Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0010934

Physical Location & Seq

Genomic Coordinates Reverse (-)

1209302 .. 1211053

Gene Structure 1752 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGACGACCACCACAAAACGACGTCGTCGTCGGAAGCGGCGGTGATTGAGCACAGGGCGTACGCGAGGGTGGGCCTGCTGGGGAACCCGAGCGACGTCTACTACGGCCGCACGATCTCCTTCACCGCCGGTAACTTCTGGGCCACCGTGCGGTTGCAGCCGTCCGATGATCTCGTCATCCAGCCCCACCCCACCCACGACAACGTCGTCTTCCGATCCCTCCATCACCTGGTGAATCGGTTAGATAGTGAGGGATATTATGGAGGTGTTCGATTGCTGATGGCGATTTGCAAAGTGTTCTTTGATTATTGCAAGGAAAATGCGATTGAATTGGAAGCTCGAAATTTCACCCTCTCGTATGATACGAATATCCCTCGCCAGGCAGGACTTTCGGGGTCTAGTGCGATTGTGTGTGCAGCCCTGAGCTGCCTTCTTGACTTCCACAAGGTTAGGCATTTAATCAAAGTGGAGGTCCGCCCCGGCCTCGTCCTCAATGCCGAGAAGCAACTTGGAATTGTTGCCGGTCTTCAAGATCGCGTGGCGCAGGTTTATGGCGGCCTTGTTTACATGGAATTTGCCAAGGAAGACATGGATACATTGGGGCATGGAATTTACACACCCATGGATGTTAGTCTTCTTCCGCCTCTTCATCTCATCTATGCCGAGAATCCAAGCGATTCTGGGAAGGTACATAGTACAGTTCGTCAAAGGTGGCTCAACGGTGATGAGTTTATAATATCATCAATGACAGAAGTTGCAGATATTGCACTAGAAGGAAGGATGGCTTTAGTTGAAAAGGACTACGCTAAATTAGCTTCTCTCATGAACAGAAATTTTGACCTTAGAAGAAGCATGTTCGGAGACGATGCTCTAGGTGCTTTAAACATAGAAATGGTGGAGGTGGCCCGAAGGGTGGGTGCAGCATCCAAATTCACAGGCAGCGGAGGGGCAGTCGTCGTGTTTTGCCCCGATGGTCCTTTACAAGTGAAGCACTTGGAGGATGAGTGTCGAAAGGCTGGCTTTAAACTTGAACAGATAGAAGTCATTCCCTCTCTTCTAAACGAGGTTGACCTACAAACCTTGTCAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006020 GO:0006066 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0009856 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019751 GO:0022414 GO:0032501 GO:0032502 GO:0042546 GO:0044085 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0047940 GO:0048856 GO:0048868 GO:0051704 GO:0071554 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00040 ko00053 ko00520 ko01100 map00040 map00053 map00520 map01100

Pfam Domains

Protein Families

GHMP_kinases_C GHMP_kinases_N

Protein Analysis

364

Amino Acids

40.17

Weight (kDa)

5.72

Isoelectric Point (pI)

