Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003629.1

Orthogroup ID

OG0010607

Physical Location & Seq

Genomic Coordinates Reverse (-)

252562 .. 256992

Gene Structure 4431 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003629.1_g000060.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

atgttacggcggccaaccgatgccgttcaattcgccgacttgtctcagctcttgcctgttgtcgaagacattcagaaaactgctaatgaggatagtgatcttcaaattgtgtatcctttttggaaatggtatgagaagcaagatgggattcgatctctgcagaaaaatagtaaggatccagctccagaattttacaacttttatcttgaaaggcccaagggtgatgctgatgggtatgatttagttgttgttgatgccatgcataaagcaacctatgcaagtagaatttgtcacttgtgccgacctaattgtgaagcaaaagttactgctgtagatggtcgttacaagattggaatatacaccgtacgtaaaattcaatacggtgaagagatcacattggactacaactctattaaggagggtaaggaagaatatgaagcatcagattgtttgtgcggcagtcaagtttgccggggaggttacctgaatttgataggcgaaggatcattcctggagatgctgaaggattgtcataaaattctgaattgtcatcgtctaatgctggaagcttgcgagttaaattcagtatctgaggtggattcacttgacctattgagtgattgcatattcagcttgtttggggaggtaaagcacaacttaaaagaaaagaacaattattgctcagatacatgtcgtgaggttgagaggagtgatgcagaggctgacggtgtgttcaaacaaagggttcagagtttggctgttactcttgacaagatgaagtatgttatgtgctctgtatttggcaacccaaagaatgctccacctacactggagaggttaagtccagaagaagctgttggctttctatgggagggagaaggatcatttgttgaggaagtccttcagaggattgctcctaatgtggaggaagaattgctaaatgatctcaagtccaaaatgcctactcatgatccgtcgggttcagatgacatttggaaagaacttgagagtttgttacaatggttgagagatgaggtcaggaatcttccaagtacatgcacgtctaagcttaacgctgctgctgactttatgcatgcagaaggaactacattagaatacgggaatacaaaccaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009791 GO:0009908 GO:0009987 GO:0010228 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019538 GO:0022414 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0036211 GO:0042054 GO:0042800 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048443 GO:0048466 GO:0048467 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0051276 GO:0051568 GO:0061458 GO:0071704 GO:0071840 GO:0090567 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SET

Protein Analysis

378

Amino Acids

42.9

Weight (kDa)

4.77

Isoelectric Point (pI)

46.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010607)

