pycom16g20680

SRP40, C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0008781
Physical Location & Seq
Reverse (-)
18548252 .. 18551527
3276 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1260 bp
ATGCCCAAATCCCTAACAAGCACGCAGGAGGACGCTATCAACCCTACCCTTCTCGCATTCAAGCCTCGCCAAGTTCTGCTCGCAAACCGAGACATGGAGCACAGGAAGCCTAATAGCTCTGCCGACGGAGCACAAACTCTGAGTTCCGACCAGAAGGGTCCACTCCTCCGCGCCGTGGCTCGGTTCCTGGAAAACAATGGATTCTCCAAAACCTTGAAAAAGTTCCTTTCTGAAGCTGGAATCGAGAAAAGTGAACTGAAGGATTTGCCACTGGATTTGGGAGAAATTTACTGCAAGTATTCTGAGATGTGTAGTGGAGACACAAATGTCCACAGCGAGGAGAAAGTATTTAAGGATACCTTCCAATTGCTGGTAATGGCGGATAAGTTATCCAAGGAGGCAAGGAAGTCCAAGATAGCTTCTGGTTCTCTTGCTGGTGCAGCAGAAGAACATCAATCAGAGCAGTTTCTTGGTGCAACTGAAAAAAAAATTAAAGATGCTGTACTTTTAAAGGAAAATGGTGTTGGTGATTCTGAGATAGAAAAGAAACCAAAGGTTAAGAAGAAAAAGAAGAACAAGTCAAGTACCGATTCTTTCAGTGCTGGTGTAGAGCAGCATGGCTTGGAAGGAAAAAATGATGCAATTGAAATTGGTAAATCAGTTGCTGATGACAATCCAATGGATGGGAAGAGTGTCAAACCTAAAAGTAAGAAGAAAAAGAAAGATGGTTTGGTTTCTGAAAGTTTAGGTGGTGAGAAGGGGAAGGCGCTTAGTATAGGAGATAGGAATGGAACTAGTTCTGGAAAATATGATTTCAAGATATCAGATGTGGATACTACTGATAAGGAGAATAAAGGTTCCAAAAAAAGAAAAAGATTAACTTCTGAAGGAAATGATTCACAGCCTGCCGACAACAAAGAAGATGAAGAATCTAAGCGCAGAAAGGTAGAGAGCTCAAAATCATCCAAGGGAAGTGAGCAACCAGTAAATAACAATGCATCACAAGGAAAAGCTGAAAATTTTGGTGAACTAGATAAAAGTGCTGAGAAGTCTTCTATTAAAAAAAACAAGAAGCAACACAATGGTTCAGCTGAGCCAAAGACTGTTAATGCATTTCAAAGGGTAAAAGCCGATGAGGTGGAATTTGTTGATGAGAAGCTTCGAGATAATTCTTACTGGGCAAAGGATGGTGCGGAGATTGGCTATGGTGCAAAAGCACAAGAGATTCTTGGGCAAGTCAGAGGAAGGTGTGTATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SRP40_C

Protein Analysis

420

Amino Acids

45.81

Weight (kDa)

9.1

Isoelectric Point (pI)