41.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GHMP_kinases_N	PF00288	108 - 186	1.7e-09	GHMP kinases N terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01640 AT3G01640 AT5G14470
fragaria_vesca	FvH4_6g51800 FvH4_6g51800
malus_domestica	MD09G1023000.v1.1 MD17G1022300.v1.1
prunus_persica	Prupe.3G293800_v2.0.a1
pyrus_communis	pycom111g01930 pycom17g01930
rosa_chinensis	RchiOBHm_Chr2g0173281
rosa_laevigata	RLG00000022176
rosa_multiflora	Rmu_sc0010961.1_g000007
rosa_roxburghii	Rroxscaffold_2G00079080
rosa_rugosa	Rorug02G0567000
rosa_samantha	Rh2AG647400 Rh2BG657900 Rh2CG623300 Rh2DG671700
rosa_wichuraiana	Rw2G053140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	734
AasI	GACNNNNNNGTC	2 cut(s)	28, 206
AatII	GACGTC	2 cut(s)	26, 99
Acc36I	ACCTGC	1 cut(s)	535
AccB7I	CCANNNNNTGG	1 cut(s)	229
AccI	GTMKAC	1 cut(s)	99
AccII	CGCG	2 cut(s)	65, 537
AciI	CCGC	9 cut(s)	38, 41, 109, 126, 151, 475, 555, 641, 942
AclWI	GGATC	1 cut(s)	210
AcoI	YGGCCR	1 cut(s)	106
AcsI	RAATTY	5 cut(s)	343, 572, 609, 832, 929
AcyI	GRCGYC	2 cut(s)	23, 96
AdeI	CACNNNGTG	1 cut(s)	232
AfaI	GTAC	3 cut(s)	62, 690, 697
AfiI	CCNNNNNNNGG	4 cut(s)	150, 229, 379, 913
AgsI	TTSAA	4 cut(s)	329, 530, 794, 1031
AjnI	CCWGG	2 cut(s)	228, 378
AluBI	AGCT	3 cut(s)	338, 426, 815
AluI	AGCT	3 cut(s)	338, 426, 815
Alw21I	GWGCWC	1 cut(s)	54
Alw26I	GTCTC	1 cut(s)	855
AlwI	GGATC	1 cut(s)	210
Ama87I	CYCGRG	1 cut(s)	88
AoxI	GGCC	6 cut(s)	73, 106, 141, 481, 556, 903
ApeKI	GCWGC	5 cut(s)	157, 416, 426, 920, 939
ApoI	RAATTY	5 cut(s)	343, 572, 609, 832, 929
ArsI	GACNNNNNNTTYG	2 cut(s)	456, 488
Asp700I	GAANNNNTTC	1 cut(s)	1044
AspLEI	GCGC	1 cut(s)	544
AspS9I	GGNCC	5 cut(s)	73, 141, 472, 904, 974
AsuC2I	CCSGG	1 cut(s)	480
AsuHPI	GGTGA	6 cut(s)	55, 115, 218, 244, 340, 734
AvaI	CYCGRG	1 cut(s)	88
AvaII	GGWCC	2 cut(s)	472, 974
BbsI	GAAGAC	4 cut(s)	202, 518, 591, 626
Bbv12I	GWGCWC	1 cut(s)	54
BbvI	GCAGC	5 cut(s)	169, 413, 428, 932, 951
BccI	CCATC	4 cut(s)	231, 274, 775, 965
BceAI	ACGGC	2 cut(s)	121, 145
BcgI	CGANNNNNNTGC	2 cut(s)	372, 406
BciT130I	CCWGG	2 cut(s)	230, 380
BciVI	GTATCC	1 cut(s)	586
BcnI	CCSGG	1 cut(s)	480
