pycom17g01870

Surfeit locus protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0007923
Physical Location & Seq
Reverse (-)
1187945 .. 1189630
1686 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 909 bp
ATGGTCTCACATTTACACACTCGAATCCAAAAAAATAGGCTCAAAAGGCTTAGGAGTCCAGGACCAGACGAGGCGGCTCTCCATCTCTCTGCGCGGCAACTTGAGAACTCAGGCTACTCAGCAATGGCGACGACTGAGAAGAAGGCGGAGGAGGAGAAGGAAGGGAGCAACCTACTGGGCTCGCCGACCTTCAAGGAGCTTGAAAATGGCCGCTTCCAGTGCGTCGAGACAGGCCACGAATTGGTGGCCAAAGACAAGGAAGTGTACTCTCATAGCAAACGGTGCCGTTTGGGCCTAATCGAATATGCCCTTTCCCATAAGAAAGCTCCTCTCAACATGTTCAAGCAGGATCCTCTTTCCCGTTCAAAGTTGGTTTGTAAACTAACAGGGGATACTATCAATAAGTCAGAGGAGCACATTTGGAAACATATAAATGGGAAACGCTTCCTCAACAAGCTCGAAGAGAAGGAAGAAGAGAAGCTAAAAGCCAAGGGAGTGGTAGCAGAGGTGGATGATCAGAACCCGGAAATAGTATCTGACCAAGAAGAAGACGGAGACAGAAAGAAGAAGAAGAAAAAGAAGAAGAAGAAGAAGGATGATGGAGTTGATGAGATTATGTCTGGAAAAAGTAAGGCTTCTGATGAGGAAGGCGATACAGAAGAAACTGACTTTTGGATGCCTCCAGTGGGAGAACGTTGGGACTTTGACGATGGAGGTGACAGGTGGGGTTCCGGTTCAGAGTCAGAGAATGAGGATGACGAGATTGATGGAGCTGTTTCAGATGGTGCATTTGAAGATGGCGACGAGGAGTCAGAAGAGCTCTCCAAGCGGACGAAAAGAATGTCCATAGAAATTGGACCGAGCAGCTTTGCTTCAAGGAAGAAGAAGAGTAAAAAGAGCACGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SURF2

Protein Analysis

303

Amino Acids

34.15

Weight (kDa)

5.79

Isoelectric Point (pI)

