Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0010607

Physical Location & Seq

Genomic Coordinates Reverse (-)

43802269 .. 43805871

Gene Structure 3603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG332800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1335 bp

ATGAGAAGCAAGATGGGATTCGATCTCTGCAGAAAAATAGGTGATTATGATGGGTATGATTTAGTTGTTGTTGATGCCATGCATAAAGCAACCTATGCAAGTAGAATTTGTCACTTGTGCCGACCTAATTGTGAAGCAAAAGTTACTGCTGTAGATGGTCGTTACCAGATTGGAATCTACACTGTACGTAAAATTCAATACGGTGAAGAGATCACATTGGACTACAACTCTATTAAGGAGAGTAAGGAAGAATATGAAGCATCAGATTGTTTGTGCGGCAGTCAAGTTTGCCGGGGAGGTTACCTGAATTTGATAGGTGAAGGATCATTCCTGGAGATTCTGAAGGATTGTCATAAAATTCTGAATTGTCATCGTCTAATGCTGGAAGCTTGCGAGTTAAATTCAGTATCTGAGGTGGATTCACTTGACCTATTGAGTGATTGCATATTCAGCTTGTTTGGGGAGGTAAAGCACAACTTAAAAGAAAAGAACAATTATTGCTCAGATACATGTCGTGAGGTTGAGAGGAGTGATGCGGAGGCTGACGGTGTGTTCAAACAAAGGGTTCAGAGTTTGGCTGTTACTCTTGACAAGGTGAAGTATGTTATGTGCTCTGTATTTGGCAACCCAAAGAATGCTCCACCTCCACTGGAGAGGTTAAGTCCAGAAGAGGCTGTTGGCTTTCTATGGGAGGGAGAAGGATCATTTGTTGAGGAAGTCCTTCAGAGCATTGCTCCTAATGTGGAGGAACAATTGCTAAATGATCTCAAGTCCCAAATGCCTTCTCATGATCCGTCGGGTTCAGATGACATTTGGAAAGAACTTGAGATGAATTCACCGCCGGTATACATTAGTCCGCTTGACTTGGGGCCCAAGTACACTGACAAATCGGGGGCAGGTTTTCAGGAGTATTGCAAGACTTTTGGGGAGAATTATTGTTTATGGCAGCTAATTTTTTGCTATAATCAGCCTAATGCAGAGCCAGATTGTAGTATTGCTAGAGCAAGTAGGGATTGCTTATCATTACCTGATAACGATTCCTCCTATGCCGAGATTTCGGAACCTTCATGGCCGCTTGTGTATGGTCCAAAGGCTGTCAAATGTATGCTTTCGAGGGTGGACGTGTCAAATACCAAGGACGGAAAGGCACAGATGAAGGATGAAATTGGAGAAGGGACAGAAGTTGAGGTTTCCAGTGATGAAGATGGATTTCAAGGCTCATGGTTTGCAGCCACTGTTGTCCAGGTGCTGGGAAAGGTCAAATTTGTTGTTCAGTATAAGTGCTTAAAAACAGATGATGGTAAAGAGTTCTTGACAGAAGAGATTGATGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009791 GO:0009908 GO:0009987 GO:0010228 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019538 GO:0022414 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0036211 GO:0042054 GO:0042800 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048443 GO:0048466 GO:0048467 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0051276 GO:0051568 GO:0061458 GO:0071704 GO:0071840 GO:0090567 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SET

Protein Analysis

444

Amino Acids

49.67

Weight (kDa)

4.64

Isoelectric Point (pI)

42.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SET	PF00856	23 - 76	7e-10	SET domain
SDG2_C	PF19633	87 - 144	1.7e-20	Protein SET DOMAIN GROUP 2 C-terminal
SDG2_C	PF19633	156 - 275	1.6e-44	Protein SET DOMAIN GROUP 2 C-terminal
SDG2_C	PF19633	277 - 380	1.3e-35	Protein SET DOMAIN GROUP 2 C-terminal
Agenet	PF05641	392 - 444	2.6e-15	Agenet domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010607)

