Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0036661.1

Orthogroup ID

OG0010607

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 983

Gene Structure 982 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0036661.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 271 bp

atgtcacccttcactgggagacacttcactgggaccgggactgctcccatcttctatcctttgcggcctgttgtcgaagacattcagaaaactgctaacgaggatagtgatcttcaaattgtgtatcctttttggaaatggtatgagaagcaagatgggattcgatctctgcagaaaaatagtaaagatccagctccagaattttacaacttttatcttgaaaggcccaagggtgatgctgatgggtatgatttagttgttgttgatgcca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009791 GO:0009908 GO:0009987 GO:0010228 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019538 GO:0022414 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0036211 GO:0042054 GO:0042800 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048443 GO:0048466 GO:0048467 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0051276 GO:0051568 GO:0061458 GO:0071704 GO:0071840 GO:0090567 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SET

Protein Analysis

90

Amino Acids

10.39

Weight (kDa)

4.78

Isoelectric Point (pI)

66.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010607)

Species	Orthologous Gene IDs
pyrus_communis	pycom09g02670 pycom17g08790
rosa_chinensis	RchiOBHm_Chr2g0131031 RchiOBHm_Chr2g0131041
rosa_laevigata	RLG00000019162 RLG00000019163
rosa_multiflora	Rmu_co8448607.1_g000001 Rmu_sc0003629.1_g000060 Rmu_sc0036661.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113280
rosa_rugosa	Rorug02G0294500.1 Rorug05G0580100
rosa_samantha	Rh2AG346900 Rh2BG354200 Rh2BG354300 Rh2CG332800 Rh2DG372300 Rh6BG135200
rosa_wichuraiana	Rw0G018960 Rw2G028120 Rw2G028160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	64
AclWI	GGATC	1 cut(s)	182
AcsI	RAATTY	1 cut(s)	200
AfiI	CCNNNNNNNGG	2 cut(s)	14, 15
AgsI	TTSAA	2 cut(s)	116, 221
AluBI	AGCT	1 cut(s)	194
AluI	AGCT	1 cut(s)	194
Alw26I	GTCTC	1 cut(s)	13
AlwI	GGATC	1 cut(s)	182
AoxI	GGCC	2 cut(s)	65, 224
ApoI	RAATTY	1 cut(s)	200
Asp700I	GAANNNNTTC	1 cut(s)	81
AspS9I	GGNCC	2 cut(s)	33, 225
AsuC2I	CCSGG	1 cut(s)	37
AsuHPI	GGTGA	1 cut(s)	245
AvaII	GGWCC	1 cut(s)	33
BbsI	GAAGAC	1 cut(s)	84
BccI	CCATC	3 cut(s)	56, 149, 236
BciVI	GTATCC	1 cut(s)	135
BcnI	CCSGG	1 cut(s)	37
BcoDI	GTCTC	1 cut(s)	13
BfmI	CTRYAG	1 cut(s)	170
BfuI	GTATCC	1 cut(s)	135
BisI	GCNGC	1 cut(s)	65
BlsI	GCNGC	1 cut(s)	66
Bme1390I	CCNGG	1 cut(s)	37
Bme18I	GGWCC	1 cut(s)	33
BmgT120I	GGNCC	2 cut(s)	33, 225
BmiI	GGNNCC	1 cut(s)	34
BmrFI	CCNGG	1 cut(s)	37
BmrI	ACTGGG	2 cut(s)	24, 39
BmsI	GCATC	2 cut(s)	226, 256
BmuI	ACTGGG	2 cut(s)	24, 39
BpiI	GAAGAC	1 cut(s)	84
BpmI	CTGGAG	1 cut(s)	180
BpuMI	CCSGG	1 cut(s)	37
BsaBI	GATNNNNATC	1 cut(s)	108
BsaJI	CCNNGG	1 cut(s)	228
Bsc4I	CCNNNNNNNGG	2 cut(s)	14, 15
Bse1I	ACTGG	2 cut(s)	19, 34
Bse8I	GATNNNNATC	1 cut(s)	108
BseDI	CCNNGG	1 cut(s)	228
