Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0002323

Physical Location & Seq

Genomic Coordinates Reverse (-)

27764111 .. 27768102

Gene Structure 3992 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGCTGAGGGCTTTTCCTGCCCTTTCCCGCCTGCCCATTCCCTCTTTCCCCATAAGTAATAAGACCACAAGTGCTTTTAGCAGAATGAGCTCAACCCCATCACCAAAATGCCCAAAATTTATTCCTGTGGAAGAGAGTAAGATCTGCTCAATAAGCAAAGCTGATGGTATCAGGTTTAGTCTTGTGTCATATAACATTTTGGCTCAGGTGTACGTAAAGAGCTCTTTGTTTCCACACTCTCCATCCTCCTGTCTCAGGTGGAAAGCTCGCTCGCAGGCCATTTTGAGTGTTGTAAAGAACCTTGGAGCTGACTTTTTCTGTCTACAGGAAGTTGATGAGTATGACAGCTTTTACAAAGGAAATATGGAGAGCAATGGATATTCTAGTACGTATATTCAGAGAAGTGGGCAAAAGCGTGACGGATGTGGAATTTTTTATAAACACGAAATGGCAGATTTGGTGTTGGAGGAGAAAATAGAATACAATGATCTTGTAAACTCAATTAAAGATGGAAATATACCCAGTGATGATAAACCAAATGATAAGAAAGCCACAGGAAATGAAGATGCCGGATCCAAAAATGTTTTCTCCACAGAACTAGAGATTTGGTTGACTGTGACATTTTCTTCACTCTCTTCAGGTTCAATAGTAGAGACCACTCAGGATCGTGGAGATCCTAATCGATCCTCGTGTCAGACTAAAACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000288 GO:0000289 GO:0000956 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005488 GO:0005515 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0019222 GO:0019439 GO:0034641 GO:0034655 GO:0042752 GO:0043170 GO:0043621 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

236

Amino Acids

26.08

Weight (kDa)

7.54

Isoelectric Point (pI)

