Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0010607

Physical Location & Seq

Genomic Coordinates Reverse (-)

44940117 .. 44940660

Gene Structure 544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G028160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGAAGTATGTTATGTGCTCTGTATTTGGCAACCCAAAGAATGCTCCACCTACACTGGAGAGGTTAAGTCCAGAAGAAGCTGTTGGCTTTCTATGGGAGGGAGAAGGATCATTTGTTGAGGAAGTCCTTCAGAGGATTGCTCCTAATGTGGAGGAAGAATTGCTAAATGATCTCAAGTCCAAAATGCCTACTCATGATCCGTCGGGTTCAGATGACATTTGGAAAGAACTTGAGAGTTTGTTACAATGGTTGAGAGATGAGGTCAGGAATCTTCCAAGTACATGCACGTCTAAGCTTAACGCTGCTGCTGACTTTATGCATGCAGAAGGAACTACATTAGAATACGGGAATACAAACCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009791 GO:0009908 GO:0009987 GO:0010228 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019538 GO:0022414 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0036211 GO:0042054 GO:0042800 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048443 GO:0048466 GO:0048467 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0051276 GO:0051568 GO:0061458 GO:0071704 GO:0071840 GO:0090567 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SET

Protein Analysis

120

Amino Acids

13.48

Weight (kDa)

4.47

Isoelectric Point (pI)

52.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SDG2_C	PF19633	2 - 109	1.1e-38	Protein SET DOMAIN GROUP 2 C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0010607)

