Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8448607.1

Orthogroup ID

OG0010607

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1675

Gene Structure 1675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8448607.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

gctgagggtgtgttcaaccaaaggcttcagaatttggctgttactcttgacaaggtgaggtatgttatgagctccgtatttggcaaccctaagaatgctccacctccactggagaggttaagtccagaagaagctgttggctttgtatggaagggagaaggatcagttgttgaggaactccttcagagcatggctcctcatgtggaggaacaattgctaaatgatctcaagtccaagatgcttgctcatgatccatcgagttcagatgacatttggaaagaacttaaaagatcgttactatggttgagagatgaggtccggaatcttccatgtacatacaagtctcggcatgacgctgctgctgacttgatccatatttatgcatacacaaggtgctacattagaatacgggaatacaaatcagtaacttcaccgccggtttacattagtccacttgacttgggccccaactacactaacaaatcgggggcagattttcaggagtattgcaagacttacggggagaattattgtttagggcagctatttttttggtataatcagtctaatgcagagccagattgtagtatggctagagcaagtaggggttgcttatcattacctgatatcggttccttctatgccaagatttcgaaacctacacggcagcgtgtttatggtccaaaggctgtcaaatttatgctttcaaggatg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009791 GO:0009908 GO:0009987 GO:0010228 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019538 GO:0022414 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0036211 GO:0042054 GO:0042800 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048443 GO:0048466 GO:0048467 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0051276 GO:0051568 GO:0061458 GO:0071704 GO:0071840 GO:0090567 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SET

Protein Analysis

238

Amino Acids

27.15

Weight (kDa)

8.45

Isoelectric Point (pI)

51.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010607)

