Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0010607

Physical Location & Seq

Genomic Coordinates Forward (+)

6627397 .. 6629075

Gene Structure 1679 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGCTGGAGGCTTGTGAGTTAAATTCAGTATCTGAGGAGGACTATCTTGAATTGGGAAGGGCTGGTTTAGGCAGTTGCTTGCTGGGTGGGTTGCCAGATTGGGTGATTGCATATTCAGCTCGCTTGGTGAGCTTTATAAATTTTGAAAGAACAAAGCTTCCTGAGGAGATTTTAAAGCACAATTTGGAAGAAAAGAGGAAGTACTTTTCAGATATTTTCCTTGAGGTTGAGAAAAGTGATGCTGAGGTTCAGGCTGAGGGTGTGTACAACCAAAGGCTTCAGAATTTGGCTGTAACTCTTGACAAGGTGAGGTATGTTATGAAATGCGCTTTTGGCAACCCCAAGGATGCTCCACCTCCGCTGGAAAGGTTAAGTCCTGAGGAGGCTGTTTCCTTTCTATGGAAGGGAGAAGGATCACTTGTACATGAGCTTCTTCAGAGCATGGCTCCTCATGTGGAGGAAAACTTGCTAAATGATCTGCAGACGAAGATCTTTGCTCGTGATCCATCAGGCCCCAAGTACACTGAGACGCTGGGATCAGGTTTTCAGGAGTATTGCAAGACGTATGGGGAGAATTATTGTTTAGGGCAGCTGATTTTTTGGTATAGCCAGGCTAGTGCAGAGCCAGATTGTAGCCTGGCAAGAGCAAGTAGGGGTTGCTTGTCATTACCAGACTTCAGTTCTTTCTATGCCAAGGAGAAGCAGCCGCAGAGACCTTGGCCCAAGGATCGAATATGGTCGTTCAGTAACTCTCGAAAAGTTATCGCCAGTCCTATGCTAGACGCTGTTGTGAATAAATCTCATTTGGACAGGGAGATGGTGCATTGGTTAAAGCACAGACCCGCGATATTTCAGGCTATGTGGGATCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009791 GO:0009908 GO:0009987 GO:0010228 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019538 GO:0022414 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0036211 GO:0042054 GO:0042800 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048443 GO:0048466 GO:0048467 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0051276 GO:0051568 GO:0061458 GO:0071704 GO:0071840 GO:0090567 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SET

Protein Analysis

291

Amino Acids

33.16

Weight (kDa)

5.52

Isoelectric Point (pI)

44.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SDG2_C	PF19633	1 - 170	5.8e-90	Protein SET DOMAIN GROUP 2 C-terminal
SDG2_C	PF19633	171 - 234	1.3e-27	Protein SET DOMAIN GROUP 2 C-terminal
SDG2_C	PF19633	233 - 290	3.9e-24	Protein SET DOMAIN GROUP 2 C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010607)

