Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0010607

Physical Location & Seq

Genomic Coordinates Reverse (-)

51032126 .. 51035311

Gene Structure 3186 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG346900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGTTGCTTATAGAAAGGCGTATCCTGTTTGGAAATGGTATGAGAAGCAAGATGGGATTCGGTCTCTGCAGAAAAATAGGTGATGCTGATGGGTATGATTTAGTTGTTGTTGATGCCATGCATAAAGCAACCTATGCAAGTAGAATTTGTCACTTGTGCCGACCTAATTGTGAAGCAAAAGTTACTGCTGTAGATGGTCATTACAAGATTGGAATATACACCGTACGTAAAATTCAATACGGTGAAGAGATCACATTGGACTACAACTCTGTTAAGGAGAGTAAGGAAGAATATGAAGCATCAGATTGTTTGTGCGGCAGTCAAGTTTGCCGGGGAGGTTACCTGAATTTGATAGGCGAAGGATCATTCCTGGAGATGCTGAAGGATTGTCATAAAATTCTGAATTGTCATCGTCTAATGCTGGAAGCTTGCGAGTTAAATTCAGTATCTGAGGTGGATTCACTTGACCTATTGAGTGATTGCATATTCAGCTTGTTTGGGGAGGTAAAGCACAACTTAAAAGAAAAGAACAATTATTGCTCAGATACATGTCGTGAGGTTGAGAGGAGTGATGCAGAGGCTGACGGTGTGTTCAAACAAAGGGTTCAGAGTTTGGCTGTTACTCTTGACAAGATGAAGTATGTTATGTGCTCTGTATTTGGCAACCCAAAGAATGCTCCACCTCCACTGGAGAGGTTAAGTCCAGAAGAAGCTGTTGGCTTTCTATGGGAGGGAGAAGGATCATTTGTTGAGGAAGTCCTTCAGAGGATTGCTCCTAATGTGGAGGAACAATTGCTAAATGATCTCAAGTCCAAAATGCCTACTCATGATCCGTCGGGTTTAGATGACATTTGGAAAGAACTTGAGAGTTTGTTACAATGGTTGAGAGATGAGGTCAGGAATCTTCCAAGTACATGCACGTCTAAGCTTAACGCTGCTGCTGACTTTATGCATGCAGAAGGAACTACATTAGAATACGGGAATACAAACCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009791 GO:0009908 GO:0009987 GO:0010228 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019538 GO:0022414 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0036211 GO:0042054 GO:0042800 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048443 GO:0048466 GO:0048467 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0051276 GO:0051568 GO:0061458 GO:0071704 GO:0071840 GO:0090567 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SET

Protein Analysis

331

Amino Acids

37.23

Weight (kDa)

5.02

Isoelectric Point (pI)

44.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SET	PF00856	36 - 89	4.3e-10	SET domain
SDG2_C	PF19633	100 - 158	2.6e-20	Protein SET DOMAIN GROUP 2 C-terminal
SDG2_C	PF19633	169 - 320	6.5e-56	Protein SET DOMAIN GROUP 2 C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0010607)