29.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRP40_C PF05022 372 - 416 7.2e-10 SRP40, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 326
AccB7I CCANNNNNTGG 2 cut(s) 370, 683
AccII CGCG 1 cut(s) 171
AciI CCGC 3 cut(s) 169, 380, 1193
AcsI RAATTY 3 cut(s) 285, 1018, 1142
AcuI CTGAAG 3 cut(s) 252, 278, 906
AfaI GTAC 2 cut(s) 504, 586
AfiI CCNNNNNNNGG 6 cut(s) 94, 175, 180, 337, 370, 683
AgsI TTSAA 5 cut(s) 61, 217, 647, 817, 1118
AhlI ACTAGT 1 cut(s) 794
AjnI CCWGG 1 cut(s) 186
AjuI GAANNNNNNNTTGG 4 cut(s) 507, 539, 713, 745
AluBI AGCT 7 cut(s) 117, 236, 419, 954, 1013, 1091, 1159
AluI AGCT 7 cut(s) 117, 236, 419, 954, 1013, 1091, 1159
Alw21I GWGCWC 3 cut(s) 102, 133, 956
Alw26I GTCTC 2 cut(s) 84, 312
AlwNI CAGNNNCTG 1 cut(s) 665
ApeKI GCWGC 2 cut(s) 440, 613
ApoI RAATTY 3 cut(s) 285, 1018, 1142
Asp700I GAANNNNTTC 3 cut(s) 221, 796, 895
AspLEI GCGC 3 cut(s) 173, 769, 939
AspS9I GGNCC 1 cut(s) 158
AsuHPI GGTGA 3 cut(s) 539, 764, 1037
AvaII GGWCC 1 cut(s) 158
BanII GRGCYC 1 cut(s) 956
BbsI GAAGAC 1 cut(s) 1044
Bbv12I GWGCWC 3 cut(s) 102, 133, 956
BbvI GCAGC 2 cut(s) 452, 625
BccI CCATC 3 cut(s) 677, 719, 1181
BceAI ACGGC 1 cut(s) 158
BciT130I CCWGG 1 cut(s) 188
BciVI GTATCC 2 cut(s) 349, 826
BcoDI GTCTC 2 cut(s) 84, 312
BcuI ACTAGT 1 cut(s) 794
BfaI CTAG 2 cut(s) 795, 1031
BfoI RGCGCY 1 cut(s) 770
BfuI GTATCC 2 cut(s) 349, 826
BisI GCNGC 2 cut(s) 441, 614
BlpI GCTNAGC 1 cut(s) 1092
BlsI GCNGC 2 cut(s) 442, 615
Bme1390I CCNGG 1 cut(s) 188
Bme18I GGWCC 1 cut(s) 158
BmgT120I GGNCC 1 cut(s) 158
BmiI GGNNCC 3 cut(s) 159, 185, 859
BmrFI CCNGG 1 cut(s) 188
BmrI ACTGGG 1 cut(s) 1186
BmsI GCATC 3 cut(s) 487, 628, 1007
BmuI ACTGGG 1 cut(s) 1186
BpiI GAAGAC 1 cut(s) 1044
Bpu1102I GCTNAGC 1 cut(s) 1092
BsaBI GATNNNNATC 1 cut(s) 672
BsaJI CCNNGG 3 cut(s) 174, 393, 966
Bsc4I CCNNNNNNNGG 6 cut(s) 94, 175, 180, 337, 370, 683
Bse1I ACTGG 3 cut(s) 276, 983, 1181
Bse8I GATNNNNATC 1 cut(s) 672
BseBI CCWGG 1 cut(s) 188
BseDI CCNNGG 3 cut(s) 174, 393, 966
BseGI GGATG 3 cut(s) 688, 962, 1192
BseJI GATNNNNATC 1 cut(s) 672
BseLI CCNNNNNNNGG 6 cut(s) 94, 175, 180, 337, 370, 683
BseMII CTCAG 5 cut(s) 131, 294, 525, 1035, 1083
BseNI ACTGG 3 cut(s) 276, 983, 1181
BseRI GAGGAG 2 cut(s) 155, 353
BseXI GCAGC 2 cut(s) 452, 625
BsgI GTGCAG 1 cut(s) 459
Bsh1236I CGCG 1 cut(s) 171
BsiHKAI GWGCWC 3 cut(s) 102, 133, 956
BslI CCNNNNNNNGG 6 cut(s) 94, 175, 180, 337, 370, 683
BsmAI GTCTC 2 cut(s) 84, 312
BsmI GAATGC 1 cut(s) 56
Bsp1286I GDGCHC 3 cut(s) 102, 133, 956
Bsp1720I GCTNAGC 1 cut(s) 1092
BspACI CCGC 3 cut(s) 169, 380, 1193
BspCNI CTCAG 5 cut(s) 132, 295, 526, 1036, 1084
BspFNI CGCG 1 cut(s) 171
BspLI GGNNCC 3 cut(s) 159, 185, 859
