484, 616, 623, 707
HincII GTYRAC 2 cut(s) 26, 297
HindII GTYRAC 2 cut(s) 26, 297
HinfI GANTC 2 cut(s) 545, 600
HpaII CCGG 1 cut(s) 542
HphI GGTGA 2 cut(s) 137, 418
Hpy166II GTNNAC 3 cut(s) 26, 265, 297
Hpy188I TCNGA 4 cut(s) 391, 400, 471, 550
Hpy188III TCNNGA 2 cut(s) 340, 590
Hpy8I GTNNAC 3 cut(s) 26, 265, 297
HpyAV CCTTC 3 cut(s) 122, 315, 397
HpyCH4III ACNGT 2 cut(s) 435, 568
HpyCH4V TGCA 7 cut(s) 158, 186, 275, 305, 619, 734, 754
HpyF10VI GCNNNNNNNGC 1 cut(s) 155
HpyF3I CTNAG 2 cut(s) 84, 191
Hsp92II CATG 7 cut(s) 125, 248, 275, 484, 616, 623, 707
Ksp22I TGATCA 1 cut(s) 586
Kzo9I GATC 3 cut(s) 336, 466, 586
LmnI GCTCC 2 cut(s) 592, 614
Lsp1109I GCAGC 5 cut(s) 170, 457, 460, 593, 603
LweI GCATC 1 cut(s) 382
MaeI CTAG 1 cut(s) 747
MalI GATC 3 cut(s) 338, 468, 588
MboI GATC 3 cut(s) 336, 466, 586
MboII GAAGA 5 cut(s) 62, 101, 260, 484, 595
MflI RGATCY 1 cut(s) 466
MlsI TGGCCA 1 cut(s) 149
MluCI AATT 4 cut(s) 202, 234, 664, 709
MluNI TGGCCA 1 cut(s) 149
MmeI TCCRAC 1 cut(s) 41
Mox20I TGGCCA 1 cut(s) 149
MroXI GAANNNNTTC 1 cut(s) 666
MscI TGGCCA 1 cut(s) 149
MseI TTAA 6 cut(s) 44, 222, 363, 378, 422, 714
MslI CAYNNNNRTG 1 cut(s) 624
Msp20I TGGCCA 1 cut(s) 149
MspA1I CMGCKG 1 cut(s) 584
MspCI CTTAAG 1 cut(s) 221
MspI CCGG 1 cut(s) 542
MspR9I CCNGG 1 cut(s) 318
MvaI CCWGG 1 cut(s) 318
MwoI GCNNNNNNNGC 1 cut(s) 155
NcoI CCATGG 1 cut(s) 703
NdeI CATATG 1 cut(s) 30
NdeII GATC 3 cut(s) 336, 466, 586
NlaIII CATG 7 cut(s) 125, 248, 275, 484, 616, 623, 707
NlaIV GGNNCC 3 cut(s) 72, 356, 771
NspI RCATGY 1 cut(s) 275
PdmI GAANNNNTTC 1 cut(s) 666
PfeI GAWTC 2 cut(s) 545, 600
PkrI GCNGC 5 cut(s) 185, 447, 450, 583, 618
PpuMI RGGWCCY 2 cut(s) 71, 354
Psp5II RGGWCCY 2 cut(s) 71, 354
Psp6I CCWGG 1 cut(s) 316
PspGI CCWGG 1 cut(s) 316
PspN4I GGNNCC 3 cut(s) 72, 356, 771
PspPI GGNCC 2 cut(s) 71, 354
PspPPI RGGWCCY 2 cut(s) 71, 354
PstI CTGCAG 1 cut(s) 188
PsuI RGATCY 1 cut(s) 466
PvuII CAGCTG 1 cut(s) 584
RseI CAYNNNNRTG 1 cut(s) 624
SaqAI TTAA 6 cut(s) 44, 222, 363, 378, 422, 714
SatI GCNGC 5 cut(s) 184, 446, 449, 582, 617
Sau3AI GATC 3 cut(s) 336, 466, 586
Sau96I GGNCC 2 cut(s) 71, 354
ScrFI CCNGG 1 cut(s) 318
SfaNI GCATC 1 cut(s) 382
SfcI CTRYAG 1 cut(s) 184
SinI GGWCC 2 cut(s) 71, 354
SmiMI CAYNNNNRTG 1 cut(s) 624
SmlI CTYRAG 2 cut(s) 221, 531
SmoI CTYRAG 2 cut(s) 221, 531
SpeI ACTAGT 1 cut(s) 746
Sse9I AATT 4 cut(s) 202, 234, 664, 709
SsiI CCGC 1 cut(s) 374
SspMI CTAG 1 cut(s) 747
StyD4I CCNGG 1 cut(s) 316
StyI CCWWGG 2 cut(s) 74, 703
TaaI ACNGT 2 cut(s) 435, 568
TasI AATT 4 cut(s) 202, 234, 664, 709
TfiI GAWTC 2 cut(s) 545, 600
Tru1I TTAA 6 cut(s) 44, 222, 363, 378, 422, 714
Tru9I TTAA 6 cut(s) 44, 222, 363, 378, 422, 714
TseI GCWGC 5 cut(s) 183, 445, 448, 581, 616
TspDTI ATGAA 3 cut(s) 110, 261, 510
TspGWI ACGGA 1 cut(s) 133
Vha464I CTTAAG 1 cut(s) 221
VpaK11BI GGWCC 2 cut(s) 71, 354
XapI RAATTY 1 cut(s) 664
XceI RCATGY 1 cut(s) 275
XmiI GTMKAC 1 cut(s) 264
XmnI GAANNNNTTC 1 cut(s) 666
XspI CTAG 1 cut(s) 747
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.