Species	Orthologous Gene IDs
pyrus_communis	pycom09g02670 pycom17g08790
rosa_chinensis	RchiOBHm_Chr2g0131031 RchiOBHm_Chr2g0131041
rosa_laevigata	RLG00000019162 RLG00000019163
rosa_multiflora	Rmu_co8448607.1_g000001 Rmu_sc0003629.1_g000060 Rmu_sc0036661.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113280
rosa_rugosa	Rorug02G0294500.1 Rorug05G0580100
rosa_samantha	Rh2AG346900 Rh2BG354200 Rh2BG354300 Rh2CG332800 Rh2DG372300 Rh6BG135200
rosa_wichuraiana	Rw0G018960 Rw2G028120 Rw2G028160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	315
AclWI	GGATC	3 cut(s)	370, 748, 824
AcsI	RAATTY	5 cut(s)	144, 231, 346, 396, 439
AcuI	CTGAAG	2 cut(s)	401, 746
AfaI	GTAC	2 cut(s)	225, 913
AflIII	ACRYGT	1 cut(s)	548
AgsI	TTSAA	2 cut(s)	236, 595
AjiI	CACGTC	1 cut(s)	921
AjnI	CCWGG	1 cut(s)	369
AjuI	GAANNNNNNNTTGG	2 cut(s)	699, 731
AluBI	AGCT	4 cut(s)	428, 492, 713, 928
AluI	AGCT	4 cut(s)	428, 492, 713, 928
Alw21I	GWGCWC	1 cut(s)	653
Alw26I	GTCTC	1 cut(s)	68
AlwI	GGATC	3 cut(s)	370, 748, 824
AlwNI	CAGNNNCTG	2 cut(s)	449, 581
ApeKI	GCWGC	2 cut(s)	935, 938
ApoI	RAATTY	5 cut(s)	144, 231, 346, 396, 439
Asp700I	GAANNNNTTC	1 cut(s)	759
AsuC2I	CCSGG	1 cut(s)	332
AsuHPI	GGTGA	2 cut(s)	92, 254
Bbv12I	GWGCWC	1 cut(s)	653
BbvI	GCAGC	2 cut(s)	922, 925
BccI	CCATC	3 cut(s)	46, 83, 188
BciT130I	CCWGG	1 cut(s)	371
BciVI	GTATCC	1 cut(s)	32
BcnI	CCSGG	1 cut(s)	332
BcoDI	GTCTC	1 cut(s)	68
BfmI	CTRYAG	2 cut(s)	67, 189
BfuI	GTATCC	1 cut(s)	32
BisI	GCNGC	3 cut(s)	316, 936, 939
BlsI	GCNGC	3 cut(s)	317, 937, 940
Bme1390I	CCNGG	2 cut(s)	332, 371
BmgBI	CACGTC	1 cut(s)	921
BmrFI	CCNGG	2 cut(s)	332, 371
BmsI	GCATC	5 cut(s)	73, 103, 308, 366, 562
BplI	GAGNNNNNCTC	2 cut(s)	757, 789
BpmI	CTGGAG	2 cut(s)	392, 710
BpuEI	CTTGAG	2 cut(s)	791, 884
BpuMI	CCSGG	1 cut(s)	332
BsaAI	YACGTR	1 cut(s)	227
BsaI	GGTCTC	1 cut(s)	68
BsaJI	CCNNGG	1 cut(s)	331
Bse1I	ACTGG	1 cut(s)	693
BseBI	CCWGG	1 cut(s)	371
BseDI	CCNNGG	1 cut(s)	331
BseMII	CTCAG	2 cut(s)	441, 555
BseNI	ACTGG	1 cut(s)	693
BseRI	GAGGAG	1 cut(s)	580
BseXI	GCAGC	2 cut(s)	922, 925
BsiHKAI	GWGCWC	1 cut(s)	653
BsiSI	CCGG	1 cut(s)	331
BsiWI	CGTACG	1 cut(s)	223
BsmAI	GTCTC	1 cut(s)	68
BsmI	GAATGC	1 cut(s)	679
Bso31I	GGTCTC	1 cut(s)	68
Bsp1286I	GDGCHC	1 cut(s)	653
Bsp143I	GATC	5 cut(s)	249, 362, 740, 802, 829
BspACI	CCGC	1 cut(s)	315
BspCNI	CTCAG	2 cut(s)	442, 554
BspHI	TCATGA	1 cut(s)	826
BspMAI	CTGCAG	1 cut(s)	71
BspPI	GGATC	3 cut(s)	370, 748, 824
BspTNI	GGTCTC	1 cut(s)	68
BsrI	ACTGG	1 cut(s)	693
BssECI	CCNNGG	1 cut(s)	331
BssMI	GATC	5 cut(s)	249, 362, 740, 802, 829
