Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0010607

Physical Location & Seq

Genomic Coordinates Forward (+)

38797606 .. 38802811

Gene Structure 5206 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00113280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGTGCTCTGTATTTGGCAACCCAAAGAATGCTCCACCTCCACTGGAGAGGTTAAGTCCAGAAGAAGCTGTTGGCTTTCTATGGGAGGGAGAAGGATCATTTGTTGAGGAAGTCCTTCAGAGGATTGCTCCTAATGTGGAGGAACAATTGCTAAATGATCTCAAGTCCAAAATGCCTACTCATGATCCGTCGGGTTCAGATGACATTTGGAAAGAACTTGAGAGTTTGTTACAATGGTTGAGAGATGAGGTCAGGAATCTTCCAAGTACATGCACGTCTAAGCTTAACGCTGCTGCTGACTTTATGCATGCAGAAGGAACTACATTAGAATACGGGAATACAAACCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009791 GO:0009908 GO:0009987 GO:0010228 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019538 GO:0022414 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0036211 GO:0042054 GO:0042800 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048443 GO:0048466 GO:0048467 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0051276 GO:0051568 GO:0061458 GO:0071704 GO:0071840 GO:0090567 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SET

Protein Analysis

116

Amino Acids

12.96

Weight (kDa)

4.43

Isoelectric Point (pI)

54.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SDG2_C	PF19633	1 - 105	3.3e-37	Protein SET DOMAIN GROUP 2 C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0010607)

