Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0005371

Physical Location & Seq

Genomic Coordinates Reverse (-)

1961935 .. 1963998

Gene Structure 2064 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGAATAAACTGCTTTCAAAAGCATTTCCGCCCAACGGGCCACAAGACACACACTGCTTCTTTGCGCGCTCTCCGCAGTCGTTTCCGTTTTACTGTGTGGGCAGCATGGCTTGTGCTGCTTCGCTCCACCCACTGTCTTCTTCCTCCCGTGCTCTCTTTCCAACTCTCTGCCGCCGGTCAACCTTTCCCGCCATCTTCCACCGGCTCAGGGGTTTCTCCCCAACCAGCCCCCTAGTATCCACCGTGAACCGGCTGATCCCGGTCCGCGCACAGGCGAGGCGAGGCTTCTCAGTCAAAGAAGATGAAGTGGCCTCCGCTGCTGATGTGGAATTTCAAACCCCTCTGAGAATTGTGGAGTATCCGGACCCGTTTCTGAGAGCGAAGAACAAGCGAATCGATTCTTTCGACGATCATTTGAAGAATTTGGTAGATGAAATGTTTGATGTAATGTACAAAACTGATGGGATAGGGCTCTCGGCGCCCCAAGTAGGGATCAATGTGCAGCTCATGGTGTTTAATCCGGTTGTTGATTGTGGCGAAGGGGAGGAAATTGTGCTTGTGAATCCAAGGGTTACCAGATATTCCCAGAAAACGCGACCCTTTAACGAGGGTTGCTTATCCTTCCCGGGAATTTATGCTGATGTTGTGAGACCAGAAACTGTGAAAATAGATGCACAGGATATTAAAGGTGTGAGGTTTACAGTCAGCTTGTCAGGTCTTCCAGCACGGGTGTTCCAGCATGAATATGATCGATTTGCAGGGTGTTCTCTTCTTCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016787 GO:0016810 GO:0016811 GO:0018193 GO:0018206 GO:0019538 GO:0031365 GO:0036211 GO:0042586 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043686 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pep_deformylase

Protein Analysis

260

Amino Acids

28.92

Weight (kDa)

8.86

Isoelectric Point (pI)

