Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0013740

Physical Location & Seq

Genomic Coordinates Forward (+)

173772 .. 173960

Gene Structure 189 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 189 bp

ATGGAGAAAAAGAGACTCAATTGGAAGGTGGAAGAAGGCTCTTCATCAGAGGCAAAGGCTGCGAGGGGTGGAACTGTTGATCCTGCAAAACTGGTTGTGGAACTTGCACCAATGGAAATCCGAACCTTTCTCGTTGAGTTTAACCAAAGCTTTCATTTGATGCCTAACCGAATGAGGCTGAAAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0001775 GO:0002252 GO:0002263 GO:0002274 GO:0002275 GO:0002283 GO:0002366 GO:0002376 GO:0002443 GO:0002444 GO:0002446 GO:0003674 GO:0003824 GO:0004553 GO:0004559 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005766 GO:0005773 GO:0005775 GO:0005975 GO:0005996 GO:0006013 GO:0006464 GO:0006517 GO:0006807 GO:0006810 GO:0006887 GO:0006955 GO:0008150 GO:0008152 GO:0009056 GO:0009100 GO:0009311 GO:0009313 GO:0009987 GO:0012505 GO:0015923 GO:0016052 GO:0016192 GO:0016787 GO:0016798 GO:0019318 GO:0019538 GO:0030141 GO:0031410 GO:0031974 GO:0031982 GO:0031983 GO:0032940 GO:0034774 GO:0035578 GO:0036211 GO:0036230 GO:0042119 GO:0042582 GO:0043170 GO:0043202 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043299 GO:0043312 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0044421 GO:0044422 GO:0044424 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045055 GO:0045321 GO:0046903 GO:0050896 GO:0051179 GO:0051234 GO:0060205 GO:0070013 GO:0071704 GO:0097708 GO:0099503 GO:1901135 GO:1901564 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00511 map00511

Pfam Domains

Protein Families

Alpha-mann_mid Glyco_hydro_38 Glyco_hydro_38C

Protein Analysis

63

Amino Acids

7.13

Weight (kDa)

9.69

Isoelectric Point (pI)

47.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013740)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g10050 pycom06g12320 pycom17g00270
rosa_chinensis	RchiOBHm_Chr7g0188851 RchiOBHm_Chr7g0188871 RchiOBHm_Chr7g0188881
rosa_multiflora	Rmu_co8010942.1_g000001 Rmu_sc0040167.1_g000001
rosa_rugosa	Rorug02G0077700 Rorug04G0116100 RorugMtG0004100.1
rosa_samantha	Rh6DG042700 Rh7AG099300 Rh7BG101300 Rh7CG102600 Rh7DG101000
rosa_wichuraiana	Rw3G020620 Rw7G008550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	74
AloI	GAACNNNNNNTCC	2 cut(s)	64, 96
AluBI	AGCT	1 cut(s)	150
AluI	AGCT	1 cut(s)	150
Alw26I	GTCTC	1 cut(s)	7
AlwI	GGATC	1 cut(s)	74
ApeKI	GCWGC	1 cut(s)	59
BbvI	GCAGC	1 cut(s)	46
BcoDI	GTCTC	1 cut(s)	7
BisI	GCNGC	1 cut(s)	60
BlsI	GCNGC	1 cut(s)	61
BmsI	GCATC	1 cut(s)	150
Bse1I	ACTGG	1 cut(s)	96
BseNI	ACTGG	1 cut(s)	96
BseXI	GCAGC	1 cut(s)	46
BsmAI	GTCTC	1 cut(s)	7
Bsp143I	GATC	1 cut(s)	79
BspPI	GGATC	1 cut(s)	74
BspQI	GCTCTTC	1 cut(s)	46
BsrI	ACTGG	1 cut(s)	96
BssMI	GATC	1 cut(s)	79
Bst4CI	ACNGT	1 cut(s)	76
Bst6I	CTCTTC	1 cut(s)	46
BstAPI	GCANNNNNTGC	1 cut(s)	59
BstKTI	GATC	1 cut(s)	82
BstMAI	GTCTC	1 cut(s)	7
BstMBI	GATC	1 cut(s)	79
BstMWI	GCNNNNNNNGC	1 cut(s)	59
BstV1I	GCAGC	1 cut(s)	46
CviJI	RGCY	4 cut(s)	39, 59, 150, 178
CviKI_1	RGCY	4 cut(s)	39, 59, 150, 178
DpnI	GATC	1 cut(s)	81
DpnII	GATC	1 cut(s)	79
Eam1104I	CTCTTC	1 cut(s)	46
EarI	CTCTTC	1 cut(s)	46
Fnu4HI	GCNGC	1 cut(s)	60
Fsp4HI	GCNGC	1 cut(s)	60
GluI	GCNGC	1 cut(s)	60
HindIII	AAGCTT	1 cut(s)	148
HinfI	GANTC	1 cut(s)	15
Hpy188I	TCNGA	2 cut(s)	49, 122
HpyAV	CCTTC	2 cut(s)	19, 29
HpyCH4III	ACNGT	1 cut(s)	76
HpyCH4V	TGCA	2 cut(s)	86, 107
HpyF10VI	GCNNNNNNNGC	1 cut(s)	59
Kzo9I	GATC	1 cut(s)	79
LguI	GCTCTTC	1 cut(s)	46
LpnPI	CCDG	2 cut(s)	77, 96
Lsp1109I	GCAGC	1 cut(s)	46
LweI	GCATC	1 cut(s)	150
MalI	GATC	1 cut(s)	81
MboI	GATC	1 cut(s)	79
MboII	GAAGA	2 cut(s)	33, 44
MfeI	CAATTG	1 cut(s)	19
MluCI	AATT	1 cut(s)	19
MlyI	GAGTC	1 cut(s)	9
MnlI	CCTC	3 cut(s)	43, 57, 168
MseI	TTAA	1 cut(s)	141
MunI	CAATTG	1 cut(s)	19
MwoI	GCNNNNNNNGC	1 cut(s)	59
NdeII	GATC	1 cut(s)	79
PciSI	GCTCTTC	1 cut(s)	46
PkrI	GCNGC	1 cut(s)	61
PleI	GAGTC	1 cut(s)	9
PpsI	GAGTC	1 cut(s)	9
SapI	GCTCTTC	1 cut(s)	46
SaqAI	TTAA	1 cut(s)	141
SatI	GCNGC	1 cut(s)	60
Sau3AI	GATC	1 cut(s)	79
SchI	GAGTC	1 cut(s)	9
SetI	ASST	3 cut(s)	30, 128, 152
SfaNI	GCATC	1 cut(s)	150
SgeI	CNNG	5 cut(s)	75, 95, 104, 116, 143
Sse9I	AATT	1 cut(s)	19
TaaI	ACNGT	1 cut(s)	76
TasI	AATT	1 cut(s)	19
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TseI	GCWGC	1 cut(s)	59
TspDTI	ATGAA	2 cut(s)	33, 143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.