61.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exo_endo_phos	PF03372	63 - 163	5.7e-08	Endonuclease/Exonuclease/phosphatase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002323)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31500 AT1G31500 AT1G31500 AT1G31500 AT1G31500 AT1G31500 AT1G31500 AT1G31500
fragaria_vesca	FvH4_5g24460 FvH4_5g24460 FvH4_5g24460 FvH4_5g24460 FvH4_5g24460 FvH4_5g24460 FvH4_5g24460
malus_domestica	MD16G1287100.v1.1 MD16G1287200.v1.1
prunus_persica	Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1 Prupe.5G016000_v2.0.a1
pyrus_communis	pycom16g25670
rosa_chinensis	RchiOBHm_Chr7g0214871
rosa_laevigata	RLG00000002713
rosa_multiflora	Rmu_sc0002308.1_g000016 Rmu_ssc0000134.1_g000002
rosa_roxburghii	Rroxscaffold_3G00244950
rosa_rugosa	Rorug07G0147900
rosa_samantha	Rh1CG151100 Rh3AG125900 Rh4AG091900 Rh5CG394900 Rh7AG284800 Rh7BG275700 Rh7BG276300 Rh7BG276700 Rh7CG304000 Rh7DG288300
rosa_wichuraiana	Rw7G024290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	438
AccI	GTMKAC	1 cut(s)	322
AciI	CCGC	1 cut(s)	28
AclWI	GGATC	5 cut(s)	567, 580, 668, 672, 678
AcsI	RAATTY	2 cut(s)	116, 429
AcuI	CTGAAG	1 cut(s)	621
AfaI	GTAC	2 cut(s)	212, 388
AfiI	CCNNNNNNNGG	1 cut(s)	255
AgsI	TTSAA	1 cut(s)	645
AjuI	GAANNNNNNNTTGG	2 cut(s)	569, 601
AluBI	AGCT	6 cut(s)	90, 161, 222, 266, 308, 348
AluI	AGCT	6 cut(s)	90, 161, 222, 266, 308, 348
Alw21I	GWGCWC	2 cut(s)	92, 224
Alw26I	GTCTC	2 cut(s)	257, 647
AlwI	GGATC	5 cut(s)	567, 580, 668, 672, 678
AoxI	GGCC	1 cut(s)	276
ApoI	RAATTY	2 cut(s)	116, 429
AsuHPI	GGTGA	1 cut(s)	93
BamHI	GGATCC	1 cut(s)	572
BanII	GRGCYC	2 cut(s)	92, 224
BauI	CACGAG	1 cut(s)	688
Bbv12I	GWGCWC	2 cut(s)	92, 224
BbvCI	CCTCAGC	1 cut(s)	5
BccI	CCATC	4 cut(s)	106, 158, 250, 503
BcoDI	GTCTC	2 cut(s)	257, 647
BfaI	CTAG	2 cut(s)	384, 599
BfmI	CTRYAG	1 cut(s)	323
BglII	AGATCT	1 cut(s)	141
BmiI	GGNNCC	1 cut(s)	574
BmrI	ACTGGG	1 cut(s)	516
BmsI	GCATC	1 cut(s)	556
BmuI	ACTGGG	1 cut(s)	516
Bpu10I	CCTNAGC	2 cut(s)	5, 204
Bsa29I	ATCGAT	1 cut(s)	682
BsaAI	YACGTR	2 cut(s)	214, 390
BsaBI	GATNNNNATC	1 cut(s)	678
BsaI	GGTCTC	1 cut(s)	647
BsaJI	CCNNGG	1 cut(s)	301
Bsc4I	CCNNNNNNNGG	1 cut(s)	255
Bse1I	ACTGG	1 cut(s)	522
Bse3DI	GCAATG	1 cut(s)	379
Bse8I	GATNNNNATC	1 cut(s)	678
BseCI	ATCGAT	1 cut(s)	682
BseDI	CCNNGG	1 cut(s)	301
BseGI	GGATG	2 cut(s)	242, 428
BseJI	GATNNNNATC	1 cut(s)	678
BseLI	CCNNNNNNNGG	1 cut(s)	255
BseMI	GCAATG	1 cut(s)	379
BseMII	CTCAG	3 cut(s)	218, 268, 674
BseNI	ACTGG	1 cut(s)	522
BseRI	GAGGAG	1 cut(s)	482
BshFI	GGCC	1 cut(s)	278
BshVI	ATCGAT	1 cut(s)	682
BsiHKAI	GWGCWC	2 cut(s)	92, 224
BsiSI	CCGG	1 cut(s)	570
BslI	CCNNNNNNNGG	1 cut(s)	255
BsmAI	GTCTC	2 cut(s)	257, 647
BsnI	GGCC	1 cut(s)	278
Bso31I	GGTCTC	1 cut(s)	647
Bsp1286I	GDGCHC	2 cut(s)	92, 224
Bsp143I	GATC	6 cut(s)	141, 487, 572, 664, 673, 683
BspACI	CCGC	1 cut(s)	28
BspANI	GGCC	1 cut(s)	278
BspCNI	CTCAG	3 cut(s)	217, 267, 673
BspDI	ATCGAT	1 cut(s)	682
BspLI	GGNNCC	1 cut(s)	574
BspPI	GGATC	5 cut(s)	567, 580, 668, 672, 678
BspTNI	GGTCTC	1 cut(s)	647
BsrDI	GCAATG	1 cut(s)	379
BsrI	ACTGG	1 cut(s)	522
BssECI	CCNNGG	1 cut(s)	301
BssMI	GATC	6 cut(s)	141, 487, 572, 664, 673, 683
BssSI	CACGAG	1 cut(s)	688
BssT1I	CCWWGG	1 cut(s)	301
Bst2BI	CACGAG	1 cut(s)	688
Bst4CI	ACNGT	1 cut(s)	616
Bst6I	CTCTTC	2 cut(s)	126, 640
BstBAI	YACGTR	2 cut(s)	214, 390
BstC8I	GCNNGC	4 cut(s)	32, 268, 272, 276
BstDEI	CTNAG	4 cut(s)	5, 204, 254, 660
BstENI	CCTNNNNNAGG	1 cut(s)	253
BstF5I	GGATG	2 cut(s)	242, 428
BstKTI	GATC	6 cut(s)	144, 490, 575, 667, 676, 686
BstMAI	GTCTC	2 cut(s)	257, 647
BstMBI	GATC	6 cut(s)	141, 487, 572, 664, 673, 683