52.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pep_deformylase	PF01327	115 - 255	1.8e-43	Polypeptide deformylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005371)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14660 AT5G14660 AT5G14660
fragaria_vesca	FvH4_6g50950 FvH4_6g50950 FvH4_6g50950 FvH4_6g50950 FvH4_6g50950
malus_domestica	MD09G1030300.v1.1 MD17G1032100.v1.1
prunus_persica	Prupe.3G287100_v2.0.a1
pyrus_communis	pycom111g02430 pycom17g02970
rosa_chinensis	RchiOBHm_Chr2g0172351
rosa_laevigata	RLG00000022106
rosa_multiflora	Rmu_sc0000467.1_g000010 Rmu_sc0004498.1_g000002
rosa_roxburghii	Rroxscaffold_2G00079960 Rroxscaffold_2G00115080 Rroxscaffold_5G00361130
rosa_rugosa	Rorug02G0558700
rosa_samantha	Rh2BG647500 Rh2CG614400 Rh2DG585500 Rh2DG662300 Rh4BG378100 Rh4CG024900 Rh4CG392200
rosa_wichuraiana	Rw2G052490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	478
AccII	CGCG	3 cut(s)	67, 267, 595
AccIII	TCCGGA	1 cut(s)	361
AciI	CCGC	6 cut(s)	29, 74, 172, 189, 265, 315
AclWI	GGATC	2 cut(s)	250, 500
AcsI	RAATTY	3 cut(s)	329, 421, 630
AcyI	GRCGYC	1 cut(s)	479
AfaI	GTAC	1 cut(s)	452
AfiI	CCNNNNNNNGG	6 cut(s)	35, 208, 249, 271, 488, 489
AgsI	TTSAA	3 cut(s)	18, 335, 418
AluBI	AGCT	2 cut(s)	505, 708
AluI	AGCT	2 cut(s)	505, 708
Alw21I	GWGCWC	1 cut(s)	154
Alw26I	GTCTC	1 cut(s)	643
AlwI	GGATC	2 cut(s)	250, 500
AlwNI	CAGNNNCTG	1 cut(s)	659
Ama87I	CYCGRG	1 cut(s)	625
Aor13HI	TCCGGA	1 cut(s)	361
AoxI	GGCC	2 cut(s)	38, 309
ApeKI	GCWGC	4 cut(s)	102, 116, 317, 502
ApoI	RAATTY	3 cut(s)	329, 421, 630
Asp700I	GAANNNNTTC	1 cut(s)	397
AspLEI	GCGC	4 cut(s)	67, 69, 269, 481
AspS9I	GGNCC	3 cut(s)	38, 262, 364
AsuC2I	CCSGG	3 cut(s)	260, 626, 627
AvaI	CYCGRG	1 cut(s)	625
AvaII	GGWCC	2 cut(s)	262, 364
BanI	GGYRCC	1 cut(s)	478
BanII	GRGCYC	1 cut(s)	474
BbsI	GAAGAC	2 cut(s)	129, 710
Bbv12I	GWGCWC	1 cut(s)	154
BbvI	GCAGC	4 cut(s)	103, 114, 304, 514
BccI	CCATC	2 cut(s)	200, 455
BciVI	GTATCC	2 cut(s)	247, 369
BcnI	CCSGG	3 cut(s)	260, 626, 627
BcoDI	GTCTC	1 cut(s)	643
BfaI	CTAG	1 cut(s)	233
BfoI	RGCGCY	1 cut(s)	482
BfuI	GTATCC	2 cut(s)	247, 369
BglI	GCCNNNNNGGC	1 cut(s)	37
BisI	GCNGC	5 cut(s)	103, 117, 172, 318, 503
BlsI	GCNGC	5 cut(s)	104, 118, 173, 319, 504
Bme1390I	CCNGG	3 cut(s)	260, 626, 627
Bme18I	GGWCC	2 cut(s)	262, 364
BmeT110I	CYCGRG	1 cut(s)	625
BmgT120I	GGNCC	3 cut(s)	38, 262, 364
BmiI	GGNNCC	2 cut(s)	366, 480
BmrFI	CCNGG	3 cut(s)	260, 626, 627
BmsI	GCATC	1 cut(s)	661
BpiI	GAAGAC	2 cut(s)	129, 710
Bpu10I	CCTNAGC	1 cut(s)	206
