Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00854

Orthogroup ID

OG0010607

Physical Location & Seq

Genomic Coordinates Forward (+)

3088 .. 5017

Gene Structure 1930 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G018960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGTTGCTTATAGAAAGGTGTATCCTTTTTGGAAATGGTATGAGAAGCAAGATGGGATTCGATCTCTGCAGAAAAATAGTAAGGACTGATGGGTATGATTTAGTTGTTGTTGATGCCATGCATAAAGCAACCTATGCAAGTAGAATTTGTCACTTGTGCCGACCTAATTGTGAAGCAAAAGTTACTGCTGTAGATGGTCGTTACAAGATTGGAATATACACCGTACGTAAAATTCAATACGGTGAAGAGATCACATTGGACTACAACTCTATTAAGGAGGGTAAGGAAGAATATGAAGCATCAGATTGTTTGTGCGGCAGTCAAGTTTGCCGGGGAGGTTACCTGAATTTGATAGGCGAAGGATCATTCCTGGAGATGCTGAAGGATTGTCATAAAATTCTGAATTGTCATCGTCTAATGCTGGAAGCTTGCGAGTTAAATTCAGTATCTGAGGTGGATTCACTTGACCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009791 GO:0009908 GO:0009987 GO:0010228 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019538 GO:0022414 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0036211 GO:0042054 GO:0042800 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048443 GO:0048466 GO:0048467 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0051276 GO:0051568 GO:0061458 GO:0071704 GO:0071840 GO:0090567 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SET

Protein Analysis

157

Amino Acids

17.75

Weight (kDa)

5.82

Isoelectric Point (pI)

36.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SET	PF00856	36 - 89	8.2e-11	SET domain
SDG2_C	PF19633	100 - 157	1.1e-20	Protein SET DOMAIN GROUP 2 C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0010607)