Species	Orthologous Gene IDs
pyrus_communis	pycom09g02670 pycom17g08790
rosa_chinensis	RchiOBHm_Chr2g0131031 RchiOBHm_Chr2g0131041
rosa_laevigata	RLG00000019162 RLG00000019163
rosa_multiflora	Rmu_co8448607.1_g000001 Rmu_sc0003629.1_g000060 Rmu_sc0036661.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113280
rosa_rugosa	Rorug02G0294500.1 Rorug05G0580100
rosa_samantha	Rh2AG346900 Rh2BG354200 Rh2BG354300 Rh2CG332800 Rh2DG372300 Rh6BG135200
rosa_wichuraiana	Rw0G018960 Rw2G028120 Rw2G028160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	137
AccII	CGCG	1 cut(s)	845
AciI	CCGC	3 cut(s)	359, 707, 843
AclWI	GGATC	4 cut(s)	421, 497, 544, 735
AcsI	RAATTY	3 cut(s)	22, 139, 283
AcuI	CTGAAG	3 cut(s)	263, 419, 661
AfaI	GTAC	4 cut(s)	203, 266, 423, 521
AfiI	CCNNNNNNNGG	1 cut(s)	399
AgsI	TTSAA	2 cut(s)	50, 146
AjnI	CCWGG	2 cut(s)	609, 636
AloI	GAACNNNNNNTCC	2 cut(s)	142, 174
AluBI	AGCT	5 cut(s)	119, 132, 157, 430, 592
AluI	AGCT	5 cut(s)	119, 132, 157, 430, 592
Alw26I	GTCTC	2 cut(s)	521, 706
AlwI	GGATC	4 cut(s)	421, 497, 544, 735
AlwNI	CAGNNNCTG	1 cut(s)	32
AoxI	GGCC	2 cut(s)	511, 719
ApeKI	GCWGC	2 cut(s)	589, 703
ApoI	RAATTY	3 cut(s)	22, 139, 283
AspLEI	GCGC	1 cut(s)	329
AspS9I	GGNCC	2 cut(s)	512, 720
AsuHPI	GGTGA	3 cut(s)	115, 139, 319
AxyI	CCTNAGG	2 cut(s)	162, 378
BarI	GAAGNNNNNNTAC	2 cut(s)	414, 446
BauI	CACGAG	1 cut(s)	498
BbvCI	CCTCAGC	2 cut(s)	243, 255
BbvI	GCAGC	2 cut(s)	601, 715
BccI	CCATC	2 cut(s)	514, 811
BciT130I	CCWGG	2 cut(s)	611, 638
BcoDI	GTCTC	2 cut(s)	521, 706
BfaI	CTAG	2 cut(s)	615, 779
BfmI	CTRYAG	1 cut(s)	479
BglII	AGATCT	1 cut(s)	489
BisI	GCNGC	3 cut(s)	590, 704, 707
BlsI	GCNGC	3 cut(s)	591, 705, 708
BmcAI	AGTACT	1 cut(s)	203
Bme1390I	CCNGG	2 cut(s)	611, 638
BmgT120I	GGNCC	2 cut(s)	512, 720
BmiI	GGNNCC	2 cut(s)	447, 514
BmrFI	CCNGG	2 cut(s)	611, 638
BmsI	GCATC	2 cut(s)	229, 337
BplI	GAGNNNNNCTC	2 cut(s)	430, 462
BpmI	CTGGAG	1 cut(s)	26
Bpu10I	CCTNAGC	2 cut(s)	243, 255
BpuEI	CTTGAG	1 cut(s)	242
Bsa29I	ATCGAT	1 cut(s)	868
BsaI	GGTCTC	1 cut(s)	706
BsaJI	CCNNGG	4 cut(s)	342, 693, 716, 723
Bsc4I	CCNNNNNNNGG	1 cut(s)	399
Bse1I	ACTGG	1 cut(s)	768
Bse21I	CCTNAGG	2 cut(s)	162, 378
BseBI	CCWGG	2 cut(s)	611, 638
BseCI	ATCGAT	1 cut(s)	868
BseDI	CCNNGG	4 cut(s)	342, 693, 716, 723
BseGI	GGATG	1 cut(s)	352
BseLI	CCNNNNNNNGG	1 cut(s)	399
BseMII	CTCAG	6 cut(s)	24, 153, 234, 246, 369, 516
BseNI	ACTGG	1 cut(s)	768
BseRI	GAGGAG	4 cut(s)	50, 179, 395, 438
BseXI	GCAGC	2 cut(s)	601, 715
BseYI	CCCAGC	2 cut(s)	82, 532
BsgI	GTGCAG	1 cut(s)	639
Bsh1236I	CGCG	1 cut(s)	845
BshFI	GGCC	2 cut(s)	513, 721
BshVI	ATCGAT	1 cut(s)	868
BslI	CCNNNNNNNGG	1 cut(s)	399
BsmAI	GTCTC	2 cut(s)	521, 706
BsmBI	CGTCTC	1 cut(s)	521
BsnI	GGCC	2 cut(s)	513, 721