Species	Orthologous Gene IDs
pyrus_communis	pycom09g02670 pycom17g08790
rosa_chinensis	RchiOBHm_Chr2g0131031 RchiOBHm_Chr2g0131041
rosa_laevigata	RLG00000019162 RLG00000019163
rosa_multiflora	Rmu_co8448607.1_g000001 Rmu_sc0003629.1_g000060 Rmu_sc0036661.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113280
rosa_rugosa	Rorug02G0294500.1 Rorug05G0580100
rosa_samantha	Rh2AG346900 Rh2BG354200 Rh2BG354300 Rh2CG332800 Rh2DG372300 Rh6BG135200
rosa_wichuraiana	Rw0G018960 Rw2G028120 Rw2G028160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	10, 456
AclWI	GGATC	5 cut(s)	170, 183, 511, 889, 965
AcoI	YGGCCR	1 cut(s)	11
AcsI	RAATTY	6 cut(s)	188, 285, 372, 487, 537, 580
AcuI	CTGAAG	2 cut(s)	542, 887
AfaI	GTAC	2 cut(s)	366, 1054
AflIII	ACRYGT	1 cut(s)	689
AgsI	TTSAA	5 cut(s)	29, 104, 209, 377, 736
AjiI	CACGTC	1 cut(s)	1062
AjnI	CCWGG	1 cut(s)	510
AjuI	GAANNNNNNNTTGG	2 cut(s)	840, 872
AluBI	AGCT	6 cut(s)	49, 182, 569, 633, 854, 1069
AluI	AGCT	6 cut(s)	49, 182, 569, 633, 854, 1069
Alw21I	GWGCWC	1 cut(s)	794
Alw26I	GTCTC	1 cut(s)	48
AlwI	GGATC	5 cut(s)	170, 183, 511, 889, 965
AlwNI	CAGNNNCTG	2 cut(s)	590, 722
AoxI	GGCC	2 cut(s)	11, 212
ApeKI	GCWGC	2 cut(s)	1076, 1079
ApoI	RAATTY	6 cut(s)	188, 285, 372, 487, 537, 580
Asp700I	GAANNNNTTC	2 cut(s)	69, 900
AspS9I	GGNCC	1 cut(s)	213
AsuC2I	CCSGG	1 cut(s)	473
AsuHPI	GGTGA	2 cut(s)	233, 395
BamHI	GGATCC	1 cut(s)	175
BbsI	GAAGAC	1 cut(s)	72
Bbv12I	GWGCWC	1 cut(s)	794
BbvI	GCAGC	2 cut(s)	1063, 1066
BccI	CCATC	3 cut(s)	137, 224, 329
BceAI	ACGGC	2 cut(s)	8, 23
BciT130I	CCWGG	1 cut(s)	512
BciVI	GTATCC	1 cut(s)	123
BcnI	CCSGG	1 cut(s)	473
BcoDI	GTCTC	1 cut(s)	48
BfmI	CTRYAG	2 cut(s)	158, 330
BfuI	GTATCC	1 cut(s)	123
BisI	GCNGC	4 cut(s)	11, 457, 1077, 1080
BlsI	GCNGC	4 cut(s)	12, 458, 1078, 1081
Bme1390I	CCNGG	2 cut(s)	473, 512
BmgBI	CACGTC	1 cut(s)	1062
BmgT120I	GGNCC	1 cut(s)	213
BmiI	GGNNCC	1 cut(s)	177
BmrFI	CCNGG	2 cut(s)	473, 512
BmsI	GCATC	6 cut(s)	10, 214, 244, 449, 507, 703
BpiI	GAAGAC	1 cut(s)	72
BplI	GAGNNNNNCTC	2 cut(s)	898, 930
BpmI	CTGGAG	3 cut(s)	168, 533, 851
BpuEI	CTTGAG	2 cut(s)	932, 1025
BpuMI	CCSGG	1 cut(s)	473
BsaAI	YACGTR	1 cut(s)	368
BsaBI	GATNNNNATC	1 cut(s)	96
BsaJI	CCNNGG	2 cut(s)	216, 472
Bse1I	ACTGG	1 cut(s)	834
Bse8I	GATNNNNATC	1 cut(s)	96
BseBI	CCWGG	1 cut(s)	512
BseDI	CCNNGG	2 cut(s)	216, 472
BseJI	GATNNNNATC	1 cut(s)	96
BseMII	CTCAG	3 cut(s)	59, 582, 696
BseNI	ACTGG	1 cut(s)	834
BseRI	GAGGAG	1 cut(s)	721
BseXI	GCAGC	2 cut(s)	1063, 1066
BshFI	GGCC	2 cut(s)	13, 214
BsiHKAI	GWGCWC	1 cut(s)	794
BsiSI	CCGG	1 cut(s)	472
BsiWI	CGTACG	1 cut(s)	364
BsmAI	GTCTC	1 cut(s)	48
BsmI	GAATGC	1 cut(s)	820
BsnI	GGCC	2 cut(s)	13, 214
Bsp1286I	GDGCHC	1 cut(s)	794
Bsp143I	GATC	8 cut(s)	97, 152, 175, 390, 503, 881, 943, 970
BspACI	CCGC	2 cut(s)	10, 456
BspANI	GGCC	2 cut(s)	13, 214
BspCNI	CTCAG	3 cut(s)	58, 583, 695
