Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0010607

Physical Location & Seq

Genomic Coordinates Reverse (-)

53007269 .. 53008802

Gene Structure 1534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG372300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGCTGAAGGATTGTCATAAAATTCTGAATTGTCATCGTCTAATGCTGGAAGCTTGCGAGTTAAATTCAGTATCTGAGGTGGATTCACTTGACCTATTGAGTGATTGCATATTCAGCTTGTTTGGGGAGGTAAAGCACAACTTAAAAGAAAAGAACAATTATTGCTCAGATACATGTCGTGAGGTTGAGAGGAGTGATGCAGAGGCTGACGGTGTGTTCAAACAAAGGGTTCAGAGTTTGGCTGTTACTCTTGACAAGATGAAGTATGTTATGTGCTCTGTATTTGGCAACCCAAAGAATGCTCCACCTACACTGGAGAGGTTAAGTCCAGAAGAAGCTGTTGGCTTTCTATGGGAGGGAGAAGGATCATTTATTGAGGAAGTCCTTCAGAGGATTGCTCCTAATGTGGAGGAAGAATTGCTAAATGATCTCAAGTCCAAAATGCCTACTCATGATCCGTCGGGTTCAGATGACATTTGGAAAGAACTTGAGAGTTTGTTACAATGGTTGAGAGATGAGGTCAGGAATCTTCCAAGTACATGCACGTCTAAGCTTAACGCTGCTGCTGACTTTATGCATGCAGAAGGAACTACATTAGAATACGGGAATACAAACCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009791 GO:0009908 GO:0009987 GO:0010228 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019538 GO:0022414 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0036211 GO:0042054 GO:0042800 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048443 GO:0048466 GO:0048467 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0051276 GO:0051568 GO:0061458 GO:0071704 GO:0071840 GO:0090567 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SET

Protein Analysis

206

Amino Acids

23.27

Weight (kDa)

4.68

Isoelectric Point (pI)

48.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SDG2_C	PF19633	2 - 32	5.5e-07	Protein SET DOMAIN GROUP 2 C-terminal
SDG2_C	PF19633	44 - 195	2.9e-56	Protein SET DOMAIN GROUP 2 C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010607)