58.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SURF2 PF05477 52 - 297 4.9e-59 Surfeit locus protein 2 (SURF2)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 282
AccB7I CCANNNNNTGG 1 cut(s) 241
AccII CGCG 1 cut(s) 94
AciI CCGC 5 cut(s) 74, 94, 146, 211, 829
AclI AACGTT 1 cut(s) 694
AclWI GGATC 2 cut(s) 344, 357
AcoI YGGCCR 2 cut(s) 208, 246
AfaI GTAC 1 cut(s) 266
AfiI CCNNNNNNNGG 2 cut(s) 241, 686
AflIII ACRYGT 1 cut(s) 336
AgsI TTSAA 6 cut(s) 193, 203, 343, 366, 794, 876
AhdI GACNNNNNGTC 1 cut(s) 808
AjnI CCWGG 1 cut(s) 58
AluBI AGCT 7 cut(s) 199, 326, 457, 481, 773, 820, 867
AluI AGCT 7 cut(s) 199, 326, 457, 481, 773, 820, 867
Alw21I GWGCWC 3 cut(s) 417, 822, 902
Alw26I GTCTC 3 cut(s) 10, 221, 549
AlwI GGATC 2 cut(s) 344, 357
AoxI GGCC 4 cut(s) 208, 232, 246, 292
ApeKI GCWGC 1 cut(s) 864
ArsI GACNNNNNNTTYG 2 cut(s) 827, 859
Asp700I GAANNNNTTC 1 cut(s) 443
AspLEI GCGC 1 cut(s) 94
AspS9I GGNCC 3 cut(s) 62, 292, 857
AsuC2I CCSGG 1 cut(s) 524
AsuHPI GGTGA 1 cut(s) 728
AvaII GGWCC 2 cut(s) 62, 857
BalI TGGCCA 1 cut(s) 248
BamHI GGATCC 1 cut(s) 349
BanI GGYRCC 1 cut(s) 282
BanII GRGCYC 2 cut(s) 182, 822
BbsI GAAGAC 1 cut(s) 555
Bbv12I GWGCWC 3 cut(s) 417, 822, 902
BbvI GCAGC 1 cut(s) 876
BccI CCATC 6 cut(s) 90, 593, 704, 761, 776, 791
BceAI ACGGC 1 cut(s) 270
BciT130I CCWGG 1 cut(s) 60
BciVI GTATCC 1 cut(s) 385
BclI TGATCA 1 cut(s) 514
BcnI CCSGG 1 cut(s) 524
BcoDI GTCTC 3 cut(s) 10, 221, 549
BfuI GTATCC 1 cut(s) 385
BglI GCCNNNNNGGC 1 cut(s) 291
BisI GCNGC 4 cut(s) 75, 95, 211, 865
BlsI GCNGC 4 cut(s) 76, 96, 212, 866
Bme1390I CCNGG 2 cut(s) 60, 524
Bme18I GGWCC 2 cut(s) 62, 857
BmeRI GACNNNNNGTC 1 cut(s) 808
BmgT120I GGNCC 3 cut(s) 62, 292, 857
BmiI GGNNCC 3 cut(s) 284, 351, 730
BmrFI CCNGG 2 cut(s) 60, 524
BmrI ACTGGG 1 cut(s) 185
BmsI GCATC 1 cut(s) 666
BmuI ACTGGG 1 cut(s) 185
BpiI GAAGAC 1 cut(s) 555
BpmI CTGGAG 1 cut(s) 666
Bpu10I CCTNAGC 1 cut(s) 50
BpuEI CTTGAG 1 cut(s) 122
BpuMI CCSGG 1 cut(s) 524
BsaI GGTCTC 1 cut(s) 10
BsaJI CCNNGG 1 cut(s) 489
BsaWI WCCGGW 1 cut(s) 731
Bsc4I CCNNNNNNNGG 2 cut(s) 241, 686
Bse1I ACTGG 3 cut(s) 180, 217, 683
Bse3DI GCAATG 1 cut(s) 129
BseBI CCWGG 1 cut(s) 60
BseDI CCNNGG 1 cut(s) 489
BseGI GGATG 4 cut(s) 517, 601, 681, 760
BseLI CCNNNNNNNGG 2 cut(s) 241, 686
BseMI GCAATG 1 cut(s) 129
BseMII CTCAG 3 cut(s) 123, 126, 132
BseNI ACTGG 3 cut(s) 180, 217, 683
BseRI GAGGAG 5 cut(s) 164, 167, 318, 425, 821
BseXI GCAGC 1 cut(s) 876
Bsh1236I CGCG 1 cut(s) 94
BshFI GGCC 4 cut(s) 210, 234, 248, 294
BshNI GGYRCC 1 cut(s) 282
BsiHKAI GWGCWC 3 cut(s) 417, 822, 902
BsiSI CCGG 2 cut(s) 524, 732
BslFI GGGAC 1 cut(s) 713
BslI CCNNNNNNNGG 2 cut(s) 241, 686
BsmAI GTCTC 3 cut(s) 10, 221, 549
BsmFI GGGAC 1 cut(s) 713
BsnI GGCC 4 cut(s) 210, 234, 248, 294
Bso31I GGTCTC 1 cut(s) 10
Bsp1286I GDGCHC 4 cut(s) 182, 417, 822, 902
Bsp143I GATC 2 cut(s) 349, 514
BspACI CCGC 5 cut(s) 74, 94, 146, 211, 829
BspANI GGCC 4 cut(s) 210, 234, 248, 294