Species	Orthologous Gene IDs
pyrus_communis	pycom09g02670 pycom17g08790
rosa_chinensis	RchiOBHm_Chr2g0131031 RchiOBHm_Chr2g0131041
rosa_laevigata	RLG00000019162 RLG00000019163
rosa_multiflora	Rmu_co8448607.1_g000001 Rmu_sc0003629.1_g000060 Rmu_sc0036661.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113280
rosa_rugosa	Rorug02G0294500.1 Rorug05G0580100
rosa_samantha	Rh2AG346900 Rh2BG354200 Rh2BG354300 Rh2CG332800 Rh2DG372300 Rh6BG135200
rosa_wichuraiana	Rw0G018960 Rw2G028120 Rw2G028160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	318
AciI	CCGC	1 cut(s)	434
AclWI	GGATC	3 cut(s)	169, 245, 364
AcsI	RAATTY	2 cut(s)	31, 695
AcuI	CTGAAG	2 cut(s)	11, 167
AdeI	CACNNNGTG	1 cut(s)	393
AfaI	GTAC	1 cut(s)	334
AfiI	CCNNNNNNNGG	1 cut(s)	629
AgsI	TTSAA	2 cut(s)	16, 708
AjuI	GAANNNNNNNTTGG	2 cut(s)	120, 152
AluBI	AGCT	3 cut(s)	72, 134, 544
AluI	AGCT	3 cut(s)	72, 134, 544
Alw21I	GWGCWC	1 cut(s)	74
Alw26I	GTCTC	1 cut(s)	348
AlwI	GGATC	3 cut(s)	169, 245, 364
Aor13HI	TCCGGA	1 cut(s)	318
AoxI	GGCC	1 cut(s)	463
ApaI	GGGCCC	1 cut(s)	467
ApeKI	GCWGC	4 cut(s)	356, 359, 541, 667
ApoI	RAATTY	2 cut(s)	31, 695
Asp700I	GAANNNNTTC	1 cut(s)	180
AspS9I	GGNCC	4 cut(s)	316, 463, 464, 680
AsuHPI	GGTGA	2 cut(s)	67, 423
AsuII	TTCGAA	1 cut(s)	653
AvaII	GGWCC	2 cut(s)	316, 680
BaeGI	GKGCMC	1 cut(s)	467
BanII	GRGCYC	2 cut(s)	74, 467
Bbv12I	GWGCWC	1 cut(s)	74
BbvCI	CCTCAGC	1 cut(s)	3
BbvI	GCAGC	4 cut(s)	343, 346, 553, 679
BccI	CCATC	1 cut(s)	262
BceAI	ACGGC	1 cut(s)	680
BcoDI	GTCTC	1 cut(s)	348
BfaI	CTAG	1 cut(s)	594
BisI	GCNGC	4 cut(s)	357, 360, 542, 668
BlsI	GCNGC	4 cut(s)	358, 361, 543, 669
Bme18I	GGWCC	2 cut(s)	316, 680
BmgT120I	GGNCC	4 cut(s)	316, 463, 464, 680
BmiI	GGNNCC	4 cut(s)	195, 465, 466, 634
BmsI	GCATC	1 cut(s)	228
BplI	GAGNNNNNCTC	2 cut(s)	178, 210
BpmI	CTGGAG	1 cut(s)	131
Bpu10I	CCTNAGC	1 cut(s)	3
Bpu14I	TTCGAA	1 cut(s)	653
BpuEI	CTTGAG	1 cut(s)	212
BsaWI	WCCGGW	1 cut(s)	318
Bsc4I	CCNNNNNNNGG	1 cut(s)	629
Bse118I	RCCGGY	1 cut(s)	436
Bse1I	ACTGG	1 cut(s)	114
BseAI	TCCGGA	1 cut(s)	318
BseLI	CCNNNNNNNGG	1 cut(s)	629
BseNI	ACTGG	1 cut(s)	114
BseRI	GAGGAG	1 cut(s)	186
BseSI	GKGCMC	1 cut(s)	467
BseXI	GCAGC	4 cut(s)	343, 346, 553, 679
BshFI	GGCC	1 cut(s)	465
BsiHKAI	GWGCWC	1 cut(s)	74
BsiSI	CCGG	2 cut(s)	319, 437
BslI	CCNNNNNNNGG	1 cut(s)	629
BsmAI	GTCTC	1 cut(s)	348
BsmI	GAATGC	1 cut(s)	100
BsnI	GGCC	1 cut(s)	465