BcoDI	GTCTC	1 cut(s)	855
BfaI	CTAG	3 cut(s)	399, 770, 872
BfuAI	ACCTGC	1 cut(s)	535
BfuI	GTATCC	1 cut(s)	586
BisI	GCNGC	8 cut(s)	39, 109, 158, 417, 427, 556, 921, 940
BlsI	GCNGC	8 cut(s)	40, 110, 159, 418, 428, 557, 922, 941
Bme1390I	CCNGG	3 cut(s)	230, 380, 480
Bme18I	GGWCC	2 cut(s)	472, 974
BmeT110I	CYCGRG	1 cut(s)	88
BmgT120I	GGNCC	5 cut(s)	73, 141, 472, 904, 974
BmiI	GGNNCC	1 cut(s)	86
BmrFI	CCNGG	3 cut(s)	230, 380, 480
BmsI	GCATC	2 cut(s)	856, 932
BpiI	GAAGAC	4 cut(s)	202, 518, 591, 626
Bpu10I	CCTNAGC	1 cut(s)	422
BpuMI	CCSGG	1 cut(s)	480
BsaHI	GRCGYC	2 cut(s)	23, 96
BsaJI	CCNNGG	3 cut(s)	478, 579, 621
BsaXI	ACNNNNNCTCC	4 cut(s)	936, 966, 989, 1019
Bsc4I	CCNNNNNNNGG	4 cut(s)	150, 229, 379, 913
Bse118I	RCCGGY	2 cut(s)	128, 521
BseBI	CCWGG	2 cut(s)	230, 380
BseDI	CCNNGG	3 cut(s)	478, 579, 621
BseGI	GGATG	5 cut(s)	177, 631, 786, 923, 1006
BseLI	CCNNNNNNNGG	4 cut(s)	150, 229, 379, 913
BseMII	CTCAG	1 cut(s)	413
BseX3I	CGGCCG	1 cut(s)	106
BseXI	GCAGC	5 cut(s)	169, 413, 428, 932, 951
BseYI	CCCAGC	1 cut(s)	79
BsgI	GTGCAG	2 cut(s)	435, 939
Bsh1236I	CGCG	2 cut(s)	65, 537
Bsh1285I	CGRYCG	1 cut(s)	109
BshFI	GGCC	6 cut(s)	75, 108, 143, 483, 558, 905
BsiEI	CGRYCG	1 cut(s)	109
BsiHKAI	GWGCWC	1 cut(s)	54
BsiHKCI	CYCGRG	1 cut(s)	88
BsiSI	CCGG	3 cut(s)	129, 480, 522
BsiWI	CGTACG	1 cut(s)	60
BslI	CCNNNNNNNGG	4 cut(s)	150, 229, 379, 913
BsmAI	GTCTC	1 cut(s)	855
BsmBI	CGTCTC	1 cut(s)	855
BsnI	GGCC	6 cut(s)	75, 108, 143, 483, 558, 905
BsoBI	CYCGRG	1 cut(s)	88
Bsp1286I	GDGCHC	1 cut(s)	54
Bsp143I	GATC	4 cut(s)	114, 169, 215, 532
Bsp19I	CCATGG	1 cut(s)	621
BspACI	CCGC	9 cut(s)	38, 41, 109, 126, 151, 475, 555, 641, 942
BspANI	GGCC	6 cut(s)	75, 108, 143, 483, 558, 905
BspCNI	CTCAG	1 cut(s)	414
BspFNI	CGCG	2 cut(s)	65, 537
BspHI	TCATGA	1 cut(s)	822
BspLI	GGNNCC	1 cut(s)	86
BspMI	ACCTGC	1 cut(s)	535
BspPI	GGATC	1 cut(s)	210
BsrFI	RCCGGY	2 cut(s)	128, 521
BssAI	RCCGGY	2 cut(s)	128, 521
BssECI	CCNNGG	3 cut(s)	478, 579, 621
BssMI	GATC	4 cut(s)	114, 169, 215, 532
BssNI	GRCGYC	2 cut(s)	23, 96
BssT1I	CCWWGG	2 cut(s)	579, 621
Bst2UI	CCWGG	2 cut(s)	230, 380
Bst4CI	ACNGT	3 cut(s)	148, 700, 722
