Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0010607

Physical Location & Seq

Genomic Coordinates Reverse (-)

47585469 .. 47587031

Gene Structure 1563 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019162

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGCCTACTCATGATCCGTTGGGTTCAGATGACATTTGGAAAGAACTTGAGAATTTGTTACTATGGTTGAGAGATGAGGTCAGGAATCTTCCAAGTACATGCACATCTAAGCTTAACGCTGCTGCTGACTTGATCAATATTTATGCATGCAGAAGGAACTACATTAGAATACGGGAATACAAACCAGTGAATTCACCGCCGGTATACATTAGTCCGCTTGACTTGGGGCCCAAGTACACTGACAAATCGGGAGCAGAGCCAGATTCTAGTATTGCTAGAGCAAGTAGGGATTGCTTGTCATTACCTGATAACGATTCCTCCTATGCCGAGATTTCAAAACCTTCACGGCCGCTTGTGTATGGTGCAAAGGCTGTCAAATGTATGCTTTCAAGGGTGGATGTGTCAAATACCAAGGACGGAAAGGCACAGATGAAAGAAGAAATTGGAGACGGGACAGAAGTTGAGGTTTCCAGTGATGAAGATGGATTTCAAGGCTCATGGTTTGCAGCCATTGTTGTCCAGGTATTGGGGAAGGTCAAATTTGTTGTTCAGTATAAGTGCTTAAAAACAGATGATGGTAAAGACTTCTTGACAGAAGAGATTGATGCACAGCACATAACGCCTTATCCGCTTGCAGTTGTTATGGTTGATTGTTATAGCACAATCAACCATAACAACTGCAGACAGACAATGTCTTATGTGCTCTGCTTCAATCTCTTCTGTCAAGAACTCTTTACCATCATCTGTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009791 GO:0009908 GO:0009987 GO:0010228 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019538 GO:0022414 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0036211 GO:0042054 GO:0042800 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048443 GO:0048466 GO:0048467 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0051276 GO:0051568 GO:0061458 GO:0071704 GO:0071840 GO:0090567 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SET

Protein Analysis

251

Amino Acids

28.07

Weight (kDa)

4.99

Isoelectric Point (pI)

47.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SDG2_C	PF19633	3 - 85	3.4e-29	Protein SET DOMAIN GROUP 2 C-terminal
SDG2_C	PF19633	83 - 139	3.2e-11	Protein SET DOMAIN GROUP 2 C-terminal
Agenet	PF05641	151 - 210	6.9e-18	Agenet domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010607)