Bsp119I	TTCGAA	1 cut(s)	653
Bsp120I	GGGCCC	1 cut(s)	463
Bsp1286I	GDGCHC	2 cut(s)	74, 467
Bsp13I	TCCGGA	1 cut(s)	318
Bsp1407I	TGTACA	1 cut(s)	332
Bsp143I	GATC	5 cut(s)	161, 223, 250, 290, 369
BspACI	CCGC	1 cut(s)	434
BspANI	GGCC	1 cut(s)	465
BspEI	TCCGGA	1 cut(s)	318
BspHI	TCATGA	1 cut(s)	247
BspLI	GGNNCC	4 cut(s)	195, 465, 466, 634
BspPI	GGATC	3 cut(s)	169, 245, 364
BspT104I	TTCGAA	1 cut(s)	653
BsrFI	RCCGGY	1 cut(s)	436
BsrGI	TGTACA	1 cut(s)	332
BsrI	ACTGG	1 cut(s)	114
BssAI	RCCGGY	1 cut(s)	436
BssMI	GATC	5 cut(s)	161, 223, 250, 290, 369
BstAUI	TGTACA	1 cut(s)	332
BstBI	TTCGAA	1 cut(s)	653
BstC8I	GCNNGC	1 cut(s)	243
BstDEI	CTNAG	2 cut(s)	3, 90
BstKTI	GATC	5 cut(s)	164, 226, 253, 293, 372
BstMAI	GTCTC	1 cut(s)	348
BstMBI	GATC	5 cut(s)	161, 223, 250, 290, 369
BstSLI	GKGCMC	1 cut(s)	467
BstV1I	GCAGC	4 cut(s)	343, 346, 553, 679
BsuRI	GGCC	1 cut(s)	465
BtsIMutI	CAGTG	1 cut(s)	107
Cac8I	GCNNGC	1 cut(s)	243
CciI	TCATGA	1 cut(s)	247
Cfr10I	RCCGGY	1 cut(s)	436
Cfr13I	GGNCC	4 cut(s)	316, 463, 464, 680
CseI	GACGC	1 cut(s)	362
Csp6I	GTAC	1 cut(s)	333
CspCI	CAANNNNNGTGG	2 cut(s)	441, 476
CviAII	CATG	5 cut(s)	190, 200, 248, 330, 350
CviQI	GTAC	1 cut(s)	333
DdeI	CTNAG	2 cut(s)	3, 90
DpnI	GATC	5 cut(s)	163, 225, 252, 292, 371
DpnII	GATC	5 cut(s)	161, 223, 250, 290, 369
DraIII	CACNNNGTG	1 cut(s)	393
Ecl136II	GAGCTC	1 cut(s)	72
Eco24I	GRGCYC	2 cut(s)	74, 467
Eco32I	GATATC	1 cut(s)	628
Eco47I	GGWCC	2 cut(s)	316, 680
Eco53kI	GAGCTC	1 cut(s)	72
Eco57I	CTGAAG	2 cut(s)	11, 167
EcoICRI	GAGCTC	1 cut(s)	72
EcoO109I	RGGNCCY	1 cut(s)	464
EcoRV	GATATC	1 cut(s)	628
EcoT22I	ATGCAT	1 cut(s)	385
EcoT38I	GRGCYC	2 cut(s)	74, 467
FaeI	CATG	5 cut(s)	193, 203, 251, 333, 353
FatI	CATG	5 cut(s)	189, 199, 247, 329, 349
Fnu4HI	GCNGC	4 cut(s)	357, 360, 542, 668
FriOI	GRGCYC	2 cut(s)	74, 467
Fsp4HI	GCNGC	4 cut(s)	357, 360, 542, 668
FspBI	CTAG	1 cut(s)	594
GluI	GCNGC	4 cut(s)	357, 360, 542, 668
GsuI	CTGGAG	1 cut(s)	131
HaeIII	GGCC	1 cut(s)	465
HapII	CCGG	2 cut(s)	319, 437
HgaI	GACGC	1 cut(s)	362
Hin1II	CATG	5 cut(s)	193, 203, 251, 333, 353
HinfI	GANTC	1 cut(s)	322
HpaII	CCGG	2 cut(s)	319, 437
HphI	GGTGA	2 cut(s)	67, 423
Hpy166II	GTNNAC	2 cut(s)	442, 452
Hpy188I	TCNGA	3 cut(s)	30, 186, 265
Hpy188III	TCNNGA	5 cut(s)	47, 125, 248, 319, 500
Hpy8I	GTNNAC	2 cut(s)	442, 452
HpyAV	CCTTC	4 cut(s)	145, 152, 191, 646
HpyCH4V	TGCA	3 cut(s)	383, 510, 572