Species	Orthologous Gene IDs
pyrus_communis	pycom09g02670 pycom17g08790
rosa_chinensis	RchiOBHm_Chr2g0131031 RchiOBHm_Chr2g0131041
rosa_laevigata	RLG00000019162 RLG00000019163
rosa_multiflora	Rmu_co8448607.1_g000001 Rmu_sc0003629.1_g000060 Rmu_sc0036661.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113280
rosa_rugosa	Rorug02G0294500.1 Rorug05G0580100
rosa_samantha	Rh2AG346900 Rh2BG354200 Rh2BG354300 Rh2CG332800 Rh2DG372300 Rh6BG135200
rosa_wichuraiana	Rw0G018960 Rw2G028120 Rw2G028160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	887
AccB7I	CCANNNNNTGG	1 cut(s)	1249
AccI	GTMKAC	1 cut(s)	846
AciI	CCGC	5 cut(s)	276, 536, 839, 857, 1073
AclWI	GGATC	3 cut(s)	331, 709, 785
AcoI	YGGCCR	1 cut(s)	1070
AcsI	RAATTY	7 cut(s)	105, 192, 307, 357, 400, 832, 1262
AcuI	CTGAAG	2 cut(s)	362, 707
AfaI	GTAC	2 cut(s)	186, 878
AfiI	CCNNNNNNNGG	1 cut(s)	1249
AflIII	ACRYGT	2 cut(s)	509, 1122
AgsI	TTSAA	3 cut(s)	197, 556, 1214
AjiI	CACGTC	1 cut(s)	1123
AjnI	CCWGG	2 cut(s)	330, 1242
AjuI	GAANNNNNNNTTGG	2 cut(s)	660, 692
AluBI	AGCT	3 cut(s)	389, 453, 949
AluI	AGCT	3 cut(s)	389, 453, 949
Alw21I	GWGCWC	1 cut(s)	614
AlwI	GGATC	3 cut(s)	331, 709, 785
AlwNI	CAGNNNCTG	3 cut(s)	410, 1235, 1249
AoxI	GGCC	2 cut(s)	869, 1070
ApaI	GGGCCC	1 cut(s)	873
ApeKI	GCWGC	2 cut(s)	946, 1229
ApoI	RAATTY	7 cut(s)	105, 192, 307, 357, 400, 832, 1262
Asp700I	GAANNNNTTC	1 cut(s)	720
AspS9I	GGNCC	3 cut(s)	869, 870, 1085
AsuC2I	CCSGG	1 cut(s)	293
AsuHPI	GGTGA	5 cut(s)	53, 215, 329, 607, 828
AvaII	GGWCC	1 cut(s)	1085
BaeGI	GKGCMC	1 cut(s)	873
BanII	GRGCYC	1 cut(s)	873
Bbv12I	GWGCWC	1 cut(s)	614
BbvI	GCAGC	2 cut(s)	958, 1241
BccI	CCATC	5 cut(s)	7, 44, 149, 1199, 1292
BciT130I	CCWGG	2 cut(s)	332, 1244
BcnI	CCSGG	1 cut(s)	293
BfaI	CTAG	1 cut(s)	999
BfmI	CTRYAG	2 cut(s)	28, 150
BfuAI	ACCTGC	1 cut(s)	887
BisI	GCNGC	4 cut(s)	277, 947, 1073, 1230
BlsI	GCNGC	4 cut(s)	278, 948, 1074, 1231
Bme1390I	CCNGG	3 cut(s)	293, 332, 1244
Bme18I	GGWCC	1 cut(s)	1085
BmgBI	CACGTC	1 cut(s)	1123
