Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0003862

Physical Location & Seq

Genomic Coordinates Forward (+)

1848630 .. 1849942

Gene Structure 1313 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGTCGGTTAGGTCGTTATCCATCAGCCCCCAATTTACCGCCAAAAGGTACAAATCTCAAATCCCTCCGTTCTTTTCTTCCAATCCGCGTCGCATTTTGTGTTTTTACATTTTGTTTTGCAGTCGAAGCTCGCCGGCTGGCGAAATCGGAGCAAGCCCTGGCTGCGCAGTCCTCAACTTCTCGAATTTGCAGAGAGGTCCCTCAAGAAGTAGAAATTTGAGTTTGAGGTTGTGTATGGGTAGCGGCAATGGAGGATTCGGACAGAACCCTCATGGGGTCGGCGACAAAGATGGCGTCATCATCGTCGACCATGGTTCGCGCCGCAAGGAATCAAATCTCATGTTAAATGAGTTCGTGAGCATGTTTAGAGAGAGAACTGGGTACCCAATTGTGGAGCCTGCTCATATGGAGTTGGCGGAACCATCAATTCGGGATGCATTCAATTCGTGTGTTGAACAAGGGGCTGATCGTGTAATTCTGAGCCCGTTCTTCCTCTTACCGGGAAGACATTGGAACCAGGACATTCCATCCCTGACAGCTGAAGCTGCAAAGGAGCATCCTGGTGTCTCGTATATAGTAACTGCACCCCTCGGCCTCCATCCGCTACTTGTGGATGTTACGAATGATAGGATCAATCACTGCTTAAGCCGTGTTGCTGGAGATGCAGAGGAGTGCGCCGTTTGTGCTGGAACAAACAAATGTCAGCTCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004325 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0016829 GO:0018130 GO:0019354 GO:0019438 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042440 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046156 GO:0046483 GO:0048037 GO:0050896 GO:0051186 GO:0051188 GO:0051266 GO:0051536 GO:0051540 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

CbiX

Protein Analysis

238

Amino Acids

25.9

Weight (kDa)

8.4

Isoelectric Point (pI)

53.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CbiX	PF01903	104 - 207	2.3e-31	CbiX