Species	Orthologous Gene IDs
pyrus_communis	pycom09g02670 pycom17g08790
rosa_chinensis	RchiOBHm_Chr2g0131031 RchiOBHm_Chr2g0131041
rosa_laevigata	RLG00000019162 RLG00000019163
rosa_multiflora	Rmu_co8448607.1_g000001 Rmu_sc0003629.1_g000060 Rmu_sc0036661.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113280
rosa_rugosa	Rorug02G0294500.1 Rorug05G0580100
rosa_samantha	Rh2AG346900 Rh2BG354200 Rh2BG354300 Rh2CG332800 Rh2DG372300 Rh6BG135200
rosa_wichuraiana	Rw0G018960 Rw2G028120 Rw2G028160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	115, 191
AcuI	CTGAAG	1 cut(s)	113
AfaI	GTAC	1 cut(s)	280
AjiI	CACGTC	1 cut(s)	288
AjuI	GAANNNNNNNTTGG	2 cut(s)	66, 98
AluBI	AGCT	2 cut(s)	80, 295
AluI	AGCT	2 cut(s)	80, 295
Alw21I	GWGCWC	1 cut(s)	20
AlwI	GGATC	2 cut(s)	115, 191
ApeKI	GCWGC	2 cut(s)	302, 305
Asp700I	GAANNNNTTC	1 cut(s)	126
Bbv12I	GWGCWC	1 cut(s)	20
BbvI	GCAGC	2 cut(s)	289, 292
BisI	GCNGC	2 cut(s)	303, 306
BlsI	GCNGC	2 cut(s)	304, 307
BmgBI	CACGTC	1 cut(s)	288
BplI	GAGNNNNNCTC	2 cut(s)	124, 156
BpmI	CTGGAG	1 cut(s)	77
BpuEI	CTTGAG	2 cut(s)	158, 251
Bse1I	ACTGG	1 cut(s)	60
BseNI	ACTGG	1 cut(s)	60
BseXI	GCAGC	2 cut(s)	289, 292
BsiHKAI	GWGCWC	1 cut(s)	20
BsmI	GAATGC	1 cut(s)	46
Bsp1286I	GDGCHC	1 cut(s)	20
Bsp143I	GATC	3 cut(s)	107, 169, 196
BspHI	TCATGA	1 cut(s)	193
BspPI	GGATC	2 cut(s)	115, 191
BsrI	ACTGG	1 cut(s)	60
BssMI	GATC	3 cut(s)	107, 169, 196
BstC8I	GCNNGC	1 cut(s)	321
BstDEI	CTNAG	1 cut(s)	291
BstKTI	GATC	3 cut(s)	110, 172, 199
BstMBI	GATC	3 cut(s)	107, 169, 196
BstNSI	RCATGY	2 cut(s)	285, 323
BstV1I	GCAGC	2 cut(s)	289, 292
BtrI	CACGTC	1 cut(s)	288
BtsIMutI	CAGTG	1 cut(s)	53
Cac8I	GCNNGC	1 cut(s)	321
CciI	TCATGA	1 cut(s)	193
Csp6I	GTAC	1 cut(s)	279
CviAII	CATG	3 cut(s)	194, 282, 320
CviJI	RGCY	3 cut(s)	80, 87, 295
CviKI_1	RGCY	3 cut(s)	80, 87, 295
CviQI	GTAC	1 cut(s)	279
DdeI	CTNAG	1 cut(s)	291
DpnI	GATC	3 cut(s)	109, 171, 198
DpnII	GATC	3 cut(s)	107, 169, 196
Eco57I	CTGAAG	1 cut(s)	113
EcoT22I	ATGCAT	1 cut(s)	321
FaeI	CATG	3 cut(s)	197, 285, 323
FaiI	YATR	7 cut(s)	9, 14, 94, 195, 283, 317, 321
FatI	CATG	3 cut(s)	193, 281, 319
Fnu4HI	GCNGC	2 cut(s)	303, 306
Fsp4HI	GCNGC	2 cut(s)	303, 306
GluI	GCNGC	2 cut(s)	303, 306
GsuI	CTGGAG	1 cut(s)	77
Hin1II	CATG	3 cut(s)	197, 285, 323
HindIII	AAGCTT	1 cut(s)	293
HinfI	GANTC	1 cut(s)	268
Hpy188I	TCNGA	2 cut(s)	132, 211
Hpy188III	TCNNGA	3 cut(s)	71, 194, 265
Hpy99I	CGWCG	1 cut(s)	205
HpyAV	CCTTC	3 cut(s)	98, 137, 320
HpyCH4IV	ACGT	1 cut(s)	287
HpyCH4V	TGCA	3 cut(s)	285, 319, 323
HpyF3I	CTNAG	1 cut(s)	291
HpySE526I	ACGT	1 cut(s)	287
Hsp92II	CATG	3 cut(s)	197, 285, 323
Kzo9I	GATC	3 cut(s)	107, 169, 196
LmnI	GCTCC	2 cut(s)	49, 145
LpnPI	CCDG	3 cut(s)	41, 84, 250
Lsp1109I	GCAGC	2 cut(s)	289, 292
MaeII	ACGT	1 cut(s)	287
MaeIII	GTNAC	1 cut(s)	240
MalI	GATC	3 cut(s)	109, 171, 198
MboI	GATC	3 cut(s)	107, 169, 196
MboII	GAAGA	3 cut(s)	86, 167, 263
MhlI	GDGCHC	1 cut(s)	20
MluCI	AATT	1 cut(s)	158
MnlI	CCTC	6 cut(s)	54, 91, 112, 126, 145, 253
Mph1103I	ATGCAT	1 cut(s)	321
MroXI	GAANNNNTTC	1 cut(s)	126
MseI	TTAA	2 cut(s)	65, 297
Mva1269I	GAATGC	1 cut(s)	46
NdeII	GATC	3 cut(s)	107, 169, 196
NlaIII	CATG	3 cut(s)	197, 285, 323
NsiI	ATGCAT	1 cut(s)	321
NspI	RCATGY	2 cut(s)	285, 323
PaeI	GCATGC	1 cut(s)	323
PagI	TCATGA	1 cut(s)	193
PctI	GAATGC	1 cut(s)	46
PdmI	GAANNNNTTC	1 cut(s)	126
PfeI	GAWTC	1 cut(s)	268
PkrI	GCNGC	2 cut(s)	304, 307
RsaI	GTAC	1 cut(s)	280
RsaNI	GTAC	1 cut(s)	279
SaqAI	TTAA	2 cut(s)	65, 297
SatI	GCNGC	2 cut(s)	303, 306
Sau3AI	GATC	3 cut(s)	107, 169, 196
SduI	GDGCHC	1 cut(s)	20
SetI	ASST	6 cut(s)	52, 65, 82, 264, 290, 297
SmlI	CTYRAG	2 cut(s)	173, 230
SmoI	CTYRAG	2 cut(s)	173, 230
SphI	GCATGC	1 cut(s)	323
Sse9I	AATT	1 cut(s)	158
TaiI	ACGT	1 cut(s)	290
TasI	AATT	1 cut(s)	158
TatI	WGTACW	1 cut(s)	278
TfiI	GAWTC	1 cut(s)	268
Tru1I	TTAA	2 cut(s)	65, 297
Tru9I	TTAA	2 cut(s)	65, 297
TscAI	CASTG	1 cut(s)	60
TseI	GCWGC	2 cut(s)	302, 305
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	189
TspRI	CASTG	1 cut(s)	60
XceI	RCATGY	2 cut(s)	285, 323
XmnI	GAANNNNTTC	1 cut(s)	126
Zsp2I	ATGCAT	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.