BmgT120I	GGNCC	3 cut(s)	869, 870, 1085
BmiI	GGNNCC	3 cut(s)	870, 871, 1062
BmrFI	CCNGG	3 cut(s)	293, 332, 1244
BmsI	GCATC	4 cut(s)	64, 269, 523, 1318
BplI	GAGNNNNNCTC	2 cut(s)	718, 750
BpmI	CTGGAG	2 cut(s)	353, 671
BpuEI	CTTGAG	2 cut(s)	752, 845
BpuMI	CCSGG	1 cut(s)	293
BsaAI	YACGTR	1 cut(s)	188
BsaBI	GATNNNNATC	1 cut(s)	173
BsaJI	CCNNGG	2 cut(s)	292, 1134
BsaXI	ACNNNNNCTCC	2 cut(s)	1025, 1055
Bsc4I	CCNNNNNNNGG	1 cut(s)	1249
Bse118I	RCCGGY	1 cut(s)	841
Bse1I	ACTGG	2 cut(s)	654, 1194
Bse3DI	GCAATG	1 cut(s)	729
Bse8I	GATNNNNATC	1 cut(s)	173
BseBI	CCWGG	2 cut(s)	332, 1244
BseDI	CCNNGG	2 cut(s)	292, 1134
BseGI	GGATG	1 cut(s)	1165
BseJI	GATNNNNATC	1 cut(s)	173
BseLI	CCNNNNNNNGG	1 cut(s)	1249
BseMI	GCAATG	1 cut(s)	729
BseMII	CTCAG	2 cut(s)	402, 516
BseNI	ACTGG	2 cut(s)	654, 1194
BseRI	GAGGAG	1 cut(s)	541
BseSI	GKGCMC	1 cut(s)	873
BseXI	GCAGC	2 cut(s)	958, 1241
BseYI	CCCAGC	1 cut(s)	1249
BshFI	GGCC	2 cut(s)	871, 1072
BsiHKAI	GWGCWC	1 cut(s)	614
BsiSI	CCGG	2 cut(s)	292, 842
BslFI	GGGAC	2 cut(s)	757, 1189
BslI	CCNNNNNNNGG	1 cut(s)	1249
BsmFI	GGGAC	2 cut(s)	757, 1189
BsmI	GAATGC	1 cut(s)	640
BsnI	GGCC	2 cut(s)	871, 1072
Bsp120I	GGGCCC	1 cut(s)	869
Bsp1286I	GDGCHC	2 cut(s)	614, 873
Bsp143I	GATC	6 cut(s)	22, 210, 323, 701, 763, 790
BspACI	CCGC	5 cut(s)	276, 536, 839, 857, 1073
BspANI	GGCC	2 cut(s)	871, 1072
BspCNI	CTCAG	2 cut(s)	403, 515
BspHI	TCATGA	1 cut(s)	787
BspLI	GGNNCC	3 cut(s)	870, 871, 1062
BspMAI	CTGCAG	1 cut(s)	32
BspMI	ACCTGC	1 cut(s)	887
BspPI	GGATC	3 cut(s)	331, 709, 785
BsrDI	GCAATG	1 cut(s)	729
BsrFI	RCCGGY	1 cut(s)	841
BsrI	ACTGG	2 cut(s)	654, 1194
BssAI	RCCGGY	1 cut(s)	841
BssECI	CCNNGG	2 cut(s)	292, 1134
BssMI	GATC	6 cut(s)	22, 210, 323, 701, 763, 790
BssNAI	GTATAC	1 cut(s)	847
BssT1I	CCWWGG	1 cut(s)	1134
Bst1107I	GTATAC	1 cut(s)	847
Bst2UI	CCWGG	2 cut(s)	332, 1244
Bst4CI	ACNGT	4 cut(s)	184, 203, 548, 1237
Bst6I	CTCTTC	3 cut(s)	201, 663, 1314
BstAPI	GCANNNNNTGC	1 cut(s)	95
BstBAI	YACGTR	1 cut(s)	188