Species	Orthologous Gene IDs
pyrus_communis	pycom09g02670 pycom17g08790
rosa_chinensis	RchiOBHm_Chr2g0131031 RchiOBHm_Chr2g0131041
rosa_laevigata	RLG00000019162 RLG00000019163
rosa_multiflora	Rmu_co8448607.1_g000001 Rmu_sc0003629.1_g000060 Rmu_sc0036661.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113280
rosa_rugosa	Rorug02G0294500.1 Rorug05G0580100
rosa_samantha	Rh2AG346900 Rh2BG354200 Rh2BG354300 Rh2CG332800 Rh2DG372300 Rh6BG135200
rosa_wichuraiana	Rw0G018960 Rw2G028120 Rw2G028160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	103, 179
AcuI	CTGAAG	1 cut(s)	101
AfaI	GTAC	1 cut(s)	268
AjiI	CACGTC	1 cut(s)	276
AjuI	GAANNNNNNNTTGG	2 cut(s)	54, 86
AluBI	AGCT	2 cut(s)	68, 283
AluI	AGCT	2 cut(s)	68, 283
Alw21I	GWGCWC	1 cut(s)	8
AlwI	GGATC	2 cut(s)	103, 179
ApeKI	GCWGC	2 cut(s)	290, 293
Asp700I	GAANNNNTTC	1 cut(s)	114
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	2 cut(s)	277, 280
BisI	GCNGC	2 cut(s)	291, 294
BlsI	GCNGC	2 cut(s)	292, 295
BmgBI	CACGTC	1 cut(s)	276
BplI	GAGNNNNNCTC	2 cut(s)	112, 144
BpmI	CTGGAG	1 cut(s)	65
BpuEI	CTTGAG	2 cut(s)	146, 239
Bse1I	ACTGG	1 cut(s)	48
BseNI	ACTGG	1 cut(s)	48
BseXI	GCAGC	2 cut(s)	277, 280
BsiHKAI	GWGCWC	1 cut(s)	8
BsmI	GAATGC	1 cut(s)	34
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	3 cut(s)	95, 157, 184
BspHI	TCATGA	1 cut(s)	181
BspPI	GGATC	2 cut(s)	103, 179
BsrI	ACTGG	1 cut(s)	48
BssMI	GATC	3 cut(s)	95, 157, 184
BstC8I	GCNNGC	1 cut(s)	309
BstDEI	CTNAG	1 cut(s)	279
BstKTI	GATC	3 cut(s)	98, 160, 187
BstMBI	GATC	3 cut(s)	95, 157, 184
BstNSI	RCATGY	2 cut(s)	273, 311
BstV1I	GCAGC	2 cut(s)	277, 280
BtrI	CACGTC	1 cut(s)	276
BtsIMutI	CAGTG	1 cut(s)	41
Cac8I	GCNNGC	1 cut(s)	309
CciI	TCATGA	1 cut(s)	181
Csp6I	GTAC	1 cut(s)	267
CviAII	CATG	3 cut(s)	182, 270, 308
CviJI	RGCY	3 cut(s)	68, 75, 283
CviKI_1	RGCY	3 cut(s)	68, 75, 283
CviQI	GTAC	1 cut(s)	267
DdeI	CTNAG	1 cut(s)	279
DpnI	GATC	3 cut(s)	97, 159, 186
DpnII	GATC	3 cut(s)	95, 157, 184
Eco57I	CTGAAG	1 cut(s)	101
EcoT22I	ATGCAT	1 cut(s)	309
FaeI	CATG	3 cut(s)	185, 273, 311
FaiI	YATR	5 cut(s)	82, 183, 271, 305, 309
FatI	CATG	3 cut(s)	181, 269, 307
Fnu4HI	GCNGC	2 cut(s)	291, 294
Fsp4HI	GCNGC	2 cut(s)	291, 294
GluI	GCNGC	2 cut(s)	291, 294
GsuI	CTGGAG	1 cut(s)	65
Hin1II	CATG	3 cut(s)	185, 273, 311
HindIII	AAGCTT	1 cut(s)	281
HinfI	GANTC	1 cut(s)	256
Hpy188I	TCNGA	2 cut(s)	120, 199
Hpy188III	TCNNGA	3 cut(s)	59, 182, 253
Hpy99I	CGWCG	1 cut(s)	193
HpyAV	CCTTC	3 cut(s)	86, 125, 308
HpyCH4IV	ACGT	1 cut(s)	275
HpyCH4V	TGCA	3 cut(s)	273, 307, 311
HpyF3I	CTNAG	1 cut(s)	279
HpySE526I	ACGT	1 cut(s)	275
Hsp92II	CATG	3 cut(s)	185, 273, 311
Kzo9I	GATC	3 cut(s)	95, 157, 184
LmnI	GCTCC	2 cut(s)	37, 133
LpnPI	CCDG	3 cut(s)	29, 72, 238
Lsp1109I	GCAGC	2 cut(s)	277, 280
MaeII	ACGT	1 cut(s)	275
MaeIII	GTNAC	1 cut(s)	228
MalI	GATC	3 cut(s)	97, 159, 186
MboI	GATC	3 cut(s)	95, 157, 184
MboII	GAAGA	2 cut(s)	74, 251
MfeI	CAATTG	1 cut(s)	146
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	1 cut(s)	146
MnlI	CCTC	7 cut(s)	42, 48, 79, 100, 114, 133, 241
Mph1103I	ATGCAT	1 cut(s)	309
MroXI	GAANNNNTTC	1 cut(s)	114
MseI	TTAA	2 cut(s)	53, 285
MunI	CAATTG	1 cut(s)	146
Mva1269I	GAATGC	1 cut(s)	34
NdeII	GATC	3 cut(s)	95, 157, 184
NlaIII	CATG	3 cut(s)	185, 273, 311
NsiI	ATGCAT	1 cut(s)	309
NspI	RCATGY	2 cut(s)	273, 311
PaeI	GCATGC	1 cut(s)	311
PagI	TCATGA	1 cut(s)	181
PctI	GAATGC	1 cut(s)	34
PdmI	GAANNNNTTC	1 cut(s)	114
PfeI	GAWTC	1 cut(s)	256
PkrI	GCNGC	2 cut(s)	292, 295
RsaI	GTAC	1 cut(s)	268
RsaNI	GTAC	1 cut(s)	267
SaqAI	TTAA	2 cut(s)	53, 285
SatI	GCNGC	2 cut(s)	291, 294
Sau3AI	GATC	3 cut(s)	95, 157, 184
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	6 cut(s)	40, 53, 70, 252, 278, 285
SmlI	CTYRAG	2 cut(s)	161, 218
SmoI	CTYRAG	2 cut(s)	161, 218
SphI	GCATGC	1 cut(s)	311
Sse9I	AATT	1 cut(s)	146
TaiI	ACGT	1 cut(s)	278
TasI	AATT	1 cut(s)	146
TatI	WGTACW	1 cut(s)	266
TfiI	GAWTC	1 cut(s)	256
Tru1I	TTAA	2 cut(s)	53, 285
Tru9I	TTAA	2 cut(s)	53, 285
TscAI	CASTG	1 cut(s)	48
TseI	GCWGC	2 cut(s)	290, 293
TspGWI	ACGGA	1 cut(s)	177
TspRI	CASTG	1 cut(s)	48
XceI	RCATGY	2 cut(s)	273, 311
XmnI	GAANNNNTTC	1 cut(s)	114
Zsp2I	ATGCAT	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.