RLG00000019163

Histone-lysine N-methyltransferase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
47587104 .. 47588318
1215 bp
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UTR
Exon/CDS
Intron
RLM00000019163

Sequence Viewer

Length: 423 bp
ATGGGATTTGCTCCAGAATTTTACATCTTTTATCTTGAAAGGCCCAAGGGTGATGCTGATGGGTATGATTTAGTTCTTGTTGATGCCATGCATAAACCAACCTATGCAAGTAGAATTTGTCACTTGTGCCGACCTAATTGTGAAGCAAAAGTTACTGCTGTAGATGGTCGTTACCAGATTGGAATCTGCACTGTATGCAAAATTCAATACCGTGAAGAGATCACATTGGACTACAACTCTATTAAGAAGAGTAAGGAATTGAAGAATATGAAGCATCAGATTGTTTGTGCGGCAGTCAAGTTTTCCGGGGAGGTGAAGTATGTTATGTGCTCTGTATTTGGCAACCTAAAGAATGCTCCACCTCCACTGGAGAGGTTAAGTCCAGAAGAAGCAGTTGGCTTTCTATGGGAGGGAGAAGGATAA

Protein Analysis

141

Amino Acids

15.83

Weight (kDa)

6.81

Isoelectric Point (pI)

36.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SET PF00856 25 - 79 8e-08 SET domain
SDG2_C PF19633 104 - 140 4.1e-10 Protein SET DOMAIN GROUP 2 C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 290
AcsI RAATTY 3 cut(s) 17, 114, 201
AgsI TTSAA 3 cut(s) 38, 206, 262
AjuI GAANNNNNNNTTGG 2 cut(s) 378, 410
Alw21I GWGCWC 1 cut(s) 332
AoxI GGCC 1 cut(s) 41
ApoI RAATTY 3 cut(s) 17, 114, 201
AspS9I GGNCC 1 cut(s) 42
AsuC2I CCSGG 1 cut(s) 307
AsuHPI GGTGA 2 cut(s) 62, 325
Bbv12I GWGCWC 1 cut(s) 332
BccI CCATC 2 cut(s) 53, 158
BcnI CCSGG 1 cut(s) 307
BfmI CTRYAG 1 cut(s) 159
BisI GCNGC 1 cut(s) 291
BlsI GCNGC 1 cut(s) 292
Bme1390I CCNGG 1 cut(s) 307
BmgT120I GGNCC 1 cut(s) 42
BmrFI CCNGG 1 cut(s) 307
BmsI GCATC 3 cut(s) 43, 73, 283
BpmI CTGGAG 1 cut(s) 389
BpuMI CCSGG 1 cut(s) 307
BsaBI GATNNNNATC 1 cut(s) 182
BsaJI CCNNGG 2 cut(s) 45, 306
BsaXI ACNNNNNCTCC 2 cut(s) 302, 332
Bse1I ACTGG 1 cut(s) 372
Bse8I GATNNNNATC 1 cut(s) 182
BseDI CCNNGG 2 cut(s) 45, 306
BseJI GATNNNNATC 1 cut(s) 182
BseNI ACTGG 1 cut(s) 372
BsgI GTGCAG 1 cut(s) 172
BshFI GGCC 1 cut(s) 43
BsiHKAI GWGCWC 1 cut(s) 332
BsiSI CCGG 1 cut(s) 306
BsmI GAATGC 1 cut(s) 358
BsnI GGCC 1 cut(s) 43
Bsp1286I GDGCHC 1 cut(s) 332
Bsp143I GATC 1 cut(s) 219
BspACI CCGC 1 cut(s) 290
BspANI GGCC 1 cut(s) 43
BsrI ACTGG 1 cut(s) 372
BssECI CCNNGG 2 cut(s) 45, 306
BssMI GATC 1 cut(s) 219
BssT1I CCWWGG 1 cut(s) 45
Bst4CI ACNGT 2 cut(s) 193, 212
Bst6I CTCTTC 2 cut(s) 210, 242
BstAPI GCANNNNNTGC 1 cut(s) 195
BstKTI GATC 1 cut(s) 222
BstMBI GATC 1 cut(s) 219
BstMWI GCNNNNNNNGC 1 cut(s) 195
BstSCI CCNGG 1 cut(s) 305
BstSFI CTRYAG 1 cut(s) 159
BsuRI GGCC 1 cut(s) 43
BtsIMutI CAGTG 2 cut(s) 189, 365