BstC8I	GCNNGC	1 cut(s)	391
BstDEI	CTNAG	2 cut(s)	411, 502
BstEII	GGTNACC	1 cut(s)	299
BstF5I	GGATG	1 cut(s)	1165
BstKTI	GATC	6 cut(s)	25, 213, 326, 704, 766, 793
BstMBI	GATC	6 cut(s)	22, 210, 323, 701, 763, 790
BstMWI	GCNNNNNNNGC	2 cut(s)	95, 450
BstNI	CCWGG	2 cut(s)	332, 1244
BstNSI	RCATGY	1 cut(s)	513
BstPI	GGTNACC	1 cut(s)	299
BstSCI	CCNGG	3 cut(s)	291, 330, 1242
BstSFI	CTRYAG	2 cut(s)	28, 150
BstSLI	GKGCMC	1 cut(s)	873
BstSNI	TACGTA	1 cut(s)	188
BstV1I	GCAGC	2 cut(s)	958, 1241
BstZ17I	GTATAC	1 cut(s)	847
BsuRI	GGCC	2 cut(s)	871, 1072
BtrI	CACGTC	1 cut(s)	1123
BtsCI	GGATG	1 cut(s)	1165
BtsIMutI	CAGTG	5 cut(s)	180, 647, 879, 1201, 1233
BveI	ACCTGC	1 cut(s)	887
Cac8I	GCNNGC	1 cut(s)	391
CaiI	CAGNNNCTG	3 cut(s)	410, 1235, 1249
CciI	TCATGA	1 cut(s)	787
Cfr10I	RCCGGY	1 cut(s)	841
Cfr13I	GGNCC	3 cut(s)	869, 870, 1085
Csp6I	GTAC	2 cut(s)	185, 877
CviAII	CATG	5 cut(s)	79, 510, 788, 1068, 1221
CviQI	GTAC	2 cut(s)	185, 877
DdeI	CTNAG	2 cut(s)	411, 502
DpnI	GATC	6 cut(s)	24, 212, 325, 703, 765, 792
DpnII	GATC	6 cut(s)	22, 210, 323, 701, 763, 790
EaeI	YGGCCR	1 cut(s)	1070
Eam1104I	CTCTTC	3 cut(s)	201, 663, 1314
EarI	CTCTTC	3 cut(s)	201, 663, 1314
Eco105I	TACGTA	1 cut(s)	188
Eco130I	CCWWGG	1 cut(s)	1134
Eco24I	GRGCYC	1 cut(s)	873
Eco47I	GGWCC	1 cut(s)	1085
Eco57I	CTGAAG	2 cut(s)	362, 707
Eco91I	GGTNACC	1 cut(s)	299
EcoO109I	RGGNCCY	1 cut(s)	869
EcoO65I	GGTNACC	1 cut(s)	299
EcoRI	GAATTC	1 cut(s)	832
EcoRII	CCWGG	2 cut(s)	330, 1242
EcoT14I	CCWWGG	1 cut(s)	1134
EcoT22I	ATGCAT	2 cut(s)	84, 1333
EcoT38I	GRGCYC	1 cut(s)	873
ErhI	CCWWGG	1 cut(s)	1134
FaeI	CATG	5 cut(s)	82, 513, 791, 1071, 1224
FalI	AAGNNNNNCTT	2 cut(s)	461, 493
FaqI	GGGAC	2 cut(s)	757, 1189
FatI	CATG	5 cut(s)	78, 509, 787, 1067, 1220
FblI	GTMKAC	1 cut(s)	846
Fnu4HI	GCNGC	4 cut(s)	277, 947, 1073, 1230
FokI	GGATG	1 cut(s)	1172
FriOI	GRGCYC	1 cut(s)	873
Fsp4HI	GCNGC	4 cut(s)	277, 947, 1073, 1230
FspBI	CTAG	1 cut(s)	999
GluI	GCNGC	4 cut(s)	277, 947, 1073, 1230
GsaI	CCCAGC	1 cut(s)	1253