Bso31I	GGTCTC	1 cut(s)	706
Bsp1407I	TGTACA	2 cut(s)	264, 421
Bsp143I	GATC	7 cut(s)	413, 475, 489, 502, 536, 727, 865
BspACI	CCGC	3 cut(s)	359, 707, 843
BspANI	GGCC	2 cut(s)	513, 721
BspCNI	CTCAG	6 cut(s)	25, 154, 235, 247, 370, 517
BspDI	ATCGAT	1 cut(s)	868
BspFNI	CGCG	1 cut(s)	845
BspLI	GGNNCC	2 cut(s)	447, 514
BspMAI	CTGCAG	1 cut(s)	483
BspPI	GGATC	4 cut(s)	421, 497, 544, 735
BspTNI	GGTCTC	1 cut(s)	706
BsrGI	TGTACA	2 cut(s)	264, 421
BsrI	ACTGG	1 cut(s)	768
BssECI	CCNNGG	4 cut(s)	342, 693, 716, 723
BssMI	GATC	7 cut(s)	413, 475, 489, 502, 536, 727, 865
BssSI	CACGAG	1 cut(s)	498
BssT1I	CCWWGG	4 cut(s)	342, 693, 716, 723
Bst2BI	CACGAG	1 cut(s)	498
Bst2UI	CCWGG	2 cut(s)	611, 638
BstAUI	TGTACA	2 cut(s)	264, 421
BstC8I	GCNNGC	2 cut(s)	80, 121
BstDEI	CTNAG	6 cut(s)	33, 162, 243, 255, 378, 525
BstF5I	GGATG	1 cut(s)	352
BstFNI	CGCG	1 cut(s)	845
BstHHI	GCGC	1 cut(s)	329
BstKTI	GATC	7 cut(s)	416, 478, 492, 505, 539, 730, 868
BstMAI	GTCTC	2 cut(s)	521, 706
BstMBI	GATC	7 cut(s)	413, 475, 489, 502, 536, 727, 865
BstMWI	GCNNNNNNNGC	3 cut(s)	116, 129, 333
BstNI	CCWGG	2 cut(s)	611, 638
BstSCI	CCNGG	2 cut(s)	609, 636
BstSFI	CTRYAG	1 cut(s)	479
BstUI	CGCG	1 cut(s)	845
BstV1I	GCAGC	2 cut(s)	601, 715
BstX2I	RGATCY	1 cut(s)	489
BstYI	RGATCY	1 cut(s)	489
Bsu15I	ATCGAT	1 cut(s)	868
Bsu36I	CCTNAGG	2 cut(s)	162, 378
BsuRI	GGCC	2 cut(s)	513, 721
BsuTUI	ATCGAT	1 cut(s)	868
BtsCI	GGATG	1 cut(s)	352
BtsIMutI	CAGTG	1 cut(s)	522
Cac8I	GCNNGC	2 cut(s)	80, 121
CaiI	CAGNNNCTG	1 cut(s)	32
CfoI	GCGC	1 cut(s)	329
Cfr13I	GGNCC	2 cut(s)	512, 720
ClaI	ATCGAT	1 cut(s)	868
CseI	GACGC	2 cut(s)	538, 791
Csp6I	GTAC	4 cut(s)	202, 265, 422, 520
CviAII	CATG	3 cut(s)	425, 442, 452
CviQI	GTAC	4 cut(s)	202, 265, 422, 520
DdeI	CTNAG	6 cut(s)	33, 162, 243, 255, 378, 525
DpnI	GATC	7 cut(s)	415, 477, 491, 504, 538, 729, 867
DpnII	GATC	7 cut(s)	413, 475, 489, 502, 536, 727, 865
DraI	TTTAAA	1 cut(s)	174
Eco130I	CCWWGG	4 cut(s)	342, 693, 716, 723
Eco31I	GGTCTC	1 cut(s)	706
Eco57I	CTGAAG	3 cut(s)	263, 419, 661
Eco81I	CCTNAGG	2 cut(s)	162, 378
EcoO109I	RGGNCCY	1 cut(s)	512
EcoRII	CCWGG	2 cut(s)	609, 636
EcoT14I	CCWWGG	4 cut(s)	342, 693, 716, 723
ErhI	CCWWGG	4 cut(s)	342, 693, 716, 723
Esp3I	CGTCTC	1 cut(s)	521
FaeI	CATG	3 cut(s)	428, 445, 455
FalI	AAGNNNNNCTT	2 cut(s)	402, 434
FatI	CATG	3 cut(s)	424, 441, 451
FauI	CCCGC	1 cut(s)	850
Fnu4HI	GCNGC	3 cut(s)	590, 704, 707
FokI	GGATG	1 cut(s)	359
Fsp4HI	GCNGC	3 cut(s)	590, 704, 707
FspBI	CTAG	2 cut(s)	615, 779
GlaI	GCGC	1 cut(s)	328
GluI	GCNGC	3 cut(s)	590, 704, 707
GsaI	CCCAGC	2 cut(s)	86, 536
GsuI	CTGGAG	1 cut(s)	26
HaeIII	GGCC	2 cut(s)	513, 721
HgaI	GACGC	2 cut(s)	538, 791
HhaI	GCGC	1 cut(s)	329
Hin1II	CATG	3 cut(s)	428, 445, 455
