pycom16g23680

SWI SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD H box

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0006954
Physical Location & Seq
Forward (+)
24842000 .. 24843331
1332 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 780 bp
ATGGGTGCATTTGGCTTTGAATGTGCCTTGGACAAAGTAAATGGGGAACTTAAGAATTATAGGGACTTCTCTATCCATCGGGTATTTTCTCAACTTCTTGAAAATGAATGTCTTTCAAATTTTGATGCATTACTATCAATGTTTTGGAACGATTTGATTATCTGGGGCGTACAGTGTTCGTGTGCCTGTCTTTTGCTGTATTATGGTGTCTCAGATAAGAAAGGATTGCTTCCAGACAAATATGCATTGCTTTCTTCAAAATCTCAGGCATTGGCTGAACTTCTTCCTTCACTGAAGCTAGCTGGGCGTCGTGTTCTGATTTTCAGCCAGTGGACGTCAATGCTTGATATTTTGGAGTGGACTTTGGATGTGATAGGTGTTACATACAGACGACTTGATGGAAGCACTCAGGTGACAGAAAGACAGACGATAGTTGATACACTCAATAATGACACTTCTATATTTGCTTGCTTGCTGTCCACAAGAGTTGGAGGTCAGGGTTTGAACCTGGTTGGAGCTGATACCGTAGTTATTCATGATATGGATTACAACCCGCAAATTTATCCACAGGCAGAAGGTCGTTGTCATCGCATCGGCCAAGTGAAGCCTGTTACTATATACAGGCTAGTCACTAAGGCTACAGTTGATGAAAATGTCTACGAGATTGCGAAAAGGAAGTTAGTGCTAGATGCTGCAGTCCTGGAATCTGGCGTGGAGATGGATAATGAAGGTGACACTTCCACCATGGGAGAGATATTATCGAAACTTTTGCTTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000018 GO:0000228 GO:0000729 GO:0000785 GO:0000792 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006325 GO:0006338 GO:0006355 GO:0006464 GO:0006476 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0008150 GO:0008152 GO:0009117 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010225 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016363 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0019637 GO:0022402 GO:0022607 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0033554 GO:0034399 GO:0034641 GO:0034644 GO:0035601 GO:0035861 GO:0036211 GO:0043044 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043596 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045893 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051259 GO:0051260 GO:0051276 GO:0051304 GO:0051716 GO:0055086 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070932 GO:0070933 GO:0071214 GO:0071478 GO:0071482 GO:0071494 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090734 GO:0097159 GO:0098732 GO:0104004 GO:1901360 GO:1901363 GO:1901564 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04550 map04550
Pfam Domains
Protein Families
Helicase_C SNF2_N

Protein Analysis

260

Amino Acids

28.84

Weight (kDa)

4.96

Isoelectric Point (pI)