GsuI	CTGGAG	2 cut(s)	353, 671
HaeIII	GGCC	2 cut(s)	871, 1072
HapII	CCGG	2 cut(s)	292, 842
Hin1II	CATG	5 cut(s)	82, 513, 791, 1071, 1224
HindIII	AAGCTT	1 cut(s)	387
HinfI	GANTC	5 cut(s)	18, 174, 337, 419, 1037
HpaII	CCGG	2 cut(s)	292, 842
HphI	GGTGA	5 cut(s)	53, 215, 329, 607, 828
Hpy166II	GTNNAC	3 cut(s)	847, 879, 1120
Hpy188I	TCNGA	9 cut(s)	265, 342, 363, 412, 505, 570, 726, 805, 1060
Hpy188III	TCNNGA	6 cut(s)	515, 587, 665, 788, 905, 1312
Hpy8I	GTNNAC	3 cut(s)	847, 879, 1120
Hpy99I	CGWCG	1 cut(s)	799
HpyAV	CCTTC	8 cut(s)	314, 337, 692, 731, 792, 1074, 1150, 1166
HpyCH4III	ACNGT	4 cut(s)	184, 203, 548, 1237
HpyCH4IV	ACGT	2 cut(s)	187, 1122
HpyCH4V	TGCA	8 cut(s)	30, 82, 98, 444, 915, 977, 1229, 1331
HpyF10VI	GCNNNNNNNGC	2 cut(s)	95, 450
HpyF3I	CTNAG	2 cut(s)	411, 502
HpySE526I	ACGT	2 cut(s)	187, 1122
Hsp92II	CATG	5 cut(s)	82, 513, 791, 1071, 1224
Kzo9I	GATC	6 cut(s)	22, 210, 323, 701, 763, 790
LmnI	GCTCC	2 cut(s)	643, 739
Lsp1109I	GCAGC	2 cut(s)	958, 1241
LweI	GCATC	4 cut(s)	64, 269, 523, 1318
MaeI	CTAG	1 cut(s)	999
MaeII	ACGT	2 cut(s)	187, 1122
MaeIII	GTNAC	5 cut(s)	110, 142, 161, 299, 580
MalI	GATC	6 cut(s)	24, 212, 325, 703, 765, 792
MboI	GATC	6 cut(s)	22, 210, 323, 701, 763, 790
MboII	GAAGA	5 cut(s)	218, 260, 680, 1214, 1331
MfeI	CAATTG	1 cut(s)	752
MhlI	GDGCHC	2 cut(s)	614, 873
Mph1103I	ATGCAT	2 cut(s)	84, 1333
MroXI	GAANNNNTTC	1 cut(s)	720
MseI	TTAA	5 cut(s)	234, 398, 479, 659, 1286
MspI	CCGG	2 cut(s)	292, 842
MspR9I	CCNGG	3 cut(s)	293, 332, 1244
MunI	CAATTG	1 cut(s)	752
Mva1269I	GAATGC	1 cut(s)	640
MvaI	CCWGG	2 cut(s)	332, 1244
MwoI	GCNNNNNNNGC	2 cut(s)	95, 450
NciI	CCSGG	1 cut(s)	293
NdeII	GATC	6 cut(s)	22, 210, 323, 701, 763, 790
NlaIII	CATG	5 cut(s)	82, 513, 791, 1071, 1224
NlaIV	GGNNCC	3 cut(s)	870, 871, 1062
NmeAIII	GCCGAG	1 cut(s)	1075
NmuCI	GTSAC	1 cut(s)	110
NsiI	ATGCAT	2 cut(s)	84, 1333
NspI	RCATGY	1 cut(s)	513
PagI	TCATGA	1 cut(s)	787
PciI	ACATGT	1 cut(s)	509
PctI	GAATGC	1 cut(s)	640