Species	Orthologous Gene IDs
pyrus_communis	pycom09g02670 pycom17g08790
rosa_chinensis	RchiOBHm_Chr2g0131031 RchiOBHm_Chr2g0131041
rosa_laevigata	RLG00000019162 RLG00000019163
rosa_multiflora	Rmu_co8448607.1_g000001 Rmu_sc0003629.1_g000060 Rmu_sc0036661.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113280
rosa_rugosa	Rorug02G0294500.1 Rorug05G0580100
rosa_samantha	Rh2AG346900 Rh2BG354200 Rh2BG354300 Rh2CG332800 Rh2DG372300 Rh6BG135200
rosa_wichuraiana	Rw0G018960 Rw2G028120 Rw2G028160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	315
AclWI	GGATC	1 cut(s)	370
AcsI	RAATTY	5 cut(s)	144, 231, 346, 396, 439
AcuI	CTGAAG	1 cut(s)	401
AfaI	GTAC	1 cut(s)	225
AgsI	TTSAA	1 cut(s)	236
AjnI	CCWGG	1 cut(s)	369
AluBI	AGCT	1 cut(s)	428
AluI	AGCT	1 cut(s)	428
AlwI	GGATC	1 cut(s)	370
AlwNI	CAGNNNCTG	1 cut(s)	449
ApoI	RAATTY	5 cut(s)	144, 231, 346, 396, 439
AsuC2I	CCSGG	1 cut(s)	332
AsuHPI	GGTGA	1 cut(s)	254
BccI	CCATC	3 cut(s)	46, 83, 188
BciT130I	CCWGG	1 cut(s)	371
BciVI	GTATCC	1 cut(s)	32
BcnI	CCSGG	1 cut(s)	332
BfmI	CTRYAG	2 cut(s)	67, 189
BfuI	GTATCC	1 cut(s)	32
BisI	GCNGC	1 cut(s)	316
BlsI	GCNGC	1 cut(s)	317
Bme1390I	CCNGG	2 cut(s)	332, 371
BmrFI	CCNGG	2 cut(s)	332, 371
BmsI	GCATC	3 cut(s)	103, 308, 366
BpmI	CTGGAG	1 cut(s)	392
BpuMI	CCSGG	1 cut(s)	332
BsaAI	YACGTR	1 cut(s)	227
BsaJI	CCNNGG	1 cut(s)	331
BseBI	CCWGG	1 cut(s)	371
BseDI	CCNNGG	1 cut(s)	331
BseMII	CTCAG	1 cut(s)	441
BsiSI	CCGG	1 cut(s)	331
BsiWI	CGTACG	1 cut(s)	223
Bsp143I	GATC	3 cut(s)	61, 249, 362
BspACI	CCGC	1 cut(s)	315
BspCNI	CTCAG	1 cut(s)	442
BspMAI	CTGCAG	1 cut(s)	71
BspPI	GGATC	1 cut(s)	370
BssECI	CCNNGG	1 cut(s)	331
BssMI	GATC	3 cut(s)	61, 249, 362
Bst2UI	CCWGG	1 cut(s)	371
Bst4CI	ACNGT	2 cut(s)	223, 242
Bst6I	CTCTTC	1 cut(s)	240
BstAPI	GCANNNNNTGC	1 cut(s)	134
BstBAI	YACGTR	1 cut(s)	227
BstC8I	GCNNGC	1 cut(s)	430
BstDEI	CTNAG	1 cut(s)	450
BstEII	GGTNACC	1 cut(s)	338
BstKTI	GATC	3 cut(s)	64, 252, 365
BstMBI	GATC	3 cut(s)	61, 249, 362
BstMWI	GCNNNNNNNGC	1 cut(s)	134
BstNI	CCWGG	1 cut(s)	371
BstPI	GGTNACC	1 cut(s)	338
BstSCI	CCNGG	2 cut(s)	330, 369
BstSFI	CTRYAG	2 cut(s)	67, 189
BstSNI	TACGTA	1 cut(s)	227
BsuI	GTATCC	1 cut(s)	32
Cac8I	GCNNGC	1 cut(s)	430
CaiI	CAGNNNCTG	1 cut(s)	449
Csp6I	GTAC	1 cut(s)	224
CviAII	CATG	1 cut(s)	118
CviJI	RGCY	1 cut(s)	428
CviKI_1	RGCY	1 cut(s)	428
CviQI	GTAC	1 cut(s)	224
DdeI	CTNAG	1 cut(s)	450
DpnI	GATC	3 cut(s)	63, 251, 364
DpnII	GATC	3 cut(s)	61, 249, 362
Eam1104I	CTCTTC	1 cut(s)	240
EarI	CTCTTC	1 cut(s)	240
Eco105I	TACGTA	1 cut(s)	227
Eco57I	CTGAAG	1 cut(s)	401
Eco91I	GGTNACC	1 cut(s)	338
