Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0010607

Physical Location & Seq

Genomic Coordinates Reverse (-)

48680217 .. 48681110

Gene Structure 894 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG354200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGAATTCACCGCCGGTATACATTAGTCCGCTTGACTTGGGGCCCAAGTACACTGACAAATCGGGGGCAGGTTTTCAGGAGTATTGCAAGACTTTTGGGGAGAATTATTGTTTATGGTGGCTAATTTTTTGCTATAATCAGCCTAATGCAGAGCCAGGTTGTAGTATTGCTAGAGCAAGTAGGGATTGCTTATCATTACCTGATAACGATTCCTCCTATGCCGAGATTTCGGAACCTTCACGGCCGCTTGTGTATGGTCCAAAGGCTGTCAAATGTATGCTTTCGAGGGTGGATGTGTCAAATACCAAGGATGGAAAGGCACAAATAAAGGAAGAAATTGGAGAAGGGACAGAAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009791 GO:0009908 GO:0009987 GO:0010228 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019538 GO:0022414 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0036211 GO:0042054 GO:0042800 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048443 GO:0048466 GO:0048467 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0051276 GO:0051568 GO:0061458 GO:0071704 GO:0071840 GO:0090567 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SET

Protein Analysis

119

Amino Acids

13.15

Weight (kDa)

4.78

Isoelectric Point (pI)

50.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SDG2_C	PF19633	2 - 104	2e-35	Protein SET DOMAIN GROUP 2 C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0010607)