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003862)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50170 AT1G50170 AT1G50170
fragaria_vesca	FvH4_3g28470 FvH4_3g28470 FvH4_6g51400
malus_domestica	MD09G1028700.v1.1 MD17G1030300.v1.1
prunus_persica	Prupe.3G207400_v2.0.a1 Prupe.3G289500_v2.0.a1 Prupe.3G289500_v2.0.a1 Prupe.3G289500_v2.0.a1 Prupe.3G289500_v2.0.a1 Prupe.3G289500_v2.0.a1 Prupe.3G289700_v2.0.a1
pyrus_communis	pycom111g02280 pycom17g02770
rosa_chinensis	RchiOBHm_Chr1g0351301 RchiOBHm_Chr2g0173081 RchiOBHm_Chr7g0219921 RchiOBHm_Chr7g0228061 RchiOBHm_Chr7g0228091
rosa_laevigata	RLG00000022156
rosa_multiflora	Rmu_sc0011236.1_g000008 Rmu_sc0031614.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079260
rosa_rugosa	Rorug02G0565000
rosa_samantha	Rh2AG644900 Rh2BG655700 Rh2CG620800 Rh2DG669000 Rh7DG395300
rosa_wichuraiana	Rw2G052970 Rw7G033220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	166
Acc65I	GGTACC	1 cut(s)	381
AccB1I	GGYRCC	1 cut(s)	381
AccI	GTMKAC	1 cut(s)	306
AccII	CGCG	2 cut(s)	88, 319
AciI	CCGC	6 cut(s)	39, 86, 243, 322, 416, 602
AclWI	GGATC	1 cut(s)	638
AcsI	RAATTY	2 cut(s)	184, 214
AcuI	CTGAAG	1 cut(s)	561
AcyI	GRCGYC	1 cut(s)	294
AfaI	GTAC	2 cut(s)	50, 383
AfiI	CCNNNNNNNGG	4 cut(s)	45, 274, 391, 499
AflII	CTTAAG	1 cut(s)	643
AgsI	TTSAA	2 cut(s)	442, 455
AjnI	CCWGG	3 cut(s)	157, 516, 559
AluBI	AGCT	4 cut(s)	129, 539, 545, 706
AluI	AGCT	4 cut(s)	129, 539, 545, 706
Alw26I	GTCTC	1 cut(s)	571
AlwI	GGATC	1 cut(s)	638
AoxI	GGCC	1 cut(s)	592
ApeKI	GCWGC	2 cut(s)	162, 545
ApoI	RAATTY	2 cut(s)	184, 214
ArsI	GACNNNNNNTTYG	2 cut(s)	279, 311
Asp718I	GGTACC	1 cut(s)	381
AspLEI	GCGC	3 cut(s)	167, 321, 677
AspS9I	GGNCC	1 cut(s)	197
AsuC2I	CCSGG	1 cut(s)	501
AvaII	GGWCC	1 cut(s)	197
BanI	GGYRCC	1 cut(s)	381
BanII	GRGCYC	1 cut(s)	485
BbsI	GAAGAC	1 cut(s)	511
BbvI	GCAGC	2 cut(s)	149, 532
BccI	CCATC	5 cut(s)	29, 284, 430, 535, 606
BceAI	ACGGC	2 cut(s)	633, 662
BcgI	CGANNNNNNTGC	2 cut(s)	426, 460
BciT130I	CCWGG	3 cut(s)	159, 518, 561
BcnI	CCSGG	1 cut(s)	501
BcoDI	GTCTC	1 cut(s)	571
BfrI	CTTAAG	1 cut(s)	643
BisI	GCNGC	4 cut(s)	163, 244, 322, 546
BlsI	GCNGC	4 cut(s)	164, 245, 323, 547
Bme1390I	CCNGG	4 cut(s)	159, 501, 518, 561
Bme18I	GGWCC	1 cut(s)	197
BmgT120I	GGNCC	1 cut(s)	197
BmiI	GGNNCC	5 cut(s)	199, 383, 396, 420, 515
BmrFI	CCNGG	4 cut(s)	159, 501, 518, 561