Hin6I	GCGC	1 cut(s)	327
HinP1I	GCGC	1 cut(s)	327
HindIII	AAGCTT	1 cut(s)	155
HphI	GGTGA	3 cut(s)	115, 139, 319
Hpy166II	GTNNAC	2 cut(s)	265, 522
Hpy188I	TCNGA	4 cut(s)	34, 211, 282, 438
Hpy188III	TCNNGA	7 cut(s)	47, 161, 299, 377, 500, 548, 753
Hpy8I	GTNNAC	2 cut(s)	265, 522
HpyAV	CCTTC	3 cut(s)	51, 397, 404
HpyCH4IV	ACGT	1 cut(s)	563
HpyCH4V	TGCA	5 cut(s)	110, 481, 558, 620, 823
HpyF10VI	GCNNNNNNNGC	3 cut(s)	116, 129, 333
HpyF3I	CTNAG	6 cut(s)	33, 162, 243, 255, 378, 525
HpySE526I	ACGT	1 cut(s)	563
Hsp92II	CATG	3 cut(s)	428, 445, 455
HspAI	GCGC	1 cut(s)	327
Kzo9I	GATC	7 cut(s)	413, 475, 489, 502, 536, 727, 865
LmnI	GCTCC	2 cut(s)	355, 451
Lsp1109I	GCAGC	2 cut(s)	601, 715
LweI	GCATC	2 cut(s)	229, 337
MaeI	CTAG	2 cut(s)	615, 779
MaeII	ACGT	1 cut(s)	563
MaeIII	GTNAC	2 cut(s)	292, 746
MalI	GATC	7 cut(s)	415, 477, 491, 504, 538, 729, 867
MboI	GATC	7 cut(s)	413, 475, 489, 502, 536, 727, 865
MboII	GAAGA	3 cut(s)	200, 425, 499
MflI	RGATCY	1 cut(s)	489
MluCI	AATT	6 cut(s)	22, 50, 139, 181, 283, 574
MseI	TTAA	4 cut(s)	20, 173, 371, 830
MspA1I	CMGCKG	2 cut(s)	361, 592
MspR9I	CCNGG	2 cut(s)	611, 638
MvaI	CCWGG	2 cut(s)	611, 638
MvnI	CGCG	1 cut(s)	845
MwoI	GCNNNNNNNGC	3 cut(s)	116, 129, 333
NdeII	GATC	7 cut(s)	413, 475, 489, 502, 536, 727, 865
NlaIII	CATG	3 cut(s)	428, 445, 455
NlaIV	GGNNCC	2 cut(s)	447, 514
PkrI	GCNGC	3 cut(s)	591, 705, 708
PsiI	TTATAA	1 cut(s)	137
Psp6I	CCWGG	2 cut(s)	609, 636
PspFI	CCCAGC	2 cut(s)	82, 532
PspGI	CCWGG	2 cut(s)	609, 636
PspN4I	GGNNCC	2 cut(s)	447, 514
PspPI	GGNCC	2 cut(s)	512, 720
PstI	CTGCAG	1 cut(s)	483
PstNI	CAGNNNCTG	1 cut(s)	32
PsuI	RGATCY	1 cut(s)	489
PvuII	CAGCTG	1 cut(s)	592
RsaI	GTAC	4 cut(s)	203, 266, 423, 521
RsaNI	GTAC	4 cut(s)	202, 265, 422, 520
SaqAI	TTAA	4 cut(s)	20, 173, 371, 830
SatI	GCNGC	3 cut(s)	590, 704, 707
Sau3AI	GATC	7 cut(s)	413, 475, 489, 502, 536, 727, 865
Sau96I	GGNCC	2 cut(s)	512, 720
ScaI	AGTACT	1 cut(s)	203
ScrFI	CCNGG	2 cut(s)	611, 638
SfaNI	GCATC	2 cut(s)	229, 337
SfcI	CTRYAG	1 cut(s)	479
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
Sse9I	AATT	6 cut(s)	22, 50, 139, 181, 283, 574
SsiI	CCGC	3 cut(s)	359, 707, 843
SspMI	CTAG	2 cut(s)	615, 779
StyD4I	CCNGG	2 cut(s)	609, 636
StyI	CCWWGG	4 cut(s)	342, 693, 716, 723
TaiI	ACGT	1 cut(s)	566
TaqI	TCGA	3 cut(s)	730, 754, 868
TasI	AATT	6 cut(s)	22, 50, 139, 181, 283, 574
TatI	WGTACW	4 cut(s)	201, 264, 421, 519
TauI	GCSGC	1 cut(s)	709
Tru1I	TTAA	4 cut(s)	20, 173, 371, 830
Tru9I	TTAA	4 cut(s)	20, 173, 371, 830
TscAI	CASTG	1 cut(s)	529
TseI	GCWGC	2 cut(s)	589, 703
TspDTI	ATGAA	1 cut(s)	335
TspRI	CASTG	1 cut(s)	529
XapI	RAATTY	3 cut(s)	22, 139, 283
XspI	CTAG	2 cut(s)	615, 779
ZrmI	AGTACT	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.