BsrI ACTGG 3 cut(s) 276, 983, 1181
BssECI CCNNGG 3 cut(s) 174, 393, 966
BssT1I CCWWGG 2 cut(s) 393, 966
Bst2UI CCWGG 1 cut(s) 188
Bst4CI ACNGT 1 cut(s) 1105
Bst6I CTCTTC 1 cut(s) 683
BstC8I GCNNGC 3 cut(s) 23, 81, 906
BstDEI CTNAG 7 cut(s) 140, 303, 534, 770, 933, 1044, 1092
BstDSI CCRYGG 1 cut(s) 174
BstF5I GGATG 3 cut(s) 688, 962, 1192
BstFNI CGCG 1 cut(s) 171
BstH2I RGCGCY 1 cut(s) 770
BstHHI GCGC 3 cut(s) 173, 769, 939
BstMAI GTCTC 2 cut(s) 84, 312
BstMWI GCNNNNNNNGC 3 cut(s) 106, 128, 440
BstNI CCWGG 1 cut(s) 188
BstSCI CCNGG 1 cut(s) 186
BstUI CGCG 1 cut(s) 171
BstV1I GCAGC 2 cut(s) 452, 625
BstV2I GAAGAC 1 cut(s) 1044
BsuI GTATCC 2 cut(s) 349, 826
BtgI CCRYGG 1 cut(s) 174
BtsCI GGATG 3 cut(s) 688, 962, 1192
BtsIMutI CAGTG 2 cut(s) 269, 604
Cac8I GCNNGC 3 cut(s) 23, 81, 906
CaiI CAGNNNCTG 1 cut(s) 665
CfoI GCGC 3 cut(s) 173, 769, 939
Cfr13I GGNCC 1 cut(s) 158
CseI GACGC 1 cut(s) 41
Csp6I GTAC 2 cut(s) 503, 585
CspCI CAANNNNNGTGG 2 cut(s) 258, 293
CviAII CATG 2 cut(s) 94, 617
CviQI GTAC 2 cut(s) 503, 585
DdeI CTNAG 7 cut(s) 140, 303, 534, 770, 933, 1044, 1092
DraI TTTAAA 1 cut(s) 510
DrdI GACNNNNNNGTC 1 cut(s) 326
DseDI GACNNNNNNGTC 1 cut(s) 326
Eam1104I CTCTTC 1 cut(s) 683
EarI CTCTTC 1 cut(s) 683
EciI GGCGGA 1 cut(s) 395
Ecl136II GAGCTC 1 cut(s) 954
Eco130I CCWWGG 2 cut(s) 393, 966
Eco24I GRGCYC 1 cut(s) 956
Eco32I GATATC 1 cut(s) 822
Eco47I GGWCC 1 cut(s) 158
Eco53kI GAGCTC 1 cut(s) 954
Eco57I CTGAAG 3 cut(s) 252, 278, 906
EcoICRI GAGCTC 1 cut(s) 954
EcoRII CCWGG 1 cut(s) 186
EcoRV GATATC 1 cut(s) 822
EcoT14I CCWWGG 2 cut(s) 393, 966
EcoT22I ATGCAT 2 cut(s) 1000, 1114
EcoT38I GRGCYC 1 cut(s) 956
ErhI CCWWGG 2 cut(s) 393, 966
FaeI CATG 2 cut(s) 97, 620
FaiI YATR 6 cut(s) 95, 618, 776, 810, 1206, 1255
FalI AAGNNNNNCTT 6 cut(s) 344, 376, 865, 897, 1212, 1244
FatI CATG 2 cut(s) 93, 616
Fnu4HI GCNGC 2 cut(s) 441, 614
FokI GGATG 3 cut(s) 695, 949, 1199
FriOI GRGCYC 1 cut(s) 956
Fsp4HI GCNGC 2 cut(s) 441, 614
FspBI CTAG 2 cut(s) 795, 1031
GlaI GCGC 3 cut(s) 172, 768, 938
GluI GCNGC 2 cut(s) 441, 614
HaeII RGCGCY 1 cut(s) 770
HgaI GACGC 1 cut(s) 41
HhaI GCGC 3 cut(s) 173, 769, 939
Hin1II CATG 2 cut(s) 97, 620
Hin6I GCGC 3 cut(s) 171, 767, 937
HinP1I GCGC 3 cut(s) 171, 767, 937
HindIII AAGCTT 1 cut(s) 1157
HinfI GANTC 7 cut(s) 201, 240, 530, 590, 896, 929, 1225
HphI GGTGA 3 cut(s) 539, 764, 1037
Hpy166II GTNNAC 4 cut(s) 161, 254, 331, 1028
Hpy188III TCNNGA 4 cut(s) 244, 801, 817, 1163
Hpy8I GTNNAC 4 cut(s) 161, 254, 331, 1028
Hpy99I CGWCG 1 cut(s) 128
HpyAV CCTTC 9 cut(s) 59, 148, 253, 370, 620, 751, 757, 881, 1239
HpyCH4III ACNGT 1 cut(s) 1105
HpyCH4V TGCA 7 cut(s) 294, 440, 476, 641, 998, 1112, 1211