BseJI	GATNNNNATC	1 cut(s)	108
BseLI	CCNNNNNNNGG	2 cut(s)	14, 15
BseNI	ACTGG	2 cut(s)	19, 34
BshFI	GGCC	2 cut(s)	67, 226
BsiSI	CCGG	1 cut(s)	36
BslFI	GGGAC	2 cut(s)	46, 52
BslI	CCNNNNNNNGG	2 cut(s)	14, 15
BsmAI	GTCTC	1 cut(s)	13
BsmFI	GGGAC	2 cut(s)	46, 52
BsnI	GGCC	2 cut(s)	67, 226
Bsp143I	GATC	3 cut(s)	109, 164, 187
BspACI	CCGC	1 cut(s)	64
BspANI	GGCC	2 cut(s)	67, 226
BspLI	GGNNCC	1 cut(s)	34
BspMAI	CTGCAG	1 cut(s)	174
BspPI	GGATC	1 cut(s)	182
BsrI	ACTGG	2 cut(s)	19, 34
BssECI	CCNNGG	1 cut(s)	228
BssMI	GATC	3 cut(s)	109, 164, 187
BssT1I	CCWWGG	1 cut(s)	228
BstKTI	GATC	3 cut(s)	112, 167, 190
BstMAI	GTCTC	1 cut(s)	13
BstMBI	GATC	3 cut(s)	109, 164, 187
BstSCI	CCNGG	1 cut(s)	35
BstSFI	CTRYAG	1 cut(s)	170
BstV2I	GAAGAC	1 cut(s)	84
BstX2I	RGATCY	1 cut(s)	187
BstYI	RGATCY	1 cut(s)	187
BsuI	GTATCC	1 cut(s)	135
BsuRI	GGCC	2 cut(s)	67, 226
BtsIMutI	CAGTG	2 cut(s)	12, 27
Cfr13I	GGNCC	2 cut(s)	33, 225
CviJI	RGCY	3 cut(s)	67, 194, 226
CviKI_1	RGCY	3 cut(s)	67, 194, 226
DpnI	GATC	3 cut(s)	111, 166, 189
DpnII	GATC	3 cut(s)	109, 164, 187
Eco130I	CCWWGG	1 cut(s)	228
Eco47I	GGWCC	1 cut(s)	33
EcoT14I	CCWWGG	1 cut(s)	228
ErhI	CCWWGG	1 cut(s)	228
FaiI	YATR	2 cut(s)	144, 249
FaqI	GGGAC	2 cut(s)	46, 52
Fnu4HI	GCNGC	1 cut(s)	65
Fsp4HI	GCNGC	1 cut(s)	65
GluI	GCNGC	1 cut(s)	65
GsuI	CTGGAG	1 cut(s)	180
HaeIII	GGCC	2 cut(s)	67, 226
HapII	CCGG	1 cut(s)	36
HinfI	GANTC	1 cut(s)	160
HpaII	CCGG	1 cut(s)	36
HphI	GGTGA	1 cut(s)	245
Hpy188I	TCNGA	1 cut(s)	87
Hpy188III	TCNNGA	2 cut(s)	197, 218
HpyAV	CCTTC	1 cut(s)	19
HpyCH4V	TGCA	1 cut(s)	172
Kzo9I	GATC	3 cut(s)	109, 164, 187
LmnI	GCTCC	2 cut(s)	49, 199
LpnPI	CCDG	5 cut(s)	15, 49, 81, 204, 210
LweI	GCATC	2 cut(s)	226, 256
MaeIII	GTNAC	1 cut(s)	3
MalI	GATC	3 cut(s)	111, 166, 189
MboI	GATC	3 cut(s)	109, 164, 187
MboII	GAAGA	3 cut(s)	43, 89, 104
MflI	RGATCY	1 cut(s)	187
MluCI	AATT	2 cut(s)	117, 200
MnlI	CCTC	1 cut(s)	94
MroXI	GAANNNNTTC	1 cut(s)	81
MspI	CCGG	1 cut(s)	36
MspR9I	CCNGG	1 cut(s)	37
NciI	CCSGG	1 cut(s)	37
NdeII	GATC	3 cut(s)	109, 164, 187
NlaIV	GGNNCC	1 cut(s)	34
NmuCI	GTSAC	1 cut(s)	3
PdmI	GAANNNNTTC	1 cut(s)	81
PfeI	GAWTC	1 cut(s)	160
PkrI	GCNGC	1 cut(s)	66
PspN4I	GGNNCC	1 cut(s)	34
PspPI	GGNCC	2 cut(s)	33, 225
PstI	CTGCAG	1 cut(s)	174
PsuI	RGATCY	1 cut(s)	187
SatI	GCNGC	1 cut(s)	65
Sau3AI	GATC	3 cut(s)	109, 164, 187
Sau96I	GGNCC	2 cut(s)	33, 225
ScrFI	CCNGG	1 cut(s)	37
SetI	ASST	1 cut(s)	196
SfaNI	GCATC	2 cut(s)	226, 256
SfcI	CTRYAG	1 cut(s)	170
SinI	GGWCC	1 cut(s)	33
Sse9I	AATT	2 cut(s)	117, 200
SsiI	CCGC	1 cut(s)	64
StyD4I	CCNGG	1 cut(s)	35
StyI	CCWWGG	1 cut(s)	228
TaqI	TCGA	2 cut(s)	75, 163
TasI	AATT	2 cut(s)	117, 200
TauI	GCSGC	1 cut(s)	67
TfiI	GAWTC	1 cut(s)	160
TscAI	CASTG	2 cut(s)	19, 34
TseFI	GTSAC	1 cut(s)	3
Tsp45I	GTSAC	1 cut(s)	3
TspRI	CASTG	2 cut(s)	19, 34
VpaK11BI	GGWCC	1 cut(s)	33
XapI	RAATTY	1 cut(s)	200
XmnI	GAANNNNTTC	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.