Species	Orthologous Gene IDs
pyrus_communis	pycom09g02670 pycom17g08790
rosa_chinensis	RchiOBHm_Chr2g0131031 RchiOBHm_Chr2g0131041
rosa_laevigata	RLG00000019162 RLG00000019163
rosa_multiflora	Rmu_co8448607.1_g000001 Rmu_sc0003629.1_g000060 Rmu_sc0036661.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113280
rosa_rugosa	Rorug02G0294500.1 Rorug05G0580100
rosa_samantha	Rh2AG346900 Rh2BG354200 Rh2BG354300 Rh2CG332800 Rh2DG372300 Rh6BG135200
rosa_wichuraiana	Rw0G018960 Rw2G028120 Rw2G028160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	526
AccI	GTMKAC	1 cut(s)	204
AciI	CCGC	4 cut(s)	197, 215, 350, 629
AclWI	GGATC	1 cut(s)	8
AcoI	YGGCCR	1 cut(s)	347
AcsI	RAATTY	3 cut(s)	52, 190, 539
AfaI	GTAC	2 cut(s)	97, 236
AfiI	CCNNNNNNNGG	1 cut(s)	526
AgsI	TTSAA	4 cut(s)	336, 390, 491, 712
AjnI	CCWGG	1 cut(s)	519
AluBI	AGCT	1 cut(s)	112
AluI	AGCT	1 cut(s)	112
Alw21I	GWGCWC	1 cut(s)	705
Alw26I	GTCTC	1 cut(s)	441
AlwI	GGATC	1 cut(s)	8
AoxI	GGCC	2 cut(s)	227, 347
ApaI	GGGCCC	1 cut(s)	231
ApeKI	GCWGC	3 cut(s)	119, 122, 506
ApoI	RAATTY	3 cut(s)	52, 190, 539
AspS9I	GGNCC	2 cut(s)	227, 228
AsuHPI	GGTGA	1 cut(s)	186
BaeGI	GKGCMC	1 cut(s)	231
BanII	GRGCYC	1 cut(s)	231
Bbv12I	GWGCWC	1 cut(s)	705
BbvI	GCAGC	3 cut(s)	106, 109, 518
BccI	CCATC	3 cut(s)	476, 569, 746
BceAI	ACGGC	1 cut(s)	362
BciT130I	CCWGG	1 cut(s)	521
BclI	TGATCA	1 cut(s)	132
BcoDI	GTCTC	1 cut(s)	441
BfaI	CTAG	2 cut(s)	267, 276
BfmI	CTRYAG	1 cut(s)	679
BisI	GCNGC	4 cut(s)	120, 123, 350, 507
BlsI	GCNGC	4 cut(s)	121, 124, 351, 508
Bme1390I	CCNGG	1 cut(s)	521
BmgT120I	GGNCC	2 cut(s)	227, 228
BmiI	GGNNCC	2 cut(s)	228, 229
BmrFI	CCNGG	1 cut(s)	521
BmsI	GCATC	1 cut(s)	595
BpuEI	CTTGAG	1 cut(s)	68
BsaJI	CCNNGG	1 cut(s)	411
BsaXI	ACNNNNNCTCC	2 cut(s)	302, 332
Bsc4I	CCNNNNNNNGG	1 cut(s)	526
Bse118I	RCCGGY	1 cut(s)	199
Bse1I	ACTGG	2 cut(s)	185, 471
BseBI	CCWGG	1 cut(s)	521
BseDI	CCNNGG	1 cut(s)	411
BseGI	GGATG	1 cut(s)	403
BseLI	CCNNNNNNNGG	1 cut(s)	526
BseNI	ACTGG	2 cut(s)	185, 471
BseSI	GKGCMC	1 cut(s)	231
BseX3I	CGGCCG	1 cut(s)	347
BseXI	GCAGC	3 cut(s)	106, 109, 518
Bsh1285I	CGRYCG	1 cut(s)	350
BshFI	GGCC	2 cut(s)	229, 349
BsiEI	CGRYCG	1 cut(s)	350
BsiHKAI	GWGCWC	1 cut(s)	705
BsiSI	CCGG	1 cut(s)	200
BslFI	GGGAC	1 cut(s)	466
BslI	CCNNNNNNNGG	1 cut(s)	526
BsmAI	GTCTC	1 cut(s)	441
BsmBI	CGTCTC	1 cut(s)	441
BsmFI	GGGAC	1 cut(s)	466
BsnI	GGCC	2 cut(s)	229, 349
Bsp120I	GGGCCC	1 cut(s)	227
Bsp1286I	GDGCHC	2 cut(s)	231, 705
Bsp143I	GATC	2 cut(s)	13, 132
BspACI	CCGC	4 cut(s)	197, 215, 350, 629
BspANI	GGCC	2 cut(s)	229, 349
BspHI	TCATGA	1 cut(s)	10