Bst6I	CTCTTC	2 cut(s)	651, 1059
BstACI	GRCGYC	2 cut(s)	23, 96
BstAPI	GCANNNNNTGC	1 cut(s)	764
BstC8I	GCNNGC	2 cut(s)	77, 1018
BstDEI	CTNAG	2 cut(s)	422, 842
BstDSI	CCRYGG	1 cut(s)	621
BstF5I	GGATG	5 cut(s)	177, 631, 786, 923, 1006
BstFNI	CGCG	2 cut(s)	65, 537
BstHHI	GCGC	1 cut(s)	544
BstKTI	GATC	4 cut(s)	117, 172, 218, 535
BstMAI	GTCTC	1 cut(s)	855
BstMBI	GATC	4 cut(s)	114, 169, 215, 532
BstMCI	CGRYCG	1 cut(s)	109
BstMWI	GCNNNNNNNGC	4 cut(s)	157, 764, 812, 875
BstNI	CCWGG	2 cut(s)	230, 380
BstNSI	RCATGY	1 cut(s)	856
BstSCI	CCNGG	3 cut(s)	228, 378, 478
BstUI	CGCG	2 cut(s)	65, 537
BstV1I	GCAGC	5 cut(s)	169, 413, 428, 932, 951
BstV2I	GAAGAC	4 cut(s)	202, 518, 591, 626
BstZI	CGGCCG	1 cut(s)	106
BsuI	GTATCC	1 cut(s)	586
BsuRI	GGCC	6 cut(s)	75, 108, 143, 483, 558, 905
BtgI	CCRYGG	1 cut(s)	621
BtsCI	GGATG	5 cut(s)	177, 631, 786, 923, 1006
BveI	ACCTGC	1 cut(s)	535
Cac8I	GCNNGC	2 cut(s)	77, 1018
CciI	TCATGA	1 cut(s)	822
CfoI	GCGC	1 cut(s)	544
Cfr10I	RCCGGY	2 cut(s)	128, 521
Cfr13I	GGNCC	5 cut(s)	73, 141, 472, 904, 974
CsiI	ACCWGGT	1 cut(s)	228
Csp6I	GTAC	3 cut(s)	61, 689, 696
CviAII	CATG	6 cut(s)	568, 589, 605, 622, 823, 853
CviQI	GTAC	3 cut(s)	61, 689, 696
DdeI	CTNAG	2 cut(s)	422, 842
DpnI	GATC	4 cut(s)	116, 171, 217, 534
DpnII	GATC	4 cut(s)	114, 169, 215, 532
DraI	TTTAAA	2 cut(s)	882, 1024
DraIII	CACNNNGTG	1 cut(s)	232
DrdI	GACNNNNNNGTC	2 cut(s)	28, 206
DseDI	GACNNNNNNGTC	2 cut(s)	28, 206
EaeI	YGGCCR	1 cut(s)	106
EagI	CGGCCG	1 cut(s)	106
Eam1104I	CTCTTC	2 cut(s)	651, 1059
EarI	CTCTTC	2 cut(s)	651, 1059
EciI	GGCGGA	2 cut(s)	464, 630
EclXI	CGGCCG	1 cut(s)	106
Eco130I	CCWWGG	2 cut(s)	579, 621
Eco47I	GGWCC	2 cut(s)	472, 974
Eco52I	CGGCCG	1 cut(s)	106
Eco88I	CYCGRG	1 cut(s)	88
EcoRII	CCWGG	2 cut(s)	228, 378
EcoT14I	CCWWGG	2 cut(s)	579, 621
ErhI	CCWWGG	2 cut(s)	579, 621
Esp3I	CGTCTC	1 cut(s)	855
FaeI	CATG	6 cut(s)	571, 592, 608, 625, 826, 856
FalI	AAGNNNNNCTT	4 cut(s)	769, 801, 1004, 1036
FatI	CATG	6 cut(s)	567, 588, 604, 621, 822, 852
FblI	GTMKAC	1 cut(s)	99
Fnu4HI	GCNGC	8 cut(s)	39, 109, 158, 417, 427, 556, 921, 940
FokI	GGATG	5 cut(s)	164, 638, 793, 910, 1013