BspCNI CTCAG 3 cut(s) 122, 127, 131
BspFNI CGCG 1 cut(s) 94
BspLI GGNNCC 3 cut(s) 284, 351, 730
BspPI GGATC 2 cut(s) 344, 357
BspQI GCTCTTC 1 cut(s) 810
BspT107I GGYRCC 1 cut(s) 282
BspTNI GGTCTC 1 cut(s) 10
BsrDI GCAATG 1 cut(s) 129
BsrI ACTGG 3 cut(s) 180, 217, 683
BssECI CCNNGG 1 cut(s) 489
BssMI GATC 2 cut(s) 349, 514
BssT1I CCWWGG 1 cut(s) 489
Bst2UI CCWGG 1 cut(s) 60
Bst4CI ACNGT 1 cut(s) 282
Bst6I CTCTTC 4 cut(s) 456, 468, 810, 881
BstAPI GCANNNNNTGC 1 cut(s) 282
BstC8I GCNNGC 1 cut(s) 182
BstDEI CTNAG 4 cut(s) 50, 109, 118, 135
BstF5I GGATG 4 cut(s) 517, 601, 681, 760
BstFNI CGCG 1 cut(s) 94
BstHHI GCGC 1 cut(s) 94
BstKTI GATC 2 cut(s) 352, 517
BstMAI GTCTC 3 cut(s) 10, 221, 549
BstMBI GATC 2 cut(s) 349, 514
BstMWI GCNNNNNNNGC 5 cut(s) 46, 219, 282, 291, 826
BstNI CCWGG 1 cut(s) 60
BstNSI RCATGY 1 cut(s) 340
BstSCI CCNGG 2 cut(s) 58, 522
BstUI CGCG 1 cut(s) 94
BstV1I GCAGC 1 cut(s) 876
BstV2I GAAGAC 1 cut(s) 555
BstX2I RGATCY 1 cut(s) 349
BstXI CCANNNNNNTGG 1 cut(s) 496
BstYI RGATCY 1 cut(s) 349
BsuI GTATCC 1 cut(s) 385
BsuRI GGCC 4 cut(s) 210, 234, 248, 294
BtsCI GGATG 4 cut(s) 517, 601, 681, 760
BtsIMutI CAGTG 2 cut(s) 224, 690
Cac8I GCNNGC 1 cut(s) 182
CfoI GCGC 1 cut(s) 94
Cfr13I GGNCC 3 cut(s) 62, 292, 857
CseI GACGC 1 cut(s) 211
Csp6I GTAC 1 cut(s) 265
CviAII CATG 2 cut(s) 337, 906
CviQI GTAC 1 cut(s) 265
DdeI CTNAG 4 cut(s) 50, 109, 118, 135
DpnI GATC 2 cut(s) 351, 516
DpnII GATC 2 cut(s) 349, 514
DriI GACNNNNNGTC 1 cut(s) 808
EaeI YGGCCR 2 cut(s) 208, 246
Eam1104I CTCTTC 4 cut(s) 456, 468, 810, 881
Eam1105I GACNNNNNGTC 1 cut(s) 808
EarI CTCTTC 4 cut(s) 456, 468, 810, 881
EciI GGCGGA 1 cut(s) 161
Ecl136II GAGCTC 1 cut(s) 820
Eco130I CCWWGG 1 cut(s) 489
Eco24I GRGCYC 2 cut(s) 182, 822
Eco31I GGTCTC 1 cut(s) 10
Eco47I GGWCC 2 cut(s) 62, 857
Eco53kI GAGCTC 1 cut(s) 820
EcoICRI GAGCTC 1 cut(s) 820
EcoRII CCWGG 1 cut(s) 58
EcoT14I CCWWGG 1 cut(s) 489
EcoT38I GRGCYC 2 cut(s) 182, 822
ErhI CCWWGG 1 cut(s) 489
FaeI CATG 2 cut(s) 340, 909
FaiI YATR 9 cut(s) 273, 306, 318, 338, 429, 431, 617, 848, 907
FalI AAGNNNNNCTT 2 cut(s) 619, 651
FaqI GGGAC 1 cut(s) 713
FatI CATG 2 cut(s) 336, 905
FbaI TGATCA 1 cut(s) 514
Fnu4HI GCNGC 4 cut(s) 75, 95, 211, 865
FokI GGATG 4 cut(s) 524, 608, 688, 767
FriOI GRGCYC 2 cut(s) 182, 822
Fsp4HI GCNGC 4 cut(s) 75, 95, 211, 865
GlaI GCGC 1 cut(s) 93
GluI GCNGC 4 cut(s) 75, 95, 211, 865
GsuI CTGGAG 1 cut(s) 666
HaeIII GGCC 4 cut(s) 210, 234, 248, 294
HapII CCGG 2 cut(s) 524, 732
HgaI GACGC 1 cut(s) 211
HhaI GCGC 1 cut(s) 94
Hin1II CATG 2 cut(s) 340, 909
Hin6I GCGC 1 cut(s) 92
HinP1I GCGC 1 cut(s) 92
HinfI GANTC 4 cut(s) 24, 55, 740, 809
HpaII CCGG 2 cut(s) 524, 732
HphI GGTGA 1 cut(s) 728
Hpy166II GTNNAC 2 cut(s) 265, 380
Hpy188I TCNGA 8 cut(s) 409, 519, 538, 640, 739, 745, 781, 814
Hpy188III TCNNGA 2 cut(s) 226, 621
Hpy8I GTNNAC 2 cut(s) 265, 380
Hpy99I CGWCG 3 cut(s) 133, 227, 806