25.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Helicase_C PF00271 87 - 199 9.7e-24 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 338
AccI GTMKAC 1 cut(s) 657
AciI CCGC 1 cut(s) 554
AcoI YGGCCR 1 cut(s) 595
AcsI RAATTY 2 cut(s) 118, 558
AcuI CTGAAG 1 cut(s) 314
AcyI GRCGYC 2 cut(s) 307, 335
AfaI GTAC 1 cut(s) 171
AflII CTTAAG 1 cut(s) 50
AgsI TTSAA 5 cut(s) 20, 101, 117, 258, 505
AjnI CCWGG 2 cut(s) 507, 699
AleI CACNNNNGTG 1 cut(s) 410
AluBI AGCT 3 cut(s) 298, 302, 518
AluI AGCT 3 cut(s) 298, 302, 518
Alw26I GTCTC 1 cut(s) 214
AoxI GGCC 1 cut(s) 595
ApeKI GCWGC 1 cut(s) 692
ApoI RAATTY 2 cut(s) 118, 558
Asp700I GAANNNNTTC 1 cut(s) 282
AsuHPI GGTGA 2 cut(s) 424, 743
AsuNHI GCTAGC 1 cut(s) 298
BaeI ACNNNNGTAYC 2 cut(s) 513, 546
BbvI GCAGC 1 cut(s) 679
BccI CCATC 3 cut(s) 84, 392, 712
BcgI CGANNNNNNTGC 1 cut(s) 751
BciT130I CCWGG 2 cut(s) 509, 701
BcoDI GTCTC 1 cut(s) 214
BfaI CTAG 3 cut(s) 299, 626, 686
BfmI CTRYAG 2 cut(s) 639, 693
BfrI CTTAAG 1 cut(s) 50
BisI GCNGC 1 cut(s) 693
BlsI GCNGC 1 cut(s) 694
Bme1390I CCNGG 2 cut(s) 509, 701
BmrFI CCNGG 2 cut(s) 509, 701
BmsI GCATC 3 cut(s) 115, 600, 679
BmtI GCTAGC 1 cut(s) 302
BsaHI GRCGYC 2 cut(s) 307, 335
BsaJI CCNNGG 2 cut(s) 27, 744
Bse1I ACTGG 1 cut(s) 328
Bse3DI GCAATG 1 cut(s) 245
BseBI CCWGG 2 cut(s) 509, 701
BseDI CCNNGG 2 cut(s) 27, 744
BseGI GGATG 1 cut(s) 373
BseMI GCAATG 1 cut(s) 245
BseMII CTCAG 3 cut(s) 225, 278, 422
BseNI ACTGG 1 cut(s) 328
BseXI GCAGC 1 cut(s) 679
BseYI CCCAGC 1 cut(s) 302
BshFI GGCC 1 cut(s) 597
BslFI GGGAC 1 cut(s) 77
BsmAI GTCTC 1 cut(s) 214
BsmFI GGGAC 1 cut(s) 77
BsnI GGCC 1 cut(s) 597
Bsp19I CCATGG 1 cut(s) 744
BspACI CCGC 1 cut(s) 554
BspANI GGCC 1 cut(s) 597
BspCNI CTCAG 3 cut(s) 224, 277, 421
BspHI TCATGA 1 cut(s) 535
BspMAI CTGCAG 1 cut(s) 697
BspOI GCTAGC 1 cut(s) 302
BspTI CTTAAG 1 cut(s) 50
BsrDI GCAATG 1 cut(s) 245
BsrI ACTGG 1 cut(s) 328
BssECI CCNNGG 2 cut(s) 27, 744
BssNI GRCGYC 2 cut(s) 307, 335
BssT1I CCWWGG 2 cut(s) 27, 744
Bst2UI CCWGG 2 cut(s) 509, 701
Bst4CI ACNGT 3 cut(s) 174, 526, 643
BstACI GRCGYC 2 cut(s) 307, 335
BstAFI CTTAAG 1 cut(s) 50
BstC8I GCNNGC 3 cut(s) 300, 469, 473
BstDEI CTNAG 4 cut(s) 211, 264, 408, 633
BstDSI CCRYGG 1 cut(s) 744
BstF5I GGATG 1 cut(s) 373
BstMAI GTCTC 1 cut(s) 214
BstMWI GCNNNNNNNGC 1 cut(s) 304
BstNI CCWGG 2 cut(s) 509, 701
BstSCI CCNGG 2 cut(s) 507, 699
BstSFI CTRYAG 2 cut(s) 639, 693
BstV1I GCAGC 1 cut(s) 679
BsuRI GGCC 1 cut(s) 597
BtgI CCRYGG 1 cut(s) 744
BtgZI GCGATG 1 cut(s) 572
BtsCI GGATG 1 cut(s) 373
BtsIMutI CAGTG 3 cut(s) 179, 290, 335
Cac8I GCNNGC 3 cut(s) 300, 469, 473
CciI TCATGA 1 cut(s) 535
CseI GACGC 1 cut(s) 296
CsiI ACCWGGT 1 cut(s) 507
Csp6I GTAC 1 cut(s) 170
CspCI CAANNNNNGTGG 2 cut(s) 469, 504
CviAII CATG 2 cut(s) 536, 745
CviQI GTAC 1 cut(s) 170
DdeI CTNAG 4 cut(s) 211, 264, 408, 633
EaeI YGGCCR 1 cut(s) 595
Eco130I CCWWGG 2 cut(s) 27, 744
Eco57I CTGAAG 1 cut(s) 314
EcoRII CCWGG 2 cut(s) 507, 699
EcoT14I CCWWGG 2 cut(s) 27, 744
EcoT22I ATGCAT 2 cut(s) 130, 247
ErhI CCWWGG 2 cut(s) 27, 744
FaeI CATG 2 cut(s) 539, 748