Bst2UI	CCWGG	1 cut(s)	371
Bst4CI	ACNGT	3 cut(s)	223, 242, 587
Bst6I	CTCTTC	1 cut(s)	240
BstAPI	GCANNNNNTGC	1 cut(s)	134
BstBAI	YACGTR	1 cut(s)	227
BstC8I	GCNNGC	2 cut(s)	430, 954
BstDEI	CTNAG	3 cut(s)	450, 541, 924
BstEII	GGTNACC	1 cut(s)	338
BstKTI	GATC	5 cut(s)	252, 365, 743, 805, 832
BstMAI	GTCTC	1 cut(s)	68
BstMBI	GATC	5 cut(s)	249, 362, 740, 802, 829
BstMWI	GCNNNNNNNGC	2 cut(s)	134, 489
BstNI	CCWGG	1 cut(s)	371
BstNSI	RCATGY	3 cut(s)	552, 918, 956
BstPI	GGTNACC	1 cut(s)	338
BstSCI	CCNGG	2 cut(s)	330, 369
BstSFI	CTRYAG	2 cut(s)	67, 189
BstSNI	TACGTA	1 cut(s)	227
BstV1I	GCAGC	2 cut(s)	922, 925
BsuI	GTATCC	1 cut(s)	32
BtrI	CACGTC	1 cut(s)	921
BtsIMutI	CAGTG	1 cut(s)	686
Cac8I	GCNNGC	2 cut(s)	430, 954
CaiI	CAGNNNCTG	2 cut(s)	449, 581
CciI	TCATGA	1 cut(s)	826
Csp6I	GTAC	2 cut(s)	224, 912
CviAII	CATG	5 cut(s)	118, 549, 827, 915, 953
CviJI	RGCY	7 cut(s)	428, 492, 581, 617, 713, 720, 928
CviKI_1	RGCY	7 cut(s)	428, 492, 581, 617, 713, 720, 928
CviQI	GTAC	2 cut(s)	224, 912
DdeI	CTNAG	3 cut(s)	450, 541, 924
DpnI	GATC	5 cut(s)	251, 364, 742, 804, 831
DpnII	GATC	5 cut(s)	249, 362, 740, 802, 829
Eam1104I	CTCTTC	1 cut(s)	240
EarI	CTCTTC	1 cut(s)	240
Eco105I	TACGTA	1 cut(s)	227
Eco31I	GGTCTC	1 cut(s)	68
Eco57I	CTGAAG	2 cut(s)	401, 746
Eco91I	GGTNACC	1 cut(s)	338
EcoO65I	GGTNACC	1 cut(s)	338
EcoRII	CCWGG	1 cut(s)	369
EcoT22I	ATGCAT	2 cut(s)	123, 954
FaeI	CATG	5 cut(s)	121, 552, 830, 918, 956
FalI	AAGNNNNNCTT	2 cut(s)	500, 532
FatI	CATG	5 cut(s)	117, 548, 826, 914, 952
Fnu4HI	GCNGC	3 cut(s)	316, 936, 939
Fsp4HI	GCNGC	3 cut(s)	316, 936, 939
GluI	GCNGC	3 cut(s)	316, 936, 939
GsuI	CTGGAG	2 cut(s)	392, 710
HapII	CCGG	1 cut(s)	331
Hin1II	CATG	5 cut(s)	121, 552, 830, 918, 956
HindIII	AAGCTT	2 cut(s)	426, 926
HinfI	GANTC	3 cut(s)	57, 458, 901
HpaII	CCGG	1 cut(s)	331
HphI	GGTGA	2 cut(s)	92, 254
Hpy188I	TCNGA	6 cut(s)	304, 402, 451, 544, 609, 765
Hpy188III	TCNNGA	5 cut(s)	554, 626, 704, 827, 898
Hpy99I	CGWCG	1 cut(s)	838
HpyAV	CCTTC	5 cut(s)	353, 376, 731, 770, 953
HpyCH4III	ACNGT	3 cut(s)	223, 242, 587
HpyCH4IV	ACGT	2 cut(s)	226, 920
HpyCH4V	TGCA	8 cut(s)	69, 121, 137, 483, 575, 918, 952, 956
HpyF10VI	GCNNNNNNNGC	2 cut(s)	134, 489
HpyF3I	CTNAG	3 cut(s)	450, 541, 924
HpySE526I	ACGT	2 cut(s)	226, 920
Hsp92II	CATG	5 cut(s)	121, 552, 830, 918, 956
Kzo9I	GATC	5 cut(s)	249, 362, 740, 802, 829
LmnI	GCTCC	2 cut(s)	682, 778
LpnPI	CCDG	9 cut(s)	38, 344, 356, 356, 383, 407, 674, 717, 883
Lsp1109I	GCAGC	2 cut(s)	922, 925
LweI	GCATC	5 cut(s)	73, 103, 308, 366, 562