BspHI	TCATGA	1 cut(s)	967
BspLI	GGNNCC	1 cut(s)	177
BspMAI	CTGCAG	1 cut(s)	162
BspPI	GGATC	5 cut(s)	170, 183, 511, 889, 965
BsrI	ACTGG	1 cut(s)	834
BssECI	CCNNGG	2 cut(s)	216, 472
BssMI	GATC	8 cut(s)	97, 152, 175, 390, 503, 881, 943, 970
BssT1I	CCWWGG	1 cut(s)	216
Bst2UI	CCWGG	1 cut(s)	512
Bst4CI	ACNGT	3 cut(s)	364, 383, 728
Bst6I	CTCTTC	1 cut(s)	381
BstAPI	GCANNNNNTGC	1 cut(s)	275
BstBAI	YACGTR	1 cut(s)	368
BstC8I	GCNNGC	2 cut(s)	571, 1095
BstDEI	CTNAG	4 cut(s)	45, 591, 682, 1065
BstEII	GGTNACC	1 cut(s)	479
BstKTI	GATC	8 cut(s)	100, 155, 178, 393, 506, 884, 946, 973
BstMAI	GTCTC	1 cut(s)	48
BstMBI	GATC	8 cut(s)	97, 152, 175, 390, 503, 881, 943, 970
BstMWI	GCNNNNNNNGC	2 cut(s)	275, 630
BstNI	CCWGG	1 cut(s)	512
BstNSI	RCATGY	3 cut(s)	693, 1059, 1097
BstPI	GGTNACC	1 cut(s)	479
BstSCI	CCNGG	2 cut(s)	471, 510
BstSFI	CTRYAG	2 cut(s)	158, 330
BstSNI	TACGTA	1 cut(s)	368
BstV1I	GCAGC	2 cut(s)	1063, 1066
BstV2I	GAAGAC	1 cut(s)	72
BstX2I	RGATCY	1 cut(s)	175
BstYI	RGATCY	1 cut(s)	175
BsuI	GTATCC	1 cut(s)	123
BsuRI	GGCC	2 cut(s)	13, 214
BtrI	CACGTC	1 cut(s)	1062
BtsIMutI	CAGTG	1 cut(s)	827
Cac8I	GCNNGC	2 cut(s)	571, 1095
CaiI	CAGNNNCTG	2 cut(s)	590, 722
CciI	TCATGA	1 cut(s)	967
Cfr13I	GGNCC	1 cut(s)	213
Csp6I	GTAC	2 cut(s)	365, 1053
CviAII	CATG	5 cut(s)	259, 690, 968, 1056, 1094
CviQI	GTAC	2 cut(s)	365, 1053
DdeI	CTNAG	4 cut(s)	45, 591, 682, 1065
DpnI	GATC	8 cut(s)	99, 154, 177, 392, 505, 883, 945, 972
DpnII	GATC	8 cut(s)	97, 152, 175, 390, 503, 881, 943, 970
EaeI	YGGCCR	1 cut(s)	11
Eam1104I	CTCTTC	1 cut(s)	381
EarI	CTCTTC	1 cut(s)	381
Eco105I	TACGTA	1 cut(s)	368
Eco130I	CCWWGG	1 cut(s)	216
Eco57I	CTGAAG	2 cut(s)	542, 887
Eco91I	GGTNACC	1 cut(s)	479
EcoO65I	GGTNACC	1 cut(s)	479
EcoRII	CCWGG	1 cut(s)	510
EcoT14I	CCWWGG	1 cut(s)	216
EcoT22I	ATGCAT	2 cut(s)	264, 1095
ErhI	CCWWGG	1 cut(s)	216
FaeI	CATG	5 cut(s)	262, 693, 971, 1059, 1097
FalI	AAGNNNNNCTT	2 cut(s)	641, 673
FatI	CATG	5 cut(s)	258, 689, 967, 1055, 1093
Fnu4HI	GCNGC	4 cut(s)	11, 457, 1077, 1080
Fsp4HI	GCNGC	4 cut(s)	11, 457, 1077, 1080
GluI	GCNGC	4 cut(s)	11, 457, 1077, 1080
GsuI	CTGGAG	3 cut(s)	168, 533, 851
HaeIII	GGCC	2 cut(s)	13, 214
HapII	CCGG	1 cut(s)	472
Hin1II	CATG	5 cut(s)	262, 693, 971, 1059, 1097
HindIII	AAGCTT	2 cut(s)	567, 1067
HinfI	GANTC	3 cut(s)	148, 599, 1042
HpaII	CCGG	1 cut(s)	472
HphI	GGTGA	2 cut(s)	233, 395
Hpy188I	TCNGA	8 cut(s)	75, 445, 543, 592, 685, 750, 906, 985
Hpy188III	TCNNGA	7 cut(s)	185, 206, 695, 767, 845, 968, 1039
Hpy99I	CGWCG	1 cut(s)	979
HpyAV	CCTTC	5 cut(s)	494, 517, 872, 911, 1094
HpyCH4III	ACNGT	3 cut(s)	364, 383, 728
HpyCH4IV	ACGT	2 cut(s)	367, 1061
HpyCH4V	TGCA	8 cut(s)	160, 262, 278, 624, 716, 1059, 1093, 1097
HpyF10VI	GCNNNNNNNGC	2 cut(s)	275, 630
HpyF3I	CTNAG	4 cut(s)	45, 591, 682, 1065
HpySE526I	ACGT	2 cut(s)	367, 1061