Fsp4HI	GCNGC	8 cut(s)	39, 109, 158, 417, 427, 556, 921, 940
FspBI	CTAG	3 cut(s)	399, 770, 872
GlaI	GCGC	1 cut(s)	543
GluI	GCNGC	8 cut(s)	39, 109, 158, 417, 427, 556, 921, 940
GsaI	CCCAGC	1 cut(s)	83
HaeIII	GGCC	6 cut(s)	75, 108, 143, 483, 558, 905
HapII	CCGG	3 cut(s)	129, 480, 522
HhaI	GCGC	1 cut(s)	544
Hin1I	GRCGYC	2 cut(s)	23, 96
Hin1II	CATG	6 cut(s)	571, 592, 608, 625, 826, 856
Hin6I	GCGC	1 cut(s)	542
HinP1I	GCGC	1 cut(s)	542
HincII	GTYRAC	1 cut(s)	1069
HindII	GTYRAC	1 cut(s)	1069
HinfI	GANTC	3 cut(s)	235, 667, 677
HpaII	CCGG	3 cut(s)	129, 480, 522
HphI	GGTGA	6 cut(s)	55, 115, 218, 244, 340, 734
Hpy166II	GTNNAC	3 cut(s)	100, 565, 1069
Hpy188I	TCNGA	4 cut(s)	34, 166, 215, 860
Hpy188III	TCNNGA	3 cut(s)	434, 530, 823
Hpy8I	GTNNAC	3 cut(s)	100, 565, 1069
Hpy99I	CGWCG	7 cut(s)	25, 28, 31, 34, 98, 209, 959
HpyAV	CCTTC	6 cut(s)	130, 440, 679, 767, 771, 903
HpyCH4III	ACNGT	3 cut(s)	148, 700, 722
HpyCH4IV	ACGT	3 cut(s)	23, 96, 204
HpyCH4V	TGCA	7 cut(s)	157, 291, 312, 416, 758, 767, 920
HpyF10VI	GCNNNNNNNGC	4 cut(s)	157, 764, 812, 875
HpyF3I	CTNAG	2 cut(s)	422, 842
HpySE526I	ACGT	3 cut(s)	23, 96, 204
Hsp92I	GRCGYC	2 cut(s)	23, 96
Hsp92II	CATG	6 cut(s)	571, 592, 608, 625, 826, 856
HspAI	GCGC	1 cut(s)	542
Kzo9I	GATC	4 cut(s)	114, 169, 215, 532
Lsp1109I	GCAGC	5 cut(s)	169, 413, 428, 932, 951
LweI	GCATC	2 cut(s)	856, 932
MabI	ACCWGGT	1 cut(s)	228
MaeI	CTAG	3 cut(s)	399, 770, 872
MaeII	ACGT	3 cut(s)	23, 96, 204
MaeIII	GTNAC	1 cut(s)	131
MalI	GATC	4 cut(s)	116, 171, 217, 534
MboI	GATC	4 cut(s)	114, 169, 215, 532
MboII	GAAGA	8 cut(s)	202, 518, 596, 626, 629, 638, 858, 1046
MhlI	GDGCHC	1 cut(s)	54
MluCI	AATT	8 cut(s)	329, 343, 513, 572, 609, 809, 832, 929
MmeI	TCCRAC	1 cut(s)	12
MroXI	GAANNNNTTC	1 cut(s)	1044
MseI	TTAA	3 cut(s)	458, 881, 1023
MslI	CAYNNNNRTG	2 cut(s)	620, 890
MspA1I	CMGCKG	1 cut(s)	942
MspI	CCGG	3 cut(s)	129, 480, 522
MspR9I	CCNGG	3 cut(s)	230, 380, 480
MvaI	CCWGG	2 cut(s)	230, 380
MvnI	CGCG	2 cut(s)	65, 537
MwoI	GCNNNNNNNGC	4 cut(s)	157, 764, 812, 875
NciI	CCSGG	1 cut(s)	480
NcoI	CCATGG	1 cut(s)	621
NdeII	GATC	4 cut(s)	114, 169, 215, 532