BspLI	GGNNCC	2 cut(s)	228, 229
BspMAI	CTGCAG	1 cut(s)	683
BspPI	GGATC	1 cut(s)	8
BsrFI	RCCGGY	1 cut(s)	199
BsrI	ACTGG	2 cut(s)	185, 471
BssAI	RCCGGY	1 cut(s)	199
BssECI	CCNNGG	1 cut(s)	411
BssMI	GATC	2 cut(s)	13, 132
BssNAI	GTATAC	1 cut(s)	205
BssT1I	CCWWGG	1 cut(s)	411
Bst1107I	GTATAC	1 cut(s)	205
Bst2UI	CCWGG	1 cut(s)	521
Bst6I	CTCTTC	2 cut(s)	591, 722
BstC8I	GCNNGC	2 cut(s)	148, 633
BstDEI	CTNAG	1 cut(s)	108
BstF5I	GGATG	1 cut(s)	403
BstKTI	GATC	2 cut(s)	16, 135
BstMAI	GTCTC	1 cut(s)	441
BstMBI	GATC	2 cut(s)	13, 132
BstMCI	CGRYCG	1 cut(s)	350
BstMWI	GCNNNNNNNGC	2 cut(s)	619, 628
BstNI	CCWGG	1 cut(s)	521
BstNSI	RCATGY	2 cut(s)	102, 150
BstSCI	CCNGG	1 cut(s)	519
BstSFI	CTRYAG	1 cut(s)	679
BstSLI	GKGCMC	1 cut(s)	231
BstV1I	GCAGC	3 cut(s)	106, 109, 518
BstZ17I	GTATAC	1 cut(s)	205
BstZI	CGGCCG	1 cut(s)	347
BsuRI	GGCC	2 cut(s)	229, 349
BtsCI	GGATG	1 cut(s)	403
BtsIMutI	CAGTG	3 cut(s)	192, 237, 478
Cac8I	GCNNGC	2 cut(s)	148, 633
CciI	TCATGA	1 cut(s)	10
Cfr10I	RCCGGY	1 cut(s)	199
Cfr13I	GGNCC	2 cut(s)	227, 228
Csp6I	GTAC	2 cut(s)	96, 235
CviAII	CATG	4 cut(s)	11, 99, 147, 498
CviJI	RGCY	7 cut(s)	112, 229, 259, 349, 371, 495, 509
CviKI_1	RGCY	7 cut(s)	112, 229, 259, 349, 371, 495, 509
CviQI	GTAC	2 cut(s)	96, 235
DdeI	CTNAG	1 cut(s)	108
DpnI	GATC	2 cut(s)	15, 134
DpnII	GATC	2 cut(s)	13, 132
EaeI	YGGCCR	1 cut(s)	347
EagI	CGGCCG	1 cut(s)	347
Eam1104I	CTCTTC	2 cut(s)	591, 722
EarI	CTCTTC	2 cut(s)	591, 722
EclXI	CGGCCG	1 cut(s)	347
Eco130I	CCWWGG	1 cut(s)	411
Eco24I	GRGCYC	1 cut(s)	231
Eco52I	CGGCCG	1 cut(s)	347
EcoO109I	RGGNCCY	1 cut(s)	227
EcoRI	GAATTC	1 cut(s)	190
EcoRII	CCWGG	1 cut(s)	519
EcoT14I	CCWWGG	1 cut(s)	411
EcoT22I	ATGCAT	1 cut(s)	148
EcoT38I	GRGCYC	1 cut(s)	231
ErhI	CCWWGG	1 cut(s)	411
Esp3I	CGTCTC	1 cut(s)	441
FaeI	CATG	4 cut(s)	14, 102, 150, 501
FaqI	GGGAC	1 cut(s)	466
FatI	CATG	4 cut(s)	10, 98, 146, 497
FbaI	TGATCA	1 cut(s)	132
FblI	GTMKAC	1 cut(s)	204
Fnu4HI	GCNGC	4 cut(s)	120, 123, 350, 507
FokI	GGATG	1 cut(s)	410
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	4 cut(s)	120, 123, 350, 507
FspBI	CTAG	2 cut(s)	267, 276
GluI	GCNGC	4 cut(s)	120, 123, 350, 507
HaeIII	GGCC	2 cut(s)	229, 349
HapII	CCGG	1 cut(s)	200
Hin1II	CATG	4 cut(s)	14, 102, 150, 501
HindIII	AAGCTT	1 cut(s)	110
HinfI	GANTC	3 cut(s)	85, 263, 314
HpaII	CCGG	1 cut(s)	200
HphI	GGTGA	1 cut(s)	186
Hpy166II	GTNNAC	2 cut(s)	205, 237
Hpy188I	TCNGA	1 cut(s)	28
Hpy188III	TCNNGA	5 cut(s)	11, 82, 249, 589, 725
Hpy8I	GTNNAC	2 cut(s)	205, 237
HpyAV	CCTTC	3 cut(s)	147, 351, 526