MaeII	ACGT	2 cut(s)	226, 920
MaeIII	GTNAC	5 cut(s)	149, 181, 338, 619, 873
MalI	GATC	5 cut(s)	251, 364, 742, 804, 831
MboI	GATC	5 cut(s)	249, 362, 740, 802, 829
MboII	GAAGA	4 cut(s)	257, 299, 719, 896
MfeI	CAATTG	1 cut(s)	791
MhlI	GDGCHC	1 cut(s)	653
MluCI	AATT	9 cut(s)	144, 166, 231, 346, 396, 403, 439, 532, 791
Mph1103I	ATGCAT	2 cut(s)	123, 954
MroXI	GAANNNNTTC	1 cut(s)	759
MseI	TTAA	5 cut(s)	273, 437, 518, 698, 930
MspI	CCGG	1 cut(s)	331
MspR9I	CCNGG	2 cut(s)	332, 371
MunI	CAATTG	1 cut(s)	791
Mva1269I	GAATGC	1 cut(s)	679
MvaI	CCWGG	1 cut(s)	371
MwoI	GCNNNNNNNGC	2 cut(s)	134, 489
NciI	CCSGG	1 cut(s)	332
NdeII	GATC	5 cut(s)	249, 362, 740, 802, 829
NlaIII	CATG	5 cut(s)	121, 552, 830, 918, 956
NmuCI	GTSAC	1 cut(s)	149
NsiI	ATGCAT	2 cut(s)	123, 954
NspI	RCATGY	3 cut(s)	552, 918, 956
PaeI	GCATGC	1 cut(s)	956
PagI	TCATGA	1 cut(s)	826
PciI	ACATGT	1 cut(s)	548
PctI	GAATGC	1 cut(s)	679
PdmI	GAANNNNTTC	1 cut(s)	759
PfeI	GAWTC	3 cut(s)	57, 458, 901
Pfl23II	CGTACG	1 cut(s)	223
PfoI	TCCNGGA	1 cut(s)	369
PkrI	GCNGC	3 cut(s)	317, 937, 940
Ppu21I	YACGTR	1 cut(s)	227
PscI	ACATGT	1 cut(s)	548
Psp6I	CCWGG	1 cut(s)	369
PspEI	GGTNACC	1 cut(s)	338
PspGI	CCWGG	1 cut(s)	369
PspLI	CGTACG	1 cut(s)	223
PstI	CTGCAG	1 cut(s)	71
PstNI	CAGNNNCTG	2 cut(s)	449, 581
RsaI	GTAC	2 cut(s)	225, 913
RsaNI	GTAC	2 cut(s)	224, 912
SaqAI	TTAA	5 cut(s)	273, 437, 518, 698, 930
SatI	GCNGC	3 cut(s)	316, 936, 939
Sau3AI	GATC	5 cut(s)	249, 362, 740, 802, 829
ScrFI	CCNGG	2 cut(s)	332, 371
SduI	GDGCHC	1 cut(s)	653
SfaNI	GCATC	5 cut(s)	73, 103, 308, 366, 562
SfcI	CTRYAG	2 cut(s)	67, 189
SmlI	CTYRAG	2 cut(s)	806, 863
SmoI	CTYRAG	2 cut(s)	806, 863
SnaBI	TACGTA	1 cut(s)	227
SphI	GCATGC	1 cut(s)	956
Sse9I	AATT	9 cut(s)	144, 166, 231, 346, 396, 403, 439, 532, 791
SsiI	CCGC	1 cut(s)	315
StyD4I	CCNGG	2 cut(s)	330, 369
TaaI	ACNGT	3 cut(s)	223, 242, 587
TaiI	ACGT	2 cut(s)	229, 923
TaqII	GACCGA	1 cut(s)	50
TasI	AATT	9 cut(s)	144, 166, 231, 346, 396, 403, 439, 532, 791
TatI	WGTACW	1 cut(s)	911
TauI	GCSGC	1 cut(s)	318
TfiI	GAWTC	3 cut(s)	57, 458, 901
Tru1I	TTAA	5 cut(s)	273, 437, 518, 698, 930
Tru9I	TTAA	5 cut(s)	273, 437, 518, 698, 930
TscAI	CASTG	1 cut(s)	693
TseFI	GTSAC	1 cut(s)	149
TseI	GCWGC	2 cut(s)	935, 938
Tsp45I	GTSAC	1 cut(s)	149
TspDTI	ATGAA	2 cut(s)	309, 650
TspGWI	ACGGA	1 cut(s)	822
TspRI	CASTG	1 cut(s)	693
XapI	RAATTY	5 cut(s)	144, 231, 346, 396, 439
XceI	RCATGY	3 cut(s)	552, 918, 956
XmnI	GAANNNNTTC	1 cut(s)	759
Zsp2I	ATGCAT	2 cut(s)	123, 954

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.