Species	Orthologous Gene IDs
pyrus_communis	pycom09g02670 pycom17g08790
rosa_chinensis	RchiOBHm_Chr2g0131031 RchiOBHm_Chr2g0131041
rosa_laevigata	RLG00000019162 RLG00000019163
rosa_multiflora	Rmu_co8448607.1_g000001 Rmu_sc0003629.1_g000060 Rmu_sc0036661.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113280
rosa_rugosa	Rorug02G0294500.1 Rorug05G0580100
rosa_samantha	Rh2AG346900 Rh2BG354200 Rh2BG354300 Rh2CG332800 Rh2DG372300 Rh6BG135200
rosa_wichuraiana	Rw0G018960 Rw2G028120 Rw2G028160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	373, 449
AcsI	RAATTY	2 cut(s)	21, 64
AcuI	CTGAAG	2 cut(s)	26, 371
AfaI	GTAC	1 cut(s)	538
AflIII	ACRYGT	1 cut(s)	173
AgsI	TTSAA	1 cut(s)	220
AjiI	CACGTC	1 cut(s)	546
AjuI	GAANNNNNNNTTGG	2 cut(s)	324, 356
AluBI	AGCT	4 cut(s)	53, 117, 338, 553
AluI	AGCT	4 cut(s)	53, 117, 338, 553
Alw21I	GWGCWC	1 cut(s)	278
AlwI	GGATC	2 cut(s)	373, 449
AlwNI	CAGNNNCTG	2 cut(s)	74, 206
ApeKI	GCWGC	2 cut(s)	560, 563
ApoI	RAATTY	2 cut(s)	21, 64
Asp700I	GAANNNNTTC	1 cut(s)	384
Bbv12I	GWGCWC	1 cut(s)	278
BbvI	GCAGC	2 cut(s)	547, 550
BisI	GCNGC	2 cut(s)	561, 564
BlsI	GCNGC	2 cut(s)	562, 565
BmgBI	CACGTC	1 cut(s)	546
BmsI	GCATC	1 cut(s)	187
BplI	GAGNNNNNCTC	2 cut(s)	382, 414
BpmI	CTGGAG	1 cut(s)	335
BpuEI	CTTGAG	2 cut(s)	416, 509
Bse1I	ACTGG	1 cut(s)	318
BseMII	CTCAG	2 cut(s)	66, 180
BseNI	ACTGG	1 cut(s)	318
BseRI	GAGGAG	1 cut(s)	205
BseXI	GCAGC	2 cut(s)	547, 550
BsiHKAI	GWGCWC	1 cut(s)	278
BsmI	GAATGC	1 cut(s)	304
Bsp1286I	GDGCHC	1 cut(s)	278
Bsp143I	GATC	3 cut(s)	365, 427, 454
BspCNI	CTCAG	2 cut(s)	67, 179
BspHI	TCATGA	1 cut(s)	451
BspPI	GGATC	2 cut(s)	373, 449
BsrI	ACTGG	1 cut(s)	318
BssMI	GATC	3 cut(s)	365, 427, 454
Bst4CI	ACNGT	1 cut(s)	212
BstC8I	GCNNGC	2 cut(s)	55, 579
BstDEI	CTNAG	3 cut(s)	75, 166, 549
BstKTI	GATC	3 cut(s)	368, 430, 457
BstMBI	GATC	3 cut(s)	365, 427, 454
BstMWI	GCNNNNNNNGC	1 cut(s)	114
BstNSI	RCATGY	3 cut(s)	177, 543, 581
BstV1I	GCAGC	2 cut(s)	547, 550
BtrI	CACGTC	1 cut(s)	546
BtsIMutI	CAGTG	1 cut(s)	311
Cac8I	GCNNGC	2 cut(s)	55, 579
CaiI	CAGNNNCTG	2 cut(s)	74, 206
CciI	TCATGA	1 cut(s)	451
Csp6I	GTAC	1 cut(s)	537
CviAII	CATG	4 cut(s)	174, 452, 540, 578
CviJI	RGCY	7 cut(s)	53, 117, 206, 242, 338, 345, 553
CviKI_1	RGCY	7 cut(s)	53, 117, 206, 242, 338, 345, 553
CviQI	GTAC	1 cut(s)	537
DdeI	CTNAG	3 cut(s)	75, 166, 549
DpnI	GATC	3 cut(s)	367, 429, 456
DpnII	GATC	3 cut(s)	365, 427, 454
Eco57I	CTGAAG	2 cut(s)	26, 371
EcoT22I	ATGCAT	1 cut(s)	579
FaeI	CATG	4 cut(s)	177, 455, 543, 581