HpyCH4V	TGCA	8 cut(s)	102, 146, 150, 365, 506, 608, 635, 681
HpyF10VI	GCNNNNNNNGC	2 cut(s)	619, 628
HpyF3I	CTNAG	1 cut(s)	108
Hsp92II	CATG	4 cut(s)	14, 102, 150, 501
Ksp22I	TGATCA	1 cut(s)	132
Kzo9I	GATC	2 cut(s)	13, 132
LmnI	GCTCC	1 cut(s)	251
LpnPI	CCDG	8 cut(s)	67, 198, 213, 273, 318, 484, 506, 533
Lsp1109I	GCAGC	3 cut(s)	106, 109, 518
LweI	GCATC	1 cut(s)	595
MaeI	CTAG	2 cut(s)	267, 276
MaeIII	GTNAC	1 cut(s)	57
MalI	GATC	2 cut(s)	15, 134
MboI	GATC	2 cut(s)	13, 132
MboII	GAAGA	5 cut(s)	80, 449, 491, 608, 709
MhlI	GDGCHC	2 cut(s)	231, 705
MluCI	AATT	4 cut(s)	52, 190, 441, 539
MnlI	CCTC	3 cut(s)	70, 328, 457
Mph1103I	ATGCAT	1 cut(s)	148
MseI	TTAA	3 cut(s)	114, 563, 751
MspI	CCGG	1 cut(s)	200
MspR9I	CCNGG	1 cut(s)	521
MvaI	CCWGG	1 cut(s)	521
MwoI	GCNNNNNNNGC	2 cut(s)	619, 628
NdeII	GATC	2 cut(s)	13, 132
NlaIII	CATG	4 cut(s)	14, 102, 150, 501
NlaIV	GGNNCC	2 cut(s)	228, 229
NmeAIII	GCCGAG	1 cut(s)	352
NsiI	ATGCAT	1 cut(s)	148
NspI	RCATGY	2 cut(s)	102, 150
PaeI	GCATGC	1 cut(s)	150
PagI	TCATGA	1 cut(s)	10
PfeI	GAWTC	3 cut(s)	85, 263, 314
PflFI	GACNNNGTC	1 cut(s)	691
PflMI	CCANNNNNTGG	1 cut(s)	526
PkrI	GCNGC	4 cut(s)	121, 124, 351, 508
Psp6I	CCWGG	1 cut(s)	519
PspGI	CCWGG	1 cut(s)	519
PspN4I	GGNNCC	2 cut(s)	228, 229
PspOMI	GGGCCC	1 cut(s)	227
PspPI	GGNCC	2 cut(s)	227, 228
PstI	CTGCAG	1 cut(s)	683
PsyI	GACNNNGTC	1 cut(s)	691
RsaI	GTAC	2 cut(s)	97, 236
RsaNI	GTAC	2 cut(s)	96, 235
SaqAI	TTAA	3 cut(s)	114, 563, 751
SatI	GCNGC	4 cut(s)	120, 123, 350, 507
Sau3AI	GATC	2 cut(s)	13, 132
Sau96I	GGNCC	2 cut(s)	227, 228
ScrFI	CCNGG	1 cut(s)	521
SduI	GDGCHC	2 cut(s)	231, 705
SetI	ASST	7 cut(s)	81, 114, 307, 343, 468, 525, 537
SfaNI	GCATC	1 cut(s)	595
SfcI	CTRYAG	1 cut(s)	679
SmlI	CTYRAG	1 cut(s)	47
SmoI	CTYRAG	1 cut(s)	47
SphI	GCATGC	1 cut(s)	150
Sse9I	AATT	4 cut(s)	52, 190, 441, 539
SsiI	CCGC	4 cut(s)	197, 215, 350, 629
SspI	AATATT	1 cut(s)	139
SspMI	CTAG	2 cut(s)	267, 276
StyD4I	CCNGG	1 cut(s)	519
StyI	CCWWGG	1 cut(s)	411
TasI	AATT	4 cut(s)	52, 190, 441, 539
TatI	WGTACW	2 cut(s)	95, 234
TauI	GCSGC	1 cut(s)	352
TfiI	GAWTC	3 cut(s)	85, 263, 314
Tru1I	TTAA	3 cut(s)	114, 563, 751
Tru9I	TTAA	3 cut(s)	114, 563, 751
TscAI	CASTG	3 cut(s)	192, 244, 478
TseI	GCWGC	3 cut(s)	119, 122, 506
TspDTI	ATGAA	2 cut(s)	446, 492
TspGWI	ACGGA	2 cut(s)	6, 432
TspRI	CASTG	3 cut(s)	192, 244, 478
Tth111I	GACNNNGTC	1 cut(s)	691
Van91I	CCANNNNNTGG	1 cut(s)	526
XapI	RAATTY	3 cut(s)	52, 190, 539
XceI	RCATGY	2 cut(s)	102, 150
XmiI	GTMKAC	1 cut(s)	204
XspI	CTAG	2 cut(s)	267, 276
Zsp2I	ATGCAT	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.