Species	Orthologous Gene IDs
pyrus_communis	pycom09g02670 pycom17g08790
rosa_chinensis	RchiOBHm_Chr2g0131031 RchiOBHm_Chr2g0131041
rosa_laevigata	RLG00000019162 RLG00000019163
rosa_multiflora	Rmu_co8448607.1_g000001 Rmu_sc0003629.1_g000060 Rmu_sc0036661.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113280
rosa_rugosa	Rorug02G0294500.1 Rorug05G0580100
rosa_samantha	Rh2AG346900 Rh2BG354200 Rh2BG354300 Rh2CG332800 Rh2DG372300 Rh6BG135200
rosa_wichuraiana	Rw0G018960 Rw2G028120 Rw2G028160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	59
AccI	GTMKAC	1 cut(s)	18
AciI	CCGC	3 cut(s)	11, 29, 245
AcoI	YGGCCR	1 cut(s)	242
AcsI	RAATTY	1 cut(s)	4
AfaI	GTAC	1 cut(s)	50
AjnI	CCWGG	1 cut(s)	154
AoxI	GGCC	2 cut(s)	41, 242
ApaI	GGGCCC	1 cut(s)	45
ApoI	RAATTY	1 cut(s)	4
AspS9I	GGNCC	3 cut(s)	41, 42, 257
AvaII	GGWCC	1 cut(s)	257
BaeGI	GKGCMC	1 cut(s)	45
BanII	GRGCYC	1 cut(s)	45
BccI	CCATC	1 cut(s)	305
BceAI	ACGGC	1 cut(s)	257
BciT130I	CCWGG	1 cut(s)	156
BfaI	CTAG	1 cut(s)	171
BfuAI	ACCTGC	1 cut(s)	59
BisI	GCNGC	1 cut(s)	245
BlsI	GCNGC	1 cut(s)	246
Bme1390I	CCNGG	1 cut(s)	156
Bme18I	GGWCC	1 cut(s)	257
BmgT120I	GGNCC	3 cut(s)	41, 42, 257
BmiI	GGNNCC	3 cut(s)	42, 43, 234
BmrFI	CCNGG	1 cut(s)	156
BsaJI	CCNNGG	1 cut(s)	306
BsaXI	ACNNNNNCTCC	2 cut(s)	197, 227
Bse118I	RCCGGY	1 cut(s)	13
BseBI	CCWGG	1 cut(s)	156
BseDI	CCNNGG	1 cut(s)	306
BseGI	GGATG	2 cut(s)	298, 316
BseSI	GKGCMC	1 cut(s)	45
BseX3I	CGGCCG	1 cut(s)	242
Bsh1285I	CGRYCG	1 cut(s)	245
BshFI	GGCC	2 cut(s)	43, 244
BsiEI	CGRYCG	1 cut(s)	245
BsiSI	CCGG	1 cut(s)	14
BsnI	GGCC	2 cut(s)	43, 244
Bsp120I	GGGCCC	1 cut(s)	41
Bsp1286I	GDGCHC	1 cut(s)	45
BspACI	CCGC	3 cut(s)	11, 29, 245
BspANI	GGCC	2 cut(s)	43, 244
BspLI	GGNNCC	3 cut(s)	42, 43, 234
BspMI	ACCTGC	1 cut(s)	59
BsrFI	RCCGGY	1 cut(s)	13
BssAI	RCCGGY	1 cut(s)	13
BssECI	CCNNGG	1 cut(s)	306
BssNAI	GTATAC	1 cut(s)	19
BssT1I	CCWWGG	1 cut(s)	306
Bst1107I	GTATAC	1 cut(s)	19
Bst2UI	CCWGG	1 cut(s)	156
BstF5I	GGATG	2 cut(s)	298, 316
BstMCI	CGRYCG	1 cut(s)	245
BstNI	CCWGG	1 cut(s)	156
BstSCI	CCNGG	1 cut(s)	154
BstSLI	GKGCMC	1 cut(s)	45
BstZ17I	GTATAC	1 cut(s)	19
BstZI	CGGCCG	1 cut(s)	242
BsuRI	GGCC	2 cut(s)	43, 244
BtsCI	GGATG	2 cut(s)	298, 316
BtsIMutI	CAGTG	1 cut(s)	51
BveI	ACCTGC	1 cut(s)	59
Cfr10I	RCCGGY	1 cut(s)	13
Cfr13I	GGNCC	3 cut(s)	41, 42, 257
Csp6I	GTAC	1 cut(s)	49
CviJI	RGCY	6 cut(s)	43, 121, 142, 154, 244, 266
CviKI_1	RGCY	6 cut(s)	43, 121, 142, 154, 244, 266
CviQI	GTAC	1 cut(s)	49
EaeI	YGGCCR	1 cut(s)	242
EagI	CGGCCG	1 cut(s)	242
EclXI	CGGCCG	1 cut(s)	242
Eco130I	CCWWGG	1 cut(s)	306
Eco24I	GRGCYC	1 cut(s)	45
Eco47I	GGWCC	1 cut(s)	257
Eco52I	CGGCCG	1 cut(s)	242
EcoO109I	RGGNCCY	1 cut(s)	41
EcoRI	GAATTC	1 cut(s)	4
EcoRII	CCWGG	1 cut(s)	154
EcoT14I	CCWWGG	1 cut(s)	306
EcoT38I	GRGCYC	1 cut(s)	45
ErhI	CCWWGG	1 cut(s)	306
FaiI	YATR	6 cut(s)	19, 115, 135, 219, 255, 278
FblI	GTMKAC	1 cut(s)	18
Fnu4HI	GCNGC	1 cut(s)	245
FokI	GGATG	2 cut(s)	305, 323
FriOI	GRGCYC	1 cut(s)	45
Fsp4HI	GCNGC	1 cut(s)	245
FspBI	CTAG	1 cut(s)	171
GluI	GCNGC	1 cut(s)	245
HaeIII	GGCC	2 cut(s)	43, 244
HapII	CCGG	1 cut(s)	14
HinfI	GANTC	1 cut(s)	209
HpaII	CCGG	1 cut(s)	14
Hpy166II	GTNNAC	2 cut(s)	19, 51
Hpy188I	TCNGA	1 cut(s)	232
Hpy188III	TCNNGA	1 cut(s)	77
Hpy8I	GTNNAC	2 cut(s)	19, 51
HpyAV	CCTTC	2 cut(s)	246, 338
HpyCH4V	TGCA	2 cut(s)	87, 149
LpnPI	CCDG	6 cut(s)	27, 54, 62, 141, 168, 213
MaeI	CTAG	1 cut(s)	171
MboII	GAAGA	1 cut(s)	344
MhlI	GDGCHC	1 cut(s)	45
MluCI	AATT	4 cut(s)	4, 103, 123, 336
MnlI	CCTC	2 cut(s)	223, 279
MspI	CCGG	1 cut(s)	14
MspR9I	CCNGG	1 cut(s)	156
MvaI	CCWGG	1 cut(s)	156
NlaIV	GGNNCC	3 cut(s)	42, 43, 234
NmeAIII	GCCGAG	1 cut(s)	247
PfeI	GAWTC	1 cut(s)	209
PkrI	GCNGC	1 cut(s)	246
Psp6I	CCWGG	1 cut(s)	154
PspGI	CCWGG	1 cut(s)	154
PspN4I	GGNNCC	3 cut(s)	42, 43, 234
PspOMI	GGGCCC	1 cut(s)	41
PspPI	GGNCC	3 cut(s)	41, 42, 257
RsaI	GTAC	1 cut(s)	50
RsaNI	GTAC	1 cut(s)	49
SatI	GCNGC	1 cut(s)	245
Sau96I	GGNCC	3 cut(s)	41, 42, 257
ScrFI	CCNGG	1 cut(s)	156
SduI	GDGCHC	1 cut(s)	45
SetI	ASST	4 cut(s)	73, 160, 202, 238
SinI	GGWCC	1 cut(s)	257
Sse9I	AATT	4 cut(s)	4, 103, 123, 336
SsiI	CCGC	3 cut(s)	11, 29, 245
SspMI	CTAG	1 cut(s)	171
StyD4I	CCNGG	1 cut(s)	154
StyI	CCWWGG	1 cut(s)	306
TaqI	TCGA	1 cut(s)	284
TasI	AATT	4 cut(s)	4, 103, 123, 336
TatI	WGTACW	1 cut(s)	48
TauI	GCSGC	1 cut(s)	247
TfiI	GAWTC	1 cut(s)	209
TscAI	CASTG	1 cut(s)	58
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	58
VpaK11BI	GGWCC	1 cut(s)	257
XapI	RAATTY	1 cut(s)	4
XmiI	GTMKAC	1 cut(s)	18
XspI	CTAG	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.