BmrI	ACTGGG	1 cut(s)	387
BmsI	GCATC	3 cut(s)	424, 565, 652
BmuI	ACTGGG	1 cut(s)	387
BpiI	GAAGAC	1 cut(s)	511
BpmI	CTGGAG	1 cut(s)	678
BpuEI	CTTGAG	1 cut(s)	187
BpuMI	CCSGG	1 cut(s)	501
BsaHI	GRCGYC	1 cut(s)	294
BsaJI	CCNNGG	3 cut(s)	157, 310, 589
Bsc4I	CCNNNNNNNGG	4 cut(s)	45, 274, 391, 499
Bse118I	RCCGGY	1 cut(s)	133
Bse1I	ACTGG	1 cut(s)	382
Bse3DI	GCAATG	1 cut(s)	253
BseBI	CCWGG	3 cut(s)	159, 518, 561
BseDI	CCNNGG	3 cut(s)	157, 310, 589
BseGI	GGATG	5 cut(s)	439, 527, 556, 598, 619
BseLI	CCNNNNNNNGG	4 cut(s)	45, 274, 391, 499
BseMI	GCAATG	1 cut(s)	253
BseMII	CTCAG	1 cut(s)	470
BseNI	ACTGG	1 cut(s)	382
BseRI	GAGGAG	1 cut(s)	683
BseXI	GCAGC	2 cut(s)	149, 532
BsgI	GTGCAG	1 cut(s)	567
Bsh1236I	CGCG	2 cut(s)	88, 319
BshFI	GGCC	1 cut(s)	594
BshNI	GGYRCC	1 cut(s)	381
BsiSI	CCGG	2 cut(s)	134, 500
BslFI	GGGAC	1 cut(s)	183
BslI	CCNNNNNNNGG	4 cut(s)	45, 274, 391, 499
BsmAI	GTCTC	1 cut(s)	571
BsmFI	GGGAC	1 cut(s)	183
BsmI	GAATGC	1 cut(s)	437
BsnI	GGCC	1 cut(s)	594
Bsp1286I	GDGCHC	1 cut(s)	485
Bsp143I	GATC	2 cut(s)	466, 630
Bsp19I	CCATGG	1 cut(s)	310
BspACI	CCGC	6 cut(s)	39, 86, 243, 322, 416, 602
BspANI	GGCC	1 cut(s)	594
BspCNI	CTCAG	1 cut(s)	471
BspFNI	CGCG	2 cut(s)	88, 319
BspLI	GGNNCC	5 cut(s)	199, 383, 396, 420, 515
BspPI	GGATC	1 cut(s)	638
BspT107I	GGYRCC	1 cut(s)	381
BspTI	CTTAAG	1 cut(s)	643
BsrDI	GCAATG	1 cut(s)	253
BsrFI	RCCGGY	1 cut(s)	133
BsrI	ACTGG	1 cut(s)	382
BssAI	RCCGGY	1 cut(s)	133
BssECI	CCNNGG	3 cut(s)	157, 310, 589
BssMI	GATC	2 cut(s)	466, 630
BssNI	GRCGYC	1 cut(s)	294
BssT1I	CCWWGG	1 cut(s)	310
Bst2UI	CCWGG	3 cut(s)	159, 518, 561
BstACI	GRCGYC	1 cut(s)	294
BstAFI	CTTAAG	1 cut(s)	643
BstC8I	GCNNGC	5 cut(s)	131, 135, 139, 154, 399
BstDEI	CTNAG	1 cut(s)	479
BstDSI	CCRYGG	1 cut(s)	310
BstF5I	GGATG	5 cut(s)	439, 527, 556, 598, 619
BstFNI	CGCG	2 cut(s)	88, 319
BstHHI	GCGC	3 cut(s)	167, 321, 677
BstKTI	GATC	2 cut(s)	469, 633
BstMAI	GTCTC	1 cut(s)	571
BstMBI	GATC	2 cut(s)	466, 630
BstMWI	GCNNNNNNNGC	5 cut(s)	126, 162, 545, 662, 683
BstNI	CCWGG	3 cut(s)	159, 518, 561
BstNSI	RCATGY	1 cut(s)	364
BstSCI	CCNGG	4 cut(s)	157, 499, 516, 559
BstUI	CGCG	2 cut(s)	88, 319
BstV1I	GCAGC	2 cut(s)	149, 532
BstV2I	GAAGAC	1 cut(s)	511
BsuRI	GGCC	1 cut(s)	594
BtgI	CCRYGG	1 cut(s)	310
BtsCI	GGATG	5 cut(s)	439, 527, 556, 598, 619
BtsI	GCAGTG	1 cut(s)	637
BtsIMutI	CAGTG	1 cut(s)	637