Cfr13I GGNCC 1 cut(s) 42
CviAII CATG 1 cut(s) 88
CviJI RGCY 2 cut(s) 43, 399
CviKI_1 RGCY 2 cut(s) 43, 399
DpnI GATC 1 cut(s) 221
DpnII GATC 1 cut(s) 219
Eam1104I CTCTTC 2 cut(s) 210, 242
EarI CTCTTC 2 cut(s) 210, 242
Eco130I CCWWGG 1 cut(s) 45
EcoT14I CCWWGG 1 cut(s) 45
EcoT22I ATGCAT 1 cut(s) 93
ErhI CCWWGG 1 cut(s) 45
FaeI CATG 1 cut(s) 91
FaiI YATR 9 cut(s) 66, 89, 93, 105, 196, 269, 321, 326, 406
FatI CATG 1 cut(s) 87
Fnu4HI GCNGC 1 cut(s) 291
Fsp4HI GCNGC 1 cut(s) 291
GluI GCNGC 1 cut(s) 291
GsuI CTGGAG 1 cut(s) 389
HaeIII GGCC 1 cut(s) 43
HapII CCGG 1 cut(s) 306
Hin1II CATG 1 cut(s) 91
HinfI GANTC 1 cut(s) 183
HpaII CCGG 1 cut(s) 306
HphI GGTGA 2 cut(s) 62, 325
Hpy188I TCNGA 1 cut(s) 279
Hpy188III TCNNGA 3 cut(s) 14, 35, 383
HpyAV CCTTC 1 cut(s) 410
HpyCH4III ACNGT 2 cut(s) 193, 212
HpyCH4V TGCA 4 cut(s) 91, 107, 189, 198
HpyF10VI GCNNNNNNNGC 1 cut(s) 195
Hsp92II CATG 1 cut(s) 91
Kzo9I GATC 1 cut(s) 219
LmnI GCTCC 2 cut(s) 16, 361
LpnPI CCDG 5 cut(s) 27, 188, 319, 353, 396
LweI GCATC 3 cut(s) 43, 73, 283
MaeIII GTNAC 3 cut(s) 119, 151, 170
MalI GATC 1 cut(s) 221
MboI GATC 1 cut(s) 219
MboII GAAGA 4 cut(s) 227, 259, 274, 398
MhlI GDGCHC 1 cut(s) 332
MluCI AATT 5 cut(s) 17, 114, 136, 201, 257
MnlI CCTC 4 cut(s) 304, 366, 372, 403
Mph1103I ATGCAT 1 cut(s) 93
MseI TTAA 2 cut(s) 243, 377
MspI CCGG 1 cut(s) 306
MspR9I CCNGG 1 cut(s) 307
Mva1269I GAATGC 1 cut(s) 358
MwoI GCNNNNNNNGC 1 cut(s) 195
NciI CCSGG 1 cut(s) 307
NdeII GATC 1 cut(s) 219
NlaIII CATG 1 cut(s) 91
NmuCI GTSAC 1 cut(s) 119
NsiI ATGCAT 1 cut(s) 93
PctI GAATGC 1 cut(s) 358
PfeI GAWTC 1 cut(s) 183
PkrI GCNGC 1 cut(s) 292
PspPI GGNCC 1 cut(s) 42
SaqAI TTAA 2 cut(s) 243, 377
SatI GCNGC 1 cut(s) 291
Sau3AI GATC 1 cut(s) 219
Sau96I GGNCC 1 cut(s) 42
ScrFI CCNGG 1 cut(s) 307
SduI GDGCHC 1 cut(s) 332
SetI ASST 6 cut(s) 104, 136, 315, 348, 364, 377
SfaNI GCATC 3 cut(s) 43, 73, 283
SfcI CTRYAG 1 cut(s) 159
Sse9I AATT 5 cut(s) 17, 114, 136, 201, 257
SsiI CCGC 1 cut(s) 290
StyD4I CCNGG 1 cut(s) 305
StyI CCWWGG 1 cut(s) 45
TaaI ACNGT 2 cut(s) 193, 212
TasI AATT 5 cut(s) 17, 114, 136, 201, 257
TauI GCSGC 1 cut(s) 293
TfiI GAWTC 1 cut(s) 183
Tru1I TTAA 2 cut(s) 243, 377
Tru9I TTAA 2 cut(s) 243, 377
TscAI CASTG 2 cut(s) 196, 372
TseFI GTSAC 1 cut(s) 119
Tsp45I GTSAC 1 cut(s) 119
TspDTI ATGAA 1 cut(s) 284
TspRI CASTG 2 cut(s) 196, 372
XapI RAATTY 3 cut(s) 17, 114, 201
Zsp2I ATGCAT 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.