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 87, 153
BstSFI	CTRYAG	1 cut(s)	323
BstSNI	TACGTA	2 cut(s)	214, 390
BstX2I	RGATCY	3 cut(s)	141, 572, 673
BstYI	RGATCY	3 cut(s)	141, 572, 673
Bsu15I	ATCGAT	1 cut(s)	682
BsuRI	GGCC	1 cut(s)	278
BsuTUI	ATCGAT	1 cut(s)	682
BtsCI	GGATG	2 cut(s)	242, 428
BtsIMutI	CAGTG	1 cut(s)	529
Cac8I	GCNNGC	4 cut(s)	32, 268, 272, 276
ClaI	ATCGAT	1 cut(s)	682
Csp6I	GTAC	2 cut(s)	211, 387
CviQI	GTAC	2 cut(s)	211, 387
DdeI	CTNAG	4 cut(s)	5, 204, 254, 660
DpnI	GATC	6 cut(s)	143, 489, 574, 666, 675, 685
DpnII	GATC	6 cut(s)	141, 487, 572, 664, 673, 683
Eam1104I	CTCTTC	2 cut(s)	126, 640
EarI	CTCTTC	2 cut(s)	126, 640
Ecl136II	GAGCTC	2 cut(s)	90, 222
Eco105I	TACGTA	2 cut(s)	214, 390
Eco130I	CCWWGG	1 cut(s)	301
Eco24I	GRGCYC	2 cut(s)	92, 224
Eco31I	GGTCTC	1 cut(s)	647
Eco53kI	GAGCTC	2 cut(s)	90, 222
Eco57I	CTGAAG	1 cut(s)	621
EcoICRI	GAGCTC	2 cut(s)	90, 222
EcoNI	CCTNNNNNAGG	1 cut(s)	253
EcoT14I	CCWWGG	1 cut(s)	301
EcoT38I	GRGCYC	2 cut(s)	92, 224
ErhI	CCWWGG	1 cut(s)	301
FaiI	YATR	8 cut(s)	53, 190, 192, 342, 365, 393, 438, 518
FauI	CCCGC	1 cut(s)	35
FblI	GTMKAC	1 cut(s)	322
FokI	GGATG	2 cut(s)	229, 435
FriOI	GRGCYC	2 cut(s)	92, 224
FspBI	CTAG	2 cut(s)	384, 599
HaeIII	GGCC	1 cut(s)	278
HapII	CCGG	1 cut(s)	570
HincII	GTYRAC	1 cut(s)	612
HindII	GTYRAC	1 cut(s)	612
HpaII	CCGG	1 cut(s)	570
HphI	GGTGA	1 cut(s)	93
Hpy166II	GTNNAC	4 cut(s)	211, 323, 496, 612
Hpy188I	TCNGA	2 cut(s)	399, 696
Hpy188III	TCNNGA	1 cut(s)	662
Hpy8I	GTNNAC	4 cut(s)	211, 323, 496, 612
HpyCH4III	ACNGT	1 cut(s)	616
HpyCH4IV	ACGT	3 cut(s)	213, 389, 704
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 87, 153
HpyF3I	CTNAG	4 cut(s)	5, 204, 254, 660
HpySE526I	ACGT	3 cut(s)	213, 389, 704
Kzo9I	GATC	6 cut(s)	141, 487, 572, 664, 673, 683
LmnI	GCTCC	1 cut(s)	305
LweI	GCATC	1 cut(s)	556
MaeI	CTAG	2 cut(s)	384, 599
MaeII	ACGT	3 cut(s)	213, 389, 704
MaeIII	GTNAC	2 cut(s)	416, 616
MalI	GATC	6 cut(s)	143, 489, 574, 666, 675, 685
MboI	GATC	6 cut(s)	141, 487, 572, 664, 673, 683
MboII	GAAGA	4 cut(s)	143, 575, 618, 627
MflI	RGATCY	3 cut(s)	141, 572, 673
MhlI	GDGCHC	2 cut(s)	92, 224
MluCI	AATT	3 cut(s)	116, 429, 501
MmeI	TCCRAC	1 cut(s)	444
MnlI	CCTC	4 cut(s)	52, 256, 460, 697
MseI	TTAA	1 cut(s)	504
MslI	CAYNNNNRTG	1 cut(s)	106
MspI	CCGG	1 cut(s)	570
MwoI	GCNNNNNNNGC	3 cut(s)	17, 87, 153
NdeII	GATC	6 cut(s)	141, 487, 572, 664, 673, 683
NlaIV	GGNNCC	1 cut(s)	574
NmuCI	GTSAC	2 cut(s)	416, 616
Ppu21I	YACGTR	2 cut(s)	214, 390
PsiI	TTATAA	1 cut(s)	438
Psp124BI	GAGCTC	2 cut(s)	92, 224
PspN4I	GGNNCC	1 cut(s)	574
PsuI	RGATCY	3 cut(s)	141, 572, 673
RsaI	GTAC	2 cut(s)	212, 388
RsaNI	GTAC	2 cut(s)	211, 387
RseI	CAYNNNNRTG	1 cut(s)	106
SacI	GAGCTC	2 cut(s)	92, 224
SaqAI	TTAA	1 cut(s)	504
Sau3AI	GATC	6 cut(s)	141, 487, 572, 664, 673, 683
SduI	GDGCHC	2 cut(s)	92, 224
SfaNI	GCATC	1 cut(s)	556
SfcI	CTRYAG	1 cut(s)	323
SmiMI	CAYNNNNRTG	1 cut(s)	106
SnaBI	TACGTA	2 cut(s)	214, 390
Sse9I	AATT	3 cut(s)	116, 429, 501
SsiI	CCGC	1 cut(s)	28
SspMI	CTAG	2 cut(s)	384, 599
SstI	GAGCTC	2 cut(s)	92, 224
StyI	CCWWGG	1 cut(s)	301
TaaI	ACNGT	1 cut(s)	616
TaiI	ACGT	3 cut(s)	216, 392, 707
TaqI	TCGA	1 cut(s)	682
TasI	AATT	3 cut(s)	116, 429, 501
Tru1I	TTAA	1 cut(s)	504
Tru9I	TTAA	1 cut(s)	504
TscAI	CASTG	1 cut(s)	529
TseFI	GTSAC	2 cut(s)	416, 616
Tsp45I	GTSAC	2 cut(s)	416, 616
TspDTI	ATGAA	1 cut(s)	576
TspGWI	ACGGA	1 cut(s)	435
TspRI	CASTG	1 cut(s)	529
XagI	CCTNNNNNAGG	1 cut(s)	253
XapI	RAATTY	2 cut(s)	116, 429
XmiI	GTMKAC	1 cut(s)	322
XspI	CTAG	2 cut(s)	384, 599

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.