HpyF3I	CTNAG	2 cut(s)	3, 90
Hsp92II	CATG	5 cut(s)	193, 203, 251, 333, 353
Kpn2I	TCCGGA	1 cut(s)	318
Kzo9I	GATC	5 cut(s)	161, 223, 250, 290, 369
LmnI	GCTCC	3 cut(s)	77, 103, 199
LpnPI	CCDG	7 cut(s)	95, 138, 332, 450, 485, 591, 636
Lsp1109I	GCAGC	4 cut(s)	343, 346, 553, 679
LweI	GCATC	1 cut(s)	228
MaeI	CTAG	1 cut(s)	594
MaeIII	GTNAC	3 cut(s)	40, 294, 424
MalI	GATC	5 cut(s)	163, 225, 252, 292, 371
MboI	GATC	5 cut(s)	161, 223, 250, 290, 369
MboII	GAAGA	2 cut(s)	140, 317
MfeI	CAATTG	1 cut(s)	212
MhlI	GDGCHC	2 cut(s)	74, 467
MluCI	AATT	4 cut(s)	31, 212, 526, 695
MnlI	CCTC	7 cut(s)	51, 108, 114, 166, 199, 207, 307
Mph1103I	ATGCAT	1 cut(s)	385
MroI	TCCGGA	1 cut(s)	318
MroXI	GAANNNNTTC	1 cut(s)	180
MseI	TTAA	2 cut(s)	119, 285
MslI	CAYNNNNRTG	1 cut(s)	378
MspI	CCGG	2 cut(s)	319, 437
MunI	CAATTG	1 cut(s)	212
Mva1269I	GAATGC	1 cut(s)	100
NdeII	GATC	5 cut(s)	161, 223, 250, 290, 369
NlaIII	CATG	5 cut(s)	193, 203, 251, 333, 353
NlaIV	GGNNCC	4 cut(s)	195, 465, 466, 634
NmeAIII	GCCGAG	1 cut(s)	325
NsiI	ATGCAT	1 cut(s)	385
NspV	TTCGAA	1 cut(s)	653
PagI	TCATGA	1 cut(s)	247
PctI	GAATGC	1 cut(s)	100
PdmI	GAANNNNTTC	1 cut(s)	180
PfeI	GAWTC	1 cut(s)	322
PkrI	GCNGC	4 cut(s)	358, 361, 543, 669
Psp124BI	GAGCTC	1 cut(s)	74
PspN4I	GGNNCC	4 cut(s)	195, 465, 466, 634
PspOMI	GGGCCC	1 cut(s)	463
PspPI	GGNCC	4 cut(s)	316, 463, 464, 680
RsaI	GTAC	1 cut(s)	334
RsaNI	GTAC	1 cut(s)	333
RseI	CAYNNNNRTG	1 cut(s)	378
SacI	GAGCTC	1 cut(s)	74
SaqAI	TTAA	2 cut(s)	119, 285
SatI	GCNGC	4 cut(s)	357, 360, 542, 668
Sau3AI	GATC	5 cut(s)	161, 223, 250, 290, 369
Sau96I	GGNCC	4 cut(s)	316, 463, 464, 680
SduI	GDGCHC	2 cut(s)	74, 467
SfaNI	GCATC	1 cut(s)	228
SfuI	TTCGAA	1 cut(s)	653
SinI	GGWCC	2 cut(s)	316, 680
SmiMI	CAYNNNNRTG	1 cut(s)	378
SmlI	CTYRAG	1 cut(s)	227
SmoI	CTYRAG	1 cut(s)	227
Sse9I	AATT	4 cut(s)	31, 212, 526, 695
SsiI	CCGC	1 cut(s)	434
SspMI	CTAG	1 cut(s)	594
SstI	GAGCTC	1 cut(s)	74
TaqI	TCGA	2 cut(s)	257, 653
TasI	AATT	4 cut(s)	31, 212, 526, 695
TatI	WGTACW	1 cut(s)	332
TfiI	GAWTC	1 cut(s)	322
Tru1I	TTAA	2 cut(s)	119, 285
Tru9I	TTAA	2 cut(s)	119, 285
TscAI	CASTG	1 cut(s)	114
TseI	GCWGC	4 cut(s)	356, 359, 541, 667
TspGWI	ACGGA	1 cut(s)	64
TspRI	CASTG	1 cut(s)	114
VpaK11BI	GGWCC	2 cut(s)	316, 680
XapI	RAATTY	2 cut(s)	31, 695
XmnI	GAANNNNTTC	1 cut(s)	180
XspI	CTAG	1 cut(s)	594
Zsp2I	ATGCAT	1 cut(s)	385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.