HpyAV CCTTC 7 cut(s) 136, 151, 155, 199, 460, 586, 641
HpyCH4III ACNGT 1 cut(s) 282
HpyCH4IV ACGT 1 cut(s) 694
HpyCH4V TGCA 1 cut(s) 788
HpyF10VI GCNNNNNNNGC 5 cut(s) 46, 219, 282, 291, 826
HpyF3I CTNAG 4 cut(s) 50, 109, 118, 135
HpySE526I ACGT 1 cut(s) 694
Hsp92II CATG 2 cut(s) 340, 909
HspAI GCGC 1 cut(s) 92
Ksp22I TGATCA 1 cut(s) 514
Kzo9I GATC 2 cut(s) 349, 514
LguI GCTCTTC 1 cut(s) 810
LmnI GCTCC 5 cut(s) 165, 196, 331, 412, 770
Lsp1109I GCAGC 1 cut(s) 876
LweI GCATC 1 cut(s) 666
MaeII ACGT 1 cut(s) 694
MaeIII GTNAC 1 cut(s) 716
MalI GATC 2 cut(s) 351, 516
MboI GATC 2 cut(s) 349, 514
MflI RGATCY 1 cut(s) 349
MhlI GDGCHC 4 cut(s) 182, 417, 822, 902
MlsI TGGCCA 1 cut(s) 248
MluCI AATT 2 cut(s) 239, 852
MluNI TGGCCA 1 cut(s) 248
MlyI GAGTC 3 cut(s) 64, 749, 818
Mox20I TGGCCA 1 cut(s) 248
MroXI GAANNNNTTC 1 cut(s) 443
MscI TGGCCA 1 cut(s) 248
MslI CAYNNNNRTG 1 cut(s) 432
Msp20I TGGCCA 1 cut(s) 248
MspI CCGG 2 cut(s) 524, 732
MspR9I CCNGG 2 cut(s) 60, 524
MvaI CCWGG 1 cut(s) 60
MvnI CGCG 1 cut(s) 94
MwoI GCNNNNNNNGC 5 cut(s) 46, 219, 282, 291, 826
NciI CCSGG 1 cut(s) 524
NdeII GATC 2 cut(s) 349, 514
NlaIII CATG 2 cut(s) 340, 909
NlaIV GGNNCC 3 cut(s) 284, 351, 730
NmuCI GTSAC 1 cut(s) 716
NspI RCATGY 1 cut(s) 340
PciI ACATGT 1 cut(s) 336
PciSI GCTCTTC 1 cut(s) 810
PdmI GAANNNNTTC 1 cut(s) 443
PfeI GAWTC 1 cut(s) 24
PflMI CCANNNNNTGG 1 cut(s) 241
PfoI TCCNGGA 1 cut(s) 58
PkrI GCNGC 4 cut(s) 76, 96, 212, 866
PleI GAGTC 3 cut(s) 63, 748, 817
PpsI GAGTC 3 cut(s) 63, 748, 817
PscI ACATGT 1 cut(s) 336
Psp124BI GAGCTC 1 cut(s) 822
Psp1406I AACGTT 1 cut(s) 694
Psp6I CCWGG 1 cut(s) 58
PspGI CCWGG 1 cut(s) 58
PspN4I GGNNCC 3 cut(s) 284, 351, 730
PspPI GGNCC 3 cut(s) 62, 292, 857
PsrI GAACNNNNNNTAC 2 cut(s) 98, 130
PsuI RGATCY 1 cut(s) 349
RsaI GTAC 1 cut(s) 266
RsaNI GTAC 1 cut(s) 265
RseI CAYNNNNRTG 1 cut(s) 432
SacI GAGCTC 1 cut(s) 822
SapI GCTCTTC 1 cut(s) 810
SatI GCNGC 4 cut(s) 75, 95, 211, 865
Sau3AI GATC 2 cut(s) 349, 514
Sau96I GGNCC 3 cut(s) 62, 292, 857
SchI GAGTC 3 cut(s) 64, 749, 818
ScrFI CCNGG 2 cut(s) 60, 524
SduI GDGCHC 4 cut(s) 182, 417, 822, 902
SfaNI GCATC 1 cut(s) 666
SinI GGWCC 2 cut(s) 62, 857
SmiMI CAYNNNNRTG 1 cut(s) 432
SmlI CTYRAG 1 cut(s) 101
SmoI CTYRAG 1 cut(s) 101
Sse9I AATT 2 cut(s) 239, 852
SsiI CCGC 5 cut(s) 74, 94, 146, 211, 829
SstI GAGCTC 1 cut(s) 822
StyD4I CCNGG 2 cut(s) 58, 522
StyI CCWWGG 1 cut(s) 489
TaaI ACNGT 1 cut(s) 282
TaiI ACGT 1 cut(s) 697
TaqI TCGA 4 cut(s) 22, 225, 300, 459
TaqII GACCGA 1 cut(s) 874
TasI AATT 2 cut(s) 239, 852
TatI WGTACW 1 cut(s) 264
TauI GCSGC 3 cut(s) 77, 97, 213
TfiI GAWTC 1 cut(s) 24
TscAI CASTG 2 cut(s) 224, 690
TseFI GTSAC 1 cut(s) 716
TseI GCWGC 1 cut(s) 864
Tsp45I GTSAC 1 cut(s) 716
TspGWI ACGGA 1 cut(s) 567
TspRI CASTG 2 cut(s) 224, 690
Van91I CCANNNNNTGG 1 cut(s) 241
VpaK11BI GGWCC 2 cut(s) 62, 857
XceI RCATGY 1 cut(s) 340
XmnI GAANNNNTTC 1 cut(s) 443
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.