Hsp92II	CATG	5 cut(s)	262, 693, 971, 1059, 1097
Kzo9I	GATC	8 cut(s)	97, 152, 175, 390, 503, 881, 943, 970
LmnI	GCTCC	3 cut(s)	187, 823, 919
Lsp1109I	GCAGC	2 cut(s)	1063, 1066
LweI	GCATC	6 cut(s)	10, 214, 244, 449, 507, 703
MaeII	ACGT	2 cut(s)	367, 1061
MaeIII	GTNAC	7 cut(s)	3, 290, 322, 341, 479, 760, 1014
MalI	GATC	8 cut(s)	99, 154, 177, 392, 505, 883, 945, 972
MboI	GATC	8 cut(s)	97, 152, 175, 390, 503, 881, 943, 970
MboII	GAAGA	7 cut(s)	77, 92, 398, 440, 860, 941, 1037
MflI	RGATCY	1 cut(s)	175
MhlI	GDGCHC	1 cut(s)	794
Mph1103I	ATGCAT	2 cut(s)	264, 1095
MroXI	GAANNNNTTC	2 cut(s)	69, 900
MseI	TTAA	5 cut(s)	414, 578, 659, 839, 1071
MspI	CCGG	1 cut(s)	472
MspR9I	CCNGG	2 cut(s)	473, 512
Mva1269I	GAATGC	1 cut(s)	820
MvaI	CCWGG	1 cut(s)	512
MwoI	GCNNNNNNNGC	2 cut(s)	275, 630
NciI	CCSGG	1 cut(s)	473
NdeII	GATC	8 cut(s)	97, 152, 175, 390, 503, 881, 943, 970
NlaIII	CATG	5 cut(s)	262, 693, 971, 1059, 1097
NlaIV	GGNNCC	1 cut(s)	177
NmuCI	GTSAC	1 cut(s)	290
NsiI	ATGCAT	2 cut(s)	264, 1095
NspI	RCATGY	3 cut(s)	693, 1059, 1097
PaeI	GCATGC	1 cut(s)	1097
PagI	TCATGA	1 cut(s)	967
PciI	ACATGT	1 cut(s)	689
PctI	GAATGC	1 cut(s)	820
PdmI	GAANNNNTTC	2 cut(s)	69, 900
PfeI	GAWTC	3 cut(s)	148, 599, 1042
Pfl23II	CGTACG	1 cut(s)	364
PfoI	TCCNGGA	1 cut(s)	510
PkrI	GCNGC	4 cut(s)	12, 458, 1078, 1081
Ppu21I	YACGTR	1 cut(s)	368
PscI	ACATGT	1 cut(s)	689
Psp6I	CCWGG	1 cut(s)	510
PspEI	GGTNACC	1 cut(s)	479
PspGI	CCWGG	1 cut(s)	510
PspLI	CGTACG	1 cut(s)	364
PspN4I	GGNNCC	1 cut(s)	177
PspPI	GGNCC	1 cut(s)	213
PstI	CTGCAG	1 cut(s)	162
PstNI	CAGNNNCTG	2 cut(s)	590, 722
PsuI	RGATCY	1 cut(s)	175
RsaI	GTAC	2 cut(s)	366, 1054
RsaNI	GTAC	2 cut(s)	365, 1053
SaqAI	TTAA	5 cut(s)	414, 578, 659, 839, 1071
SatI	GCNGC	4 cut(s)	11, 457, 1077, 1080
Sau3AI	GATC	8 cut(s)	97, 152, 175, 390, 503, 881, 943, 970
Sau96I	GGNCC	1 cut(s)	213
ScrFI	CCNGG	2 cut(s)	473, 512
SduI	GDGCHC	1 cut(s)	794
SfaNI	GCATC	6 cut(s)	10, 214, 244, 449, 507, 703
SfcI	CTRYAG	2 cut(s)	158, 330
SmlI	CTYRAG	2 cut(s)	947, 1004
SmoI	CTYRAG	2 cut(s)	947, 1004
SnaBI	TACGTA	1 cut(s)	368
SphI	GCATGC	1 cut(s)	1097
SsiI	CCGC	2 cut(s)	10, 456
StyD4I	CCNGG	2 cut(s)	471, 510
StyI	CCWWGG	1 cut(s)	216
TaaI	ACNGT	3 cut(s)	364, 383, 728
TaiI	ACGT	2 cut(s)	370, 1064
TaqI	TCGA	2 cut(s)	63, 151
TatI	WGTACW	1 cut(s)	1052
TauI	GCSGC	2 cut(s)	13, 459
TfiI	GAWTC	3 cut(s)	148, 599, 1042
Tru1I	TTAA	5 cut(s)	414, 578, 659, 839, 1071
Tru9I	TTAA	5 cut(s)	414, 578, 659, 839, 1071
TscAI	CASTG	1 cut(s)	834
TseFI	GTSAC	1 cut(s)	290
TseI	GCWGC	2 cut(s)	1076, 1079
Tsp45I	GTSAC	1 cut(s)	290
TspDTI	ATGAA	2 cut(s)	450, 791
TspGWI	ACGGA	1 cut(s)	963
TspRI	CASTG	1 cut(s)	834
XapI	RAATTY	6 cut(s)	188, 285, 372, 487, 537, 580
XceI	RCATGY	3 cut(s)	693, 1059, 1097
XmnI	GAANNNNTTC	2 cut(s)	69, 900
Zsp2I	ATGCAT	2 cut(s)	264, 1095

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.