HpyF10VI GCNNNNNNNGC 3 cut(s) 106, 128, 440
HpyF3I CTNAG 7 cut(s) 140, 303, 534, 770, 933, 1044, 1092
Hsp92II CATG 2 cut(s) 97, 620
HspAI GCGC 3 cut(s) 171, 767, 937
LmnI GCTCC 2 cut(s) 97, 128
Lsp1109I GCAGC 2 cut(s) 452, 625
LweI GCATC 3 cut(s) 487, 628, 1007
MaeI CTAG 2 cut(s) 795, 1031
MboII GAAGA 8 cut(s) 458, 574, 583, 700, 724, 932, 938, 1044
MfeI CAATTG 2 cut(s) 365, 642
MhlI GDGCHC 3 cut(s) 102, 133, 956
MluCI AATT 8 cut(s) 285, 365, 489, 642, 648, 1018, 1142, 1168
MmeI TCCRAC 1 cut(s) 171
MnlI CCTC 7 cut(s) 22, 75, 176, 331, 391, 1129, 1235
Mph1103I ATGCAT 2 cut(s) 1000, 1114
MroXI GAANNNNTTC 3 cut(s) 221, 796, 895
MseI TTAA 7 cut(s) 351, 492, 509, 558, 878, 1059, 1107
MspA1I CMGCKG 1 cut(s) 1091
MspR9I CCNGG 1 cut(s) 188
MunI CAATTG 2 cut(s) 365, 642
Mva1269I GAATGC 1 cut(s) 56
MvaI CCWGG 1 cut(s) 188
MvnI CGCG 1 cut(s) 171
MwoI GCNNNNNNNGC 3 cut(s) 106, 128, 440
NlaIII CATG 2 cut(s) 97, 620
NlaIV GGNNCC 3 cut(s) 159, 185, 859
NsiI ATGCAT 2 cut(s) 1000, 1114
PctI GAATGC 1 cut(s) 56
PdmI GAANNNNTTC 3 cut(s) 221, 796, 895
PfeI GAWTC 7 cut(s) 201, 240, 530, 590, 896, 929, 1225
PflMI CCANNNNNTGG 2 cut(s) 370, 683
PfoI TCCNGGA 1 cut(s) 186
PkrI GCNGC 2 cut(s) 442, 615
Psp124BI GAGCTC 1 cut(s) 956
Psp6I CCWGG 1 cut(s) 186
PspGI CCWGG 1 cut(s) 186
PspN4I GGNNCC 3 cut(s) 159, 185, 859
PspPI GGNCC 1 cut(s) 158
PstNI CAGNNNCTG 1 cut(s) 665
PvuII CAGCTG 1 cut(s) 1091
RsaI GTAC 2 cut(s) 504, 586
RsaNI GTAC 2 cut(s) 503, 585
SacI GAGCTC 1 cut(s) 956
SaqAI TTAA 7 cut(s) 351, 492, 509, 558, 878, 1059, 1107
SatI GCNGC 2 cut(s) 441, 614
Sau96I GGNCC 1 cut(s) 158
ScrFI CCNGG 1 cut(s) 188
SduI GDGCHC 3 cut(s) 102, 133, 956
SfaNI GCATC 3 cut(s) 487, 628, 1007
SinI GGWCC 1 cut(s) 158
SpeI ACTAGT 1 cut(s) 794
Sse9I AATT 8 cut(s) 285, 365, 489, 642, 648, 1018, 1142, 1168
SsiI CCGC 3 cut(s) 169, 380, 1193
SspMI CTAG 2 cut(s) 795, 1031
SstI GAGCTC 1 cut(s) 956
StyD4I CCNGG 1 cut(s) 186
StyI CCWWGG 2 cut(s) 393, 966
TaaI ACNGT 1 cut(s) 1105
TaqI TCGA 2 cut(s) 243, 1162
TasI AATT 8 cut(s) 285, 365, 489, 642, 648, 1018, 1142, 1168
TatI WGTACW 1 cut(s) 502
TfiI GAWTC 7 cut(s) 201, 240, 530, 590, 896, 929, 1225
Tru1I TTAA 7 cut(s) 351, 492, 509, 558, 878, 1059, 1107
Tru9I TTAA 7 cut(s) 351, 492, 509, 558, 878, 1059, 1107
TscAI CASTG 2 cut(s) 276, 604
TseI GCWGC 2 cut(s) 440, 613
TspDTI ATGAA 1 cut(s) 939
TspGWI ACGGA 1 cut(s) 141
TspRI CASTG 2 cut(s) 276, 604
Van91I CCANNNNNTGG 2 cut(s) 370, 683
VpaK11BI GGWCC 1 cut(s) 158
XapI RAATTY 3 cut(s) 285, 1018, 1142
XmnI GAANNNNTTC 3 cut(s) 221, 796, 895
XspI CTAG 2 cut(s) 795, 1031
Zsp2I ATGCAT 2 cut(s) 1000, 1114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.