BpuMI	CCSGG	3 cut(s)	260, 626, 627
Bsa29I	ATCGAT	2 cut(s)	396, 751
BsaHI	GRCGYC	1 cut(s)	479
BsaI	GGTCTC	1 cut(s)	643
BsaJI	CCNNGG	2 cut(s)	566, 625
BsaWI	WCCGGW	2 cut(s)	361, 520
Bsc4I	CCNNNNNNNGG	6 cut(s)	35, 208, 249, 271, 488, 489
Bse118I	RCCGGY	3 cut(s)	174, 201, 249
BseAI	TCCGGA	1 cut(s)	361
BseCI	ATCGAT	2 cut(s)	396, 751
BseDI	CCNNGG	2 cut(s)	566, 625
BseLI	CCNNNNNNNGG	6 cut(s)	35, 208, 249, 271, 488, 489
BseMII	CTCAG	4 cut(s)	220, 303, 335, 365
BsePI	GCGCGC	1 cut(s)	65
BseXI	GCAGC	4 cut(s)	103, 114, 304, 514
BsgI	GTGCAG	1 cut(s)	521
Bsh1236I	CGCG	3 cut(s)	67, 267, 595
BshFI	GGCC	2 cut(s)	40, 311
BshNI	GGYRCC	1 cut(s)	478
BshVI	ATCGAT	2 cut(s)	396, 751
BsiHKAI	GWGCWC	1 cut(s)	154
BsiHKCI	CYCGRG	1 cut(s)	625
BsiSI	CCGG	7 cut(s)	175, 202, 250, 260, 362, 521, 626
BslI	CCNNNNNNNGG	6 cut(s)	35, 208, 249, 271, 488, 489
BsmAI	GTCTC	1 cut(s)	643
BsnI	GGCC	2 cut(s)	40, 311
Bso31I	GGTCTC	1 cut(s)	643
BsoBI	CYCGRG	1 cut(s)	625
Bsp1286I	GDGCHC	2 cut(s)	154, 474
Bsp13I	TCCGGA	1 cut(s)	361
Bsp1407I	TGTACA	1 cut(s)	450
Bsp143I	GATC	4 cut(s)	255, 409, 492, 748
BspACI	CCGC	6 cut(s)	29, 74, 172, 189, 265, 315
BspANI	GGCC	2 cut(s)	40, 311
BspCNI	CTCAG	4 cut(s)	219, 302, 336, 366
BspDI	ATCGAT	2 cut(s)	396, 751
BspEI	TCCGGA	1 cut(s)	361
BspFNI	CGCG	3 cut(s)	67, 267, 595
BspLI	GGNNCC	2 cut(s)	366, 480
BspPI	GGATC	2 cut(s)	250, 500
BspT107I	GGYRCC	1 cut(s)	478
BspTNI	GGTCTC	1 cut(s)	643
BsrFI	RCCGGY	3 cut(s)	174, 201, 249
BsrGI	TGTACA	1 cut(s)	450
BssAI	RCCGGY	3 cut(s)	174, 201, 249
BssECI	CCNNGG	2 cut(s)	566, 625
BssHII	GCGCGC	1 cut(s)	65
BssMI	GATC	4 cut(s)	255, 409, 492, 748
BssNI	GRCGYC	1 cut(s)	479
BssT1I	CCWWGG	1 cut(s)	566
Bst4CI	ACNGT	5 cut(s)	95, 135, 244, 661, 703
Bst6I	CTCTTC	1 cut(s)	774
BstACI	GRCGYC	1 cut(s)	479
BstAUI	TGTACA	1 cut(s)	450
BstC8I	GCNNGC	1 cut(s)	67
BstDEI	CTNAG	4 cut(s)	206, 289, 344, 374
BstEII	GGTNACC	1 cut(s)	571
BstFNI	CGCG	3 cut(s)	67, 267, 595
BstH2I	RGCGCY	1 cut(s)	482
BstHHI	GCGC	4 cut(s)	67, 69, 269, 481
BstKTI	GATC	4 cut(s)	258, 412, 495, 751
BstMAI	GTCTC	1 cut(s)	643
BstMBI	GATC	4 cut(s)	255, 409, 492, 748
BstMWI	GCNNNNNNNGC	5 cut(s)	37, 73, 116, 317, 478
BstPI	GGTNACC	1 cut(s)	571
BstSCI	CCNGG	3 cut(s)	258, 624, 625
BstUI	CGCG	3 cut(s)	67, 267, 595
BstV1I	GCAGC	4 cut(s)	103, 114, 304, 514
BstV2I	GAAGAC	2 cut(s)	129, 710
Bsu15I	ATCGAT	2 cut(s)	396, 751
BsuI	GTATCC	2 cut(s)	247, 369
BsuRI	GGCC	2 cut(s)	40, 311
BsuTUI	ATCGAT	2 cut(s)	396, 751
BtsI	GCAGTG	1 cut(s)	52
BtsIMutI	CAGTG	2 cut(s)	52, 131