PdmI	GAANNNNTTC	1 cut(s)	720
PfeI	GAWTC	5 cut(s)	18, 174, 337, 419, 1037
PflMI	CCANNNNNTGG	1 cut(s)	1249
PfoI	TCCNGGA	1 cut(s)	330
PkrI	GCNGC	4 cut(s)	278, 948, 1074, 1231
Ppu21I	YACGTR	1 cut(s)	188
PscI	ACATGT	1 cut(s)	509
Psp6I	CCWGG	2 cut(s)	330, 1242
PspEI	GGTNACC	1 cut(s)	299
PspFI	CCCAGC	1 cut(s)	1249
PspGI	CCWGG	2 cut(s)	330, 1242
PspN4I	GGNNCC	3 cut(s)	870, 871, 1062
PspOMI	GGGCCC	1 cut(s)	869
PspPI	GGNCC	3 cut(s)	869, 870, 1085
PstI	CTGCAG	1 cut(s)	32
PstNI	CAGNNNCTG	3 cut(s)	410, 1235, 1249
RsaI	GTAC	2 cut(s)	186, 878
RsaNI	GTAC	2 cut(s)	185, 877
SaqAI	TTAA	5 cut(s)	234, 398, 479, 659, 1286
SatI	GCNGC	4 cut(s)	277, 947, 1073, 1230
Sau3AI	GATC	6 cut(s)	22, 210, 323, 701, 763, 790
Sau96I	GGNCC	3 cut(s)	869, 870, 1085
ScrFI	CCNGG	3 cut(s)	293, 332, 1244
SduI	GDGCHC	2 cut(s)	614, 873
SfaNI	GCATC	4 cut(s)	64, 269, 523, 1318
SfcI	CTRYAG	2 cut(s)	28, 150
SinI	GGWCC	1 cut(s)	1085
SmlI	CTYRAG	2 cut(s)	767, 824
SmoI	CTYRAG	2 cut(s)	767, 824
SnaBI	TACGTA	1 cut(s)	188
SsiI	CCGC	5 cut(s)	276, 536, 839, 857, 1073
SspMI	CTAG	1 cut(s)	999
StyD4I	CCNGG	3 cut(s)	291, 330, 1242
StyI	CCWWGG	1 cut(s)	1134
TaaI	ACNGT	4 cut(s)	184, 203, 548, 1237
TaiI	ACGT	2 cut(s)	190, 1125
TaqI	TCGA	2 cut(s)	21, 1112
TatI	WGTACW	1 cut(s)	876
TauI	GCSGC	2 cut(s)	279, 1075
TfiI	GAWTC	5 cut(s)	18, 174, 337, 419, 1037
Tru1I	TTAA	5 cut(s)	234, 398, 479, 659, 1286
Tru9I	TTAA	5 cut(s)	234, 398, 479, 659, 1286
TscAI	CASTG	5 cut(s)	187, 654, 886, 1201, 1240
TseFI	GTSAC	1 cut(s)	110
TseI	GCWGC	2 cut(s)	946, 1229
Tsp45I	GTSAC	1 cut(s)	110
TspDTI	ATGAA	6 cut(s)	270, 845, 1056, 1169, 1176, 1215
TspGWI	ACGGA	2 cut(s)	783, 1155
TspRI	CASTG	5 cut(s)	187, 654, 886, 1201, 1240
Van91I	CCANNNNNTGG	1 cut(s)	1249
VpaK11BI	GGWCC	1 cut(s)	1085
XapI	RAATTY	7 cut(s)	105, 192, 307, 357, 400, 832, 1262
XceI	RCATGY	1 cut(s)	513
XmiI	GTMKAC	1 cut(s)	846
XmnI	GAANNNNTTC	1 cut(s)	720
XspI	CTAG	1 cut(s)	999
Zsp2I	ATGCAT	2 cut(s)	84, 1333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.