FalI	AAGNNNNNCTT	2 cut(s)	125, 157
FatI	CATG	4 cut(s)	173, 451, 539, 577
Fnu4HI	GCNGC	2 cut(s)	561, 564
Fsp4HI	GCNGC	2 cut(s)	561, 564
GluI	GCNGC	2 cut(s)	561, 564
GsuI	CTGGAG	1 cut(s)	335
Hin1II	CATG	4 cut(s)	177, 455, 543, 581
HindIII	AAGCTT	2 cut(s)	51, 551
HinfI	GANTC	2 cut(s)	83, 526
Hpy188I	TCNGA	6 cut(s)	27, 76, 169, 234, 390, 469
Hpy188III	TCNNGA	5 cut(s)	179, 251, 329, 452, 523
Hpy99I	CGWCG	1 cut(s)	463
HpyAV	CCTTC	3 cut(s)	356, 395, 578
HpyCH4III	ACNGT	1 cut(s)	212
HpyCH4IV	ACGT	1 cut(s)	545
HpyCH4V	TGCA	5 cut(s)	108, 200, 543, 577, 581
HpyF10VI	GCNNNNNNNGC	1 cut(s)	114
HpyF3I	CTNAG	3 cut(s)	75, 166, 549
HpySE526I	ACGT	1 cut(s)	545
Hsp92II	CATG	4 cut(s)	177, 455, 543, 581
Kzo9I	GATC	3 cut(s)	365, 427, 454
LmnI	GCTCC	2 cut(s)	307, 403
LpnPI	CCDG	4 cut(s)	32, 299, 342, 508
Lsp1109I	GCAGC	2 cut(s)	547, 550
LweI	GCATC	1 cut(s)	187
MaeII	ACGT	1 cut(s)	545
MaeIII	GTNAC	2 cut(s)	244, 498
MalI	GATC	3 cut(s)	367, 429, 456
MboI	GATC	3 cut(s)	365, 427, 454
MboII	GAAGA	3 cut(s)	344, 425, 521
MhlI	GDGCHC	1 cut(s)	278
MluCI	AATT	5 cut(s)	21, 28, 64, 157, 416
Mph1103I	ATGCAT	1 cut(s)	579
MroXI	GAANNNNTTC	1 cut(s)	384
MseI	TTAA	4 cut(s)	62, 143, 323, 555
Mva1269I	GAATGC	1 cut(s)	304
MwoI	GCNNNNNNNGC	1 cut(s)	114
NdeII	GATC	3 cut(s)	365, 427, 454
NlaIII	CATG	4 cut(s)	177, 455, 543, 581
NsiI	ATGCAT	1 cut(s)	579
NspI	RCATGY	3 cut(s)	177, 543, 581
PaeI	GCATGC	1 cut(s)	581
PagI	TCATGA	1 cut(s)	451
PciI	ACATGT	1 cut(s)	173
PctI	GAATGC	1 cut(s)	304
PdmI	GAANNNNTTC	1 cut(s)	384
PfeI	GAWTC	2 cut(s)	83, 526
PkrI	GCNGC	2 cut(s)	562, 565
PscI	ACATGT	1 cut(s)	173
PstNI	CAGNNNCTG	2 cut(s)	74, 206
RsaI	GTAC	1 cut(s)	538
RsaNI	GTAC	1 cut(s)	537
SaqAI	TTAA	4 cut(s)	62, 143, 323, 555
SatI	GCNGC	2 cut(s)	561, 564
Sau3AI	GATC	3 cut(s)	365, 427, 454
SduI	GDGCHC	1 cut(s)	278
SfaNI	GCATC	1 cut(s)	187
SmlI	CTYRAG	2 cut(s)	431, 488
SmoI	CTYRAG	2 cut(s)	431, 488
SphI	GCATGC	1 cut(s)	581
Sse9I	AATT	5 cut(s)	21, 28, 64, 157, 416
TaaI	ACNGT	1 cut(s)	212
TaiI	ACGT	1 cut(s)	548
TasI	AATT	5 cut(s)	21, 28, 64, 157, 416
TatI	WGTACW	1 cut(s)	536
TfiI	GAWTC	2 cut(s)	83, 526
Tru1I	TTAA	4 cut(s)	62, 143, 323, 555
Tru9I	TTAA	4 cut(s)	62, 143, 323, 555
TscAI	CASTG	1 cut(s)	318
TseI	GCWGC	2 cut(s)	560, 563
TspDTI	ATGAA	1 cut(s)	275
TspGWI	ACGGA	1 cut(s)	447
TspRI	CASTG	1 cut(s)	318
XapI	RAATTY	2 cut(s)	21, 64
XceI	RCATGY	3 cut(s)	177, 543, 581
XmnI	GAANNNNTTC	1 cut(s)	384
Zsp2I	ATGCAT	1 cut(s)	579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.