Cac8I	GCNNGC	1 cut(s)	67
CaiI	CAGNNNCTG	1 cut(s)	659
CfoI	GCGC	4 cut(s)	67, 69, 269, 481
Cfr10I	RCCGGY	3 cut(s)	174, 201, 249
Cfr13I	GGNCC	3 cut(s)	38, 262, 364
Cfr9I	CCCGGG	1 cut(s)	625
ClaI	ATCGAT	2 cut(s)	396, 751
CpoI	CGGWCCG	1 cut(s)	262
Csp6I	GTAC	1 cut(s)	451
CspI	CGGWCCG	1 cut(s)	262
CviAII	CATG	3 cut(s)	106, 508, 740
CviQI	GTAC	1 cut(s)	451
DdeI	CTNAG	4 cut(s)	206, 289, 344, 374
DinI	GGCGCC	1 cut(s)	480
DpnI	GATC	4 cut(s)	257, 411, 494, 750
DpnII	GATC	4 cut(s)	255, 409, 492, 748
Eam1104I	CTCTTC	1 cut(s)	774
EarI	CTCTTC	1 cut(s)	774
EciI	GGCGGA	1 cut(s)	18
Eco130I	CCWWGG	1 cut(s)	566
Eco24I	GRGCYC	1 cut(s)	474
Eco31I	GGTCTC	1 cut(s)	643
Eco47I	GGWCC	2 cut(s)	262, 364
Eco88I	CYCGRG	1 cut(s)	625
Eco91I	GGTNACC	1 cut(s)	571
EcoO65I	GGTNACC	1 cut(s)	571
EcoT14I	CCWWGG	1 cut(s)	566
EcoT38I	GRGCYC	1 cut(s)	474
EgeI	GGCGCC	1 cut(s)	480
EheI	GGCGCC	1 cut(s)	480
ErhI	CCWWGG	1 cut(s)	566
FaeI	CATG	3 cut(s)	109, 511, 743
FaiI	YATR	5 cut(s)	107, 509, 636, 741, 747
FatI	CATG	3 cut(s)	105, 507, 739
FauI	CCCGC	1 cut(s)	196
Fnu4HI	GCNGC	5 cut(s)	103, 117, 172, 318, 503
FriOI	GRGCYC	1 cut(s)	474
Fsp4HI	GCNGC	5 cut(s)	103, 117, 172, 318, 503
FspBI	CTAG	1 cut(s)	233
GlaI	GCGC	4 cut(s)	66, 68, 268, 480
GluI	GCNGC	5 cut(s)	103, 117, 172, 318, 503
HaeII	RGCGCY	1 cut(s)	482
HaeIII	GGCC	2 cut(s)	40, 311
HapII	CCGG	7 cut(s)	175, 202, 250, 260, 362, 521, 626
HhaI	GCGC	4 cut(s)	67, 69, 269, 481
Hin1I	GRCGYC	1 cut(s)	479
Hin1II	CATG	3 cut(s)	109, 511, 743
Hin6I	GCGC	4 cut(s)	65, 67, 267, 479
HinP1I	GCGC	4 cut(s)	65, 67, 267, 479
HincII	GTYRAC	1 cut(s)	180
HindII	GTYRAC	1 cut(s)	180
HinfI	GANTC	3 cut(s)	393, 398, 562
HpaII	CCGG	7 cut(s)	175, 202, 250, 260, 362, 521, 626
Hpy166II	GTNNAC	3 cut(s)	180, 247, 699
Hpy188I	TCNGA	2 cut(s)	345, 375
Hpy188III	TCNNGA	1 cut(s)	362
Hpy8I	GTNNAC	3 cut(s)	180, 247, 699
Hpy99I	CGWCG	1 cut(s)	410
HpyAV	CCTTC	2 cut(s)	533, 631
HpyCH4III	ACNGT	5 cut(s)	95, 135, 244, 661, 703
HpyCH4V	TGCA	3 cut(s)	502, 674, 758
HpyF10VI	GCNNNNNNNGC	5 cut(s)	37, 73, 116, 317, 478
HpyF3I	CTNAG	4 cut(s)	206, 289, 344, 374
Hsp92I	GRCGYC	1 cut(s)	479
Hsp92II	CATG	3 cut(s)	109, 511, 743
HspAI	GCGC	4 cut(s)	65, 67, 267, 479
KasI	GGCGCC	1 cut(s)	478
Kpn2I	TCCGGA	1 cut(s)	361
Kzo9I	GATC	4 cut(s)	255, 409, 492, 748
LmnI	GCTCC	1 cut(s)	129
Lsp1109I	GCAGC	4 cut(s)	103, 114, 304, 514
LweI	GCATC	1 cut(s)	661
MaeI	CTAG	1 cut(s)	233
MaeIII	GTNAC	1 cut(s)	571
MalI	GATC	4 cut(s)	257, 411, 494, 750
MboI	GATC	4 cut(s)	255, 409, 492, 748