NlaIII	CATG	6 cut(s)	571, 592, 608, 625, 826, 856
NlaIV	GGNNCC	1 cut(s)	86
NmeAIII	GCCGAG	2 cut(s)	523, 688
NspI	RCATGY	1 cut(s)	856
PagI	TCATGA	1 cut(s)	822
PcsI	WCGNNNNNNNCGW	3 cut(s)	26, 204, 362
PdmI	GAANNNNTTC	1 cut(s)	1044
PfeI	GAWTC	3 cut(s)	235, 667, 677
Pfl23II	CGTACG	1 cut(s)	60
PflFI	GACNNNGTC	2 cut(s)	25, 203
PflMI	CCANNNNNTGG	1 cut(s)	229
PkrI	GCNGC	8 cut(s)	40, 110, 159, 418, 428, 557, 922, 941
PsiI	TTATAA	1 cut(s)	734
Psp6I	CCWGG	2 cut(s)	228, 378
PspFI	CCCAGC	1 cut(s)	79
PspGI	CCWGG	2 cut(s)	228, 378
PspLI	CGTACG	1 cut(s)	60
PspN4I	GGNNCC	1 cut(s)	86
PspPI	GGNCC	5 cut(s)	73, 141, 472, 904, 974
PsyI	GACNNNGTC	2 cut(s)	25, 203
RsaI	GTAC	3 cut(s)	62, 690, 697
RsaNI	GTAC	3 cut(s)	61, 689, 696
RseI	CAYNNNNRTG	2 cut(s)	620, 890
SaqAI	TTAA	3 cut(s)	458, 881, 1023
SatI	GCNGC	8 cut(s)	39, 109, 158, 417, 427, 556, 921, 940
Sau3AI	GATC	4 cut(s)	114, 169, 215, 532
Sau96I	GGNCC	5 cut(s)	73, 141, 472, 904, 974
ScrFI	CCNGG	3 cut(s)	230, 380, 480
SduI	GDGCHC	1 cut(s)	54
SexAI	ACCWGGT	1 cut(s)	228
SfaNI	GCATC	2 cut(s)	856, 932
SinI	GGWCC	2 cut(s)	472, 974
SmiMI	CAYNNNNRTG	2 cut(s)	620, 890
Sse9I	AATT	8 cut(s)	329, 343, 513, 572, 609, 809, 832, 929
SsiI	CCGC	9 cut(s)	38, 41, 109, 126, 151, 475, 555, 641, 942
SspMI	CTAG	3 cut(s)	399, 770, 872
StyD4I	CCNGG	3 cut(s)	228, 378, 478
StyI	CCWWGG	2 cut(s)	579, 621
TaaI	ACNGT	3 cut(s)	148, 700, 722
TaiI	ACGT	3 cut(s)	26, 99, 207
TaqI	TCGA	3 cut(s)	271, 340, 1009
TasI	AATT	8 cut(s)	329, 343, 513, 572, 609, 809, 832, 929
TatI	WGTACW	1 cut(s)	695
TauI	GCSGC	3 cut(s)	41, 111, 558
TfiI	GAWTC	3 cut(s)	235, 667, 677
Tru1I	TTAA	3 cut(s)	458, 881, 1023
Tru9I	TTAA	3 cut(s)	458, 881, 1023
TseI	GCWGC	5 cut(s)	157, 416, 426, 920, 939
TspDTI	ATGAA	2 cut(s)	638, 839
Tth111I	GACNNNGTC	2 cut(s)	25, 203
Van91I	CCANNNNNTGG	1 cut(s)	229
VpaK11BI	GGWCC	2 cut(s)	472, 974
XapI	RAATTY	5 cut(s)	343, 572, 609, 832, 929
XceI	RCATGY	1 cut(s)	856
XcmI	CCANNNNNNNNNTGG	1 cut(s)	586
XmiI	GTMKAC	1 cut(s)	99
XmnI	GAANNNNTTC	1 cut(s)	1044
XspI	CTAG	3 cut(s)	399, 770, 872
ZraI	GACGTC	2 cut(s)	24, 97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.