EcoO65I	GGTNACC	1 cut(s)	338
EcoRII	CCWGG	1 cut(s)	369
EcoT22I	ATGCAT	1 cut(s)	123
FaeI	CATG	1 cut(s)	121
FaiI	YATR	9 cut(s)	11, 41, 96, 119, 123, 135, 217, 294, 393
FatI	CATG	1 cut(s)	117
Fnu4HI	GCNGC	1 cut(s)	316
Fsp4HI	GCNGC	1 cut(s)	316
GluI	GCNGC	1 cut(s)	316
GsuI	CTGGAG	1 cut(s)	392
HapII	CCGG	1 cut(s)	331
Hin1II	CATG	1 cut(s)	121
HindIII	AAGCTT	1 cut(s)	426
HinfI	GANTC	2 cut(s)	57, 458
HpaII	CCGG	1 cut(s)	331
HphI	GGTGA	1 cut(s)	254
Hpy188I	TCNGA	3 cut(s)	304, 402, 451
HpyAV	CCTTC	2 cut(s)	353, 376
HpyCH4III	ACNGT	2 cut(s)	223, 242
HpyCH4IV	ACGT	1 cut(s)	226
HpyCH4V	TGCA	3 cut(s)	69, 121, 137
HpyF10VI	GCNNNNNNNGC	1 cut(s)	134
HpyF3I	CTNAG	1 cut(s)	450
HpySE526I	ACGT	1 cut(s)	226
Hsp92II	CATG	1 cut(s)	121
Kzo9I	GATC	3 cut(s)	61, 249, 362
LpnPI	CCDG	5 cut(s)	344, 356, 356, 383, 407
LweI	GCATC	3 cut(s)	103, 308, 366
MaeII	ACGT	1 cut(s)	226
MaeIII	GTNAC	4 cut(s)	149, 181, 200, 338
MalI	GATC	3 cut(s)	63, 251, 364
MboI	GATC	3 cut(s)	61, 249, 362
MboII	GAAGA	2 cut(s)	257, 299
MluCI	AATT	7 cut(s)	144, 166, 231, 346, 396, 403, 439
MnlI	CCTC	3 cut(s)	271, 329, 445
Mph1103I	ATGCAT	1 cut(s)	123
MseI	TTAA	2 cut(s)	273, 437
MspI	CCGG	1 cut(s)	331
MspR9I	CCNGG	2 cut(s)	332, 371
MvaI	CCWGG	1 cut(s)	371
MwoI	GCNNNNNNNGC	1 cut(s)	134
NciI	CCSGG	1 cut(s)	332
NdeII	GATC	3 cut(s)	61, 249, 362
NlaIII	CATG	1 cut(s)	121
NmuCI	GTSAC	1 cut(s)	149
NsiI	ATGCAT	1 cut(s)	123
PfeI	GAWTC	2 cut(s)	57, 458
Pfl23II	CGTACG	1 cut(s)	223
PfoI	TCCNGGA	1 cut(s)	369
PkrI	GCNGC	1 cut(s)	317
Ppu21I	YACGTR	1 cut(s)	227
Psp6I	CCWGG	1 cut(s)	369
PspEI	GGTNACC	1 cut(s)	338
PspGI	CCWGG	1 cut(s)	369
PspLI	CGTACG	1 cut(s)	223
PstI	CTGCAG	1 cut(s)	71
PstNI	CAGNNNCTG	1 cut(s)	449
RsaI	GTAC	1 cut(s)	225
RsaNI	GTAC	1 cut(s)	224
SaqAI	TTAA	2 cut(s)	273, 437
SatI	GCNGC	1 cut(s)	316
Sau3AI	GATC	3 cut(s)	61, 249, 362
ScrFI	CCNGG	2 cut(s)	332, 371
SetI	ASST	9 cut(s)	20, 134, 166, 229, 340, 345, 430, 456, 471
SfaNI	GCATC	3 cut(s)	103, 308, 366
SfcI	CTRYAG	2 cut(s)	67, 189
SnaBI	TACGTA	1 cut(s)	227
Sse9I	AATT	7 cut(s)	144, 166, 231, 346, 396, 403, 439
SsiI	CCGC	1 cut(s)	315
StyD4I	CCNGG	2 cut(s)	330, 369
TaaI	ACNGT	2 cut(s)	223, 242
TaiI	ACGT	1 cut(s)	229
TaqI	TCGA	1 cut(s)	60
TasI	AATT	7 cut(s)	144, 166, 231, 346, 396, 403, 439
TauI	GCSGC	1 cut(s)	318
TfiI	GAWTC	2 cut(s)	57, 458
Tru1I	TTAA	2 cut(s)	273, 437
Tru9I	TTAA	2 cut(s)	273, 437
TseFI	GTSAC	1 cut(s)	149
Tsp45I	GTSAC	1 cut(s)	149
TspDTI	ATGAA	1 cut(s)	309
XapI	RAATTY	5 cut(s)	144, 231, 346, 396, 439
Zsp2I	ATGCAT	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.