MboII	GAAGA	9 cut(s)	129, 132, 187, 311, 394, 430, 710, 761, 764
MhlI	GDGCHC	2 cut(s)	154, 474
MluCI	AATT	5 cut(s)	329, 348, 421, 549, 630
Mly113I	GGCGCC	1 cut(s)	479
MmeI	TCCRAC	1 cut(s)	185
MnlI	CCTC	8 cut(s)	154, 270, 275, 322, 351, 538, 601, 687
MroI	TCCGGA	1 cut(s)	361
MroXI	GAANNNNTTC	1 cut(s)	397
MseI	TTAA	3 cut(s)	516, 603, 684
MslI	CAYNNNNRTG	1 cut(s)	744
MspA1I	CMGCKG	1 cut(s)	317
MspI	CCGG	7 cut(s)	175, 202, 250, 260, 362, 521, 626
MspR9I	CCNGG	3 cut(s)	260, 626, 627
MvnI	CGCG	3 cut(s)	67, 267, 595
MwoI	GCNNNNNNNGC	5 cut(s)	37, 73, 116, 317, 478
NarI	GGCGCC	1 cut(s)	479
NciI	CCSGG	3 cut(s)	260, 626, 627
NdeII	GATC	4 cut(s)	255, 409, 492, 748
NlaIII	CATG	3 cut(s)	109, 511, 743
NlaIV	GGNNCC	2 cut(s)	366, 480
NmeAIII	GCCGAG	1 cut(s)	455
PauI	GCGCGC	1 cut(s)	65
PcsI	WCGNNNNNNNCGW	1 cut(s)	402
PdmI	GAANNNNTTC	1 cut(s)	397
PfeI	GAWTC	3 cut(s)	393, 398, 562
PkrI	GCNGC	5 cut(s)	104, 118, 173, 319, 504
PluTI	GGCGCC	1 cut(s)	482
PspEI	GGTNACC	1 cut(s)	571
PspN4I	GGNNCC	2 cut(s)	366, 480
PspPI	GGNCC	3 cut(s)	38, 262, 364
PstNI	CAGNNNCTG	1 cut(s)	659
PteI	GCGCGC	1 cut(s)	65
RsaI	GTAC	1 cut(s)	452
RsaNI	GTAC	1 cut(s)	451
RseI	CAYNNNNRTG	1 cut(s)	744
Rsr2I	CGGWCCG	1 cut(s)	262
RsrII	CGGWCCG	1 cut(s)	262
SaqAI	TTAA	3 cut(s)	516, 603, 684
SatI	GCNGC	5 cut(s)	103, 117, 172, 318, 503
Sau3AI	GATC	4 cut(s)	255, 409, 492, 748
Sau96I	GGNCC	3 cut(s)	38, 262, 364
ScrFI	CCNGG	3 cut(s)	260, 626, 627
SduI	GDGCHC	2 cut(s)	154, 474
SetI	ASST	6 cut(s)	185, 507, 691, 698, 710, 718
SfaNI	GCATC	1 cut(s)	661
SfoI	GGCGCC	1 cut(s)	480
SinI	GGWCC	2 cut(s)	262, 364
SmaI	CCCGGG	1 cut(s)	627
SmiMI	CAYNNNNRTG	1 cut(s)	744
Sse9I	AATT	5 cut(s)	329, 348, 421, 549, 630
SsiI	CCGC	6 cut(s)	29, 74, 172, 189, 265, 315
SspDI	GGCGCC	1 cut(s)	478
SspMI	CTAG	1 cut(s)	233
StyD4I	CCNGG	3 cut(s)	258, 624, 625
StyI	CCWWGG	1 cut(s)	566
TaaI	ACNGT	5 cut(s)	95, 135, 244, 661, 703
TaqI	TCGA	4 cut(s)	396, 405, 751, 775
TasI	AATT	5 cut(s)	329, 348, 421, 549, 630
TatI	WGTACW	1 cut(s)	450
TauI	GCSGC	1 cut(s)	174
TfiI	GAWTC	3 cut(s)	393, 398, 562
Tru1I	TTAA	3 cut(s)	516, 603, 684
Tru9I	TTAA	3 cut(s)	516, 603, 684
TscAI	CASTG	2 cut(s)	59, 138
TseI	GCWGC	4 cut(s)	102, 116, 317, 502
TspDTI	ATGAA	4 cut(s)	17, 318, 447, 756
TspGWI	ACGGA	1 cut(s)	75
TspMI	CCCGGG	1 cut(s)	625
TspRI	CASTG	2 cut(s)	59, 138
VpaK11BI	GGWCC	2 cut(s)	262, 364
XapI	RAATTY	3 cut(s)	329, 421, 630
XmaI	CCCGGG	1 cut(s)	625
XmnI	GAANNNNTTC	1 cut(s)	397
XspI	CTAG	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.