Cac8I	GCNNGC	5 cut(s)	131, 135, 139, 154, 399
CfoI	GCGC	3 cut(s)	167, 321, 677
Cfr10I	RCCGGY	1 cut(s)	133
Cfr13I	GGNCC	1 cut(s)	197
CseI	GACGC	2 cut(s)	77, 283
Csp6I	GTAC	2 cut(s)	49, 382
CviAII	CATG	4 cut(s)	272, 311, 340, 361
CviQI	GTAC	2 cut(s)	49, 382
DdeI	CTNAG	1 cut(s)	479
DpnI	GATC	2 cut(s)	468, 632
DpnII	GATC	2 cut(s)	466, 630
EciI	GGCGGA	1 cut(s)	431
Eco130I	CCWWGG	1 cut(s)	310
Eco24I	GRGCYC	1 cut(s)	485
Eco47I	GGWCC	1 cut(s)	197
Eco57I	CTGAAG	1 cut(s)	561
EcoO109I	RGGNCCY	1 cut(s)	197
EcoRII	CCWGG	3 cut(s)	157, 516, 559
EcoT14I	CCWWGG	1 cut(s)	310
EcoT22I	ATGCAT	1 cut(s)	439
EcoT38I	GRGCYC	1 cut(s)	485
ErhI	CCWWGG	1 cut(s)	310
FaeI	CATG	4 cut(s)	275, 314, 343, 364
FaiI	YATR	9 cut(s)	236, 273, 312, 341, 362, 405, 407, 573, 575
FaqI	GGGAC	1 cut(s)	183
FatI	CATG	4 cut(s)	271, 310, 339, 360
FauNDI	CATATG	1 cut(s)	405
FblI	GTMKAC	1 cut(s)	306
Fnu4HI	GCNGC	4 cut(s)	163, 244, 322, 546
FokI	GGATG	5 cut(s)	446, 514, 543, 585, 626
FriOI	GRGCYC	1 cut(s)	485
Fsp4HI	GCNGC	4 cut(s)	163, 244, 322, 546
FspI	TGCGCA	1 cut(s)	166
GlaI	GCGC	3 cut(s)	166, 320, 676
GluI	GCNGC	4 cut(s)	163, 244, 322, 546
GsuI	CTGGAG	1 cut(s)	678
HaeIII	GGCC	1 cut(s)	594
HapII	CCGG	2 cut(s)	134, 500
HgaI	GACGC	2 cut(s)	77, 283
HhaI	GCGC	3 cut(s)	167, 321, 677
Hin1I	GRCGYC	1 cut(s)	294
Hin1II	CATG	4 cut(s)	275, 314, 343, 364
Hin6I	GCGC	3 cut(s)	165, 319, 675
HinP1I	GCGC	3 cut(s)	165, 319, 675
HincII	GTYRAC	1 cut(s)	307
HindII	GTYRAC	1 cut(s)	307
HinfI	GANTC	2 cut(s)	255, 329
HpaII	CCGG	2 cut(s)	134, 500
Hpy166II	GTNNAC	1 cut(s)	307
Hpy188I	TCNGA	3 cut(s)	149, 260, 480
Hpy188III	TCNNGA	4 cut(s)	181, 204, 355, 431
Hpy8I	GTNNAC	1 cut(s)	307
Hpy99I	CGWCG	2 cut(s)	93, 308
HpyCH4V	TGCA	6 cut(s)	120, 190, 437, 548, 584, 665
HpyF10VI	GCNNNNNNNGC	5 cut(s)	126, 162, 545, 662, 683
HpyF3I	CTNAG	1 cut(s)	479
Hsp92I	GRCGYC	1 cut(s)	294
Hsp92II	CATG	4 cut(s)	275, 314, 343, 364
HspAI	GCGC	3 cut(s)	165, 319, 675
KpnI	GGTACC	1 cut(s)	385
KroI	GCCGGC	1 cut(s)	133
KroNI	GCCGGC	1 cut(s)	135
Kzo9I	GATC	2 cut(s)	466, 630
LmnI	GCTCC	4 cut(s)	149, 394, 553, 711
Lsp1109I	GCAGC	2 cut(s)	149, 532
LweI	GCATC	3 cut(s)	424, 565, 652
MaeIII	GTNAC	2 cut(s)	577, 616
MalI	GATC	2 cut(s)	468, 632
MboI	GATC	2 cut(s)	466, 630
MboII	GAAGA	3 cut(s)	69, 481, 516
MfeI	CAATTG	1 cut(s)	387
MhlI	GDGCHC	1 cut(s)	485
MluCI	AATT	7 cut(s)	32, 184, 214, 387, 426, 442, 474