FalI AAGNNNNNCTT 2 cut(s) 213, 245
FaqI GGGAC 1 cut(s) 77
FatI CATG 2 cut(s) 535, 744
FauI CCCGC 1 cut(s) 561
FblI GTMKAC 1 cut(s) 657
Fnu4HI GCNGC 1 cut(s) 693
FokI GGATG 1 cut(s) 380
Fsp4HI GCNGC 1 cut(s) 693
FspBI CTAG 3 cut(s) 299, 626, 686
GluI GCNGC 1 cut(s) 693
GsaI CCCAGC 1 cut(s) 306
HaeIII GGCC 1 cut(s) 597
HgaI GACGC 1 cut(s) 296
Hin1I GRCGYC 2 cut(s) 307, 335
Hin1II CATG 2 cut(s) 539, 748
HinfI GANTC 1 cut(s) 704
HphI GGTGA 2 cut(s) 424, 743
Hpy166II GTNNAC 4 cut(s) 333, 360, 480, 658
Hpy188I TCNGA 2 cut(s) 214, 318
Hpy188III TCNNGA 3 cut(s) 98, 233, 536
Hpy8I GTNNAC 4 cut(s) 333, 360, 480, 658
Hpy99I CGWCG 1 cut(s) 312
HpyAV CCTTC 3 cut(s) 297, 569, 722
HpyCH4III ACNGT 3 cut(s) 174, 526, 643
HpyCH4IV ACGT 1 cut(s) 335
HpyCH4V TGCA 4 cut(s) 8, 128, 245, 695
HpyF10VI GCNNNNNNNGC 1 cut(s) 304
HpyF3I CTNAG 4 cut(s) 211, 264, 408, 633
HpySE526I ACGT 1 cut(s) 335
Hsp92I GRCGYC 2 cut(s) 307, 335
Hsp92II CATG 2 cut(s) 539, 748
LmnI GCTCC 1 cut(s) 515
Lsp1109I GCAGC 1 cut(s) 679
LweI GCATC 3 cut(s) 115, 600, 679
MabI ACCWGGT 1 cut(s) 507
MaeI CTAG 3 cut(s) 299, 626, 686
MaeII ACGT 1 cut(s) 335
MaeIII GTNAC 5 cut(s) 379, 412, 610, 628, 731
MboII GAAGA 2 cut(s) 246, 275
MluCI AATT 3 cut(s) 55, 118, 558
MmeI TCCRAC 2 cut(s) 469, 493
MnlI CCTC 1 cut(s) 485
Mph1103I ATGCAT 2 cut(s) 130, 247
MroXI GAANNNNTTC 1 cut(s) 282
MseI TTAA 2 cut(s) 51, 778
MslI CAYNNNNRTG 1 cut(s) 410
MspCI CTTAAG 1 cut(s) 50
MspR9I CCNGG 2 cut(s) 509, 701
MvaI CCWGG 2 cut(s) 509, 701
MwoI GCNNNNNNNGC 1 cut(s) 304
NcoI CCATGG 1 cut(s) 744
NheI GCTAGC 1 cut(s) 298
NlaIII CATG 2 cut(s) 539, 748
NmuCI GTSAC 3 cut(s) 412, 628, 731
NsiI ATGCAT 2 cut(s) 130, 247
OliI CACNNNNGTG 1 cut(s) 410
PagI TCATGA 1 cut(s) 535
PdmI GAANNNNTTC 1 cut(s) 282
PfeI GAWTC 1 cut(s) 704
PfoI TCCNGGA 1 cut(s) 699
PkrI GCNGC 1 cut(s) 694
Psp6I CCWGG 2 cut(s) 507, 699
PspFI CCCAGC 1 cut(s) 302
PspGI CCWGG 2 cut(s) 507, 699
PstI CTGCAG 1 cut(s) 697
RsaI GTAC 1 cut(s) 171
RsaNI GTAC 1 cut(s) 170
RseI CAYNNNNRTG 1 cut(s) 410
SaqAI TTAA 2 cut(s) 51, 778
SatI GCNGC 1 cut(s) 693
ScrFI CCNGG 2 cut(s) 509, 701
SexAI ACCWGGT 1 cut(s) 507
SfaNI GCATC 3 cut(s) 115, 600, 679
SfcI CTRYAG 2 cut(s) 639, 693
SmiMI CAYNNNNRTG 1 cut(s) 410
SmlI CTYRAG 1 cut(s) 50
SmoI CTYRAG 1 cut(s) 50
Sse9I AATT 3 cut(s) 55, 118, 558
SsiI CCGC 1 cut(s) 554
SspMI CTAG 3 cut(s) 299, 626, 686
StyD4I CCNGG 2 cut(s) 507, 699
StyI CCWWGG 2 cut(s) 27, 744
TaaI ACNGT 3 cut(s) 174, 526, 643
TaiI ACGT 1 cut(s) 338
TaqI TCGA 1 cut(s) 761
TasI AATT 3 cut(s) 55, 118, 558
TfiI GAWTC 1 cut(s) 704
Tru1I TTAA 2 cut(s) 51, 778
Tru9I TTAA 2 cut(s) 51, 778
TscAI CASTG 3 cut(s) 179, 297, 335
TseFI GTSAC 3 cut(s) 412, 628, 731
TseI GCWGC 1 cut(s) 692
Tsp45I GTSAC 3 cut(s) 412, 628, 731
TspDTI ATGAA 4 cut(s) 120, 524, 663, 741
TspRI CASTG 3 cut(s) 179, 297, 335
Vha464I CTTAAG 1 cut(s) 50
XapI RAATTY 2 cut(s) 118, 558
XmiI GTMKAC 1 cut(s) 657
XmnI GAANNNNTTC 1 cut(s) 282
XspI CTAG 3 cut(s) 299, 626, 686
ZraI GACGTC 1 cut(s) 336
Zsp2I ATGCAT 2 cut(s) 130, 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.