Mph1103I	ATGCAT	1 cut(s)	439
MroNI	GCCGGC	1 cut(s)	133
MseI	TTAA	2 cut(s)	344, 644
MslI	CAYNNNNRTG	1 cut(s)	561
MspA1I	CMGCKG	1 cut(s)	539
MspCI	CTTAAG	1 cut(s)	643
MspI	CCGG	2 cut(s)	134, 500
MspR9I	CCNGG	4 cut(s)	159, 501, 518, 561
MunI	CAATTG	1 cut(s)	387
Mva1269I	GAATGC	1 cut(s)	437
MvaI	CCWGG	3 cut(s)	159, 518, 561
MvnI	CGCG	2 cut(s)	88, 319
MwoI	GCNNNNNNNGC	5 cut(s)	126, 162, 545, 662, 683
NaeI	GCCGGC	1 cut(s)	135
NciI	CCSGG	1 cut(s)	501
NcoI	CCATGG	1 cut(s)	310
NdeI	CATATG	1 cut(s)	405
NdeII	GATC	2 cut(s)	466, 630
NgoMIV	GCCGGC	1 cut(s)	133
NlaIII	CATG	4 cut(s)	275, 314, 343, 364
NlaIV	GGNNCC	5 cut(s)	199, 383, 396, 420, 515
NmeAIII	GCCGAG	1 cut(s)	570
NsbI	TGCGCA	1 cut(s)	166
NsiI	ATGCAT	1 cut(s)	439
NspI	RCATGY	1 cut(s)	364
PcsI	WCGNNNNNNNCGW	1 cut(s)	11
PctI	GAATGC	1 cut(s)	437
PdiI	GCCGGC	1 cut(s)	135
PfeI	GAWTC	2 cut(s)	255, 329
PkrI	GCNGC	4 cut(s)	164, 245, 323, 547
PpuMI	RGGWCCY	1 cut(s)	197
Psp5II	RGGWCCY	1 cut(s)	197
Psp6I	CCWGG	3 cut(s)	157, 516, 559
PspGI	CCWGG	3 cut(s)	157, 516, 559
PspN4I	GGNNCC	5 cut(s)	199, 383, 396, 420, 515
PspPI	GGNCC	1 cut(s)	197
PspPPI	RGGWCCY	1 cut(s)	197
PvuII	CAGCTG	1 cut(s)	539
RsaI	GTAC	2 cut(s)	50, 383
RsaNI	GTAC	2 cut(s)	49, 382
RseI	CAYNNNNRTG	1 cut(s)	561
SalI	GTCGAC	1 cut(s)	305
SaqAI	TTAA	2 cut(s)	344, 644
SatI	GCNGC	4 cut(s)	163, 244, 322, 546
Sau3AI	GATC	2 cut(s)	466, 630
Sau96I	GGNCC	1 cut(s)	197
ScrFI	CCNGG	4 cut(s)	159, 501, 518, 561
SduI	GDGCHC	1 cut(s)	485
SetI	ASST	8 cut(s)	14, 50, 131, 199, 230, 541, 547, 708
SfaNI	GCATC	3 cut(s)	424, 565, 652
SinI	GGWCC	1 cut(s)	197
SmiMI	CAYNNNNRTG	1 cut(s)	561
SmlI	CTYRAG	2 cut(s)	202, 643
SmoI	CTYRAG	2 cut(s)	202, 643
Sse9I	AATT	7 cut(s)	32, 184, 214, 387, 426, 442, 474
SsiI	CCGC	6 cut(s)	39, 86, 243, 322, 416, 602
StyD4I	CCNGG	4 cut(s)	157, 499, 516, 559
StyI	CCWWGG	1 cut(s)	310
TaqI	TCGA	3 cut(s)	124, 182, 306
TasI	AATT	7 cut(s)	32, 184, 214, 387, 426, 442, 474
TauI	GCSGC	2 cut(s)	246, 324
TfiI	GAWTC	2 cut(s)	255, 329
Tru1I	TTAA	2 cut(s)	344, 644
Tru9I	TTAA	2 cut(s)	344, 644
TscAI	CASTG	1 cut(s)	644
TseI	GCWGC	2 cut(s)	162, 545
TspGWI	ACGGA	1 cut(s)	57
TspRI	CASTG	1 cut(s)	644
Vha464I	CTTAAG	1 cut(s)	643
VpaK11BI	GGWCC	1 cut(s)	197
XapI	RAATTY	2 cut(s)	184, 214
XceI	RCATGY	1 cut(s)	364
XmiI	GTMKAC	1 cut(s)	306
Zsp2I	ATGCAT	1 cut(s)	439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.