Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0010607

Physical Location & Seq

Genomic Coordinates Reverse (-)

21281109 .. 21282159

Gene Structure 1051 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG135200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGAGAAAAGCCTCATTGAAATATCCCTCCCCGACGGATATTATGTTGGCCATGACAAGGAAGAAGAGTCCATCTTTAGTCTGCAACAGAAAATGTCAGGGTGATGCTGATGGGTATGATTTAGTTGTTGTTGATGCCATGCATAAAGCAACCTATGCAAGTAGAATTTGTCACTCGTGCCGACCTAATTGTGAAGCAAAAGTTACTGCTGTAGATGATCGTTACCAGATTGGAATCTACACTGTACGTAAGATTAAATACAGTGAAGAGATCACATTGGACTACAACTCTATTAAGGAGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009791 GO:0009908 GO:0009987 GO:0010228 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019538 GO:0022414 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0036211 GO:0042054 GO:0042800 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048443 GO:0048466 GO:0048467 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0051276 GO:0051568 GO:0061458 GO:0071704 GO:0071840 GO:0090567 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SET

Protein Analysis

101

Amino Acids

11.47

Weight (kDa)

8.99

Isoelectric Point (pI)

38.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SET	PF00856	42 - 96	5.3e-12	SET domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010607)

Species	Orthologous Gene IDs
pyrus_communis	pycom09g02670 pycom17g08790
rosa_chinensis	RchiOBHm_Chr2g0131031 RchiOBHm_Chr2g0131041
rosa_laevigata	RLG00000019162 RLG00000019163
rosa_multiflora	Rmu_co8448607.1_g000001 Rmu_sc0003629.1_g000060 Rmu_sc0036661.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113280
rosa_rugosa	Rorug02G0294500.1 Rorug05G0580100
rosa_samantha	Rh2AG346900 Rh2BG354200 Rh2BG354300 Rh2CG332800 Rh2DG372300 Rh6BG135200
rosa_wichuraiana	Rw0G018960 Rw2G028120 Rw2G028160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	48
AcsI	RAATTY	1 cut(s)	165
AfaI	GTAC	1 cut(s)	246
AfiI	CCNNNNNNNGG	1 cut(s)	57
AgsI	TTSAA	1 cut(s)	19
AoxI	GGCC	1 cut(s)	48
ApoI	RAATTY	1 cut(s)	165
AsuHPI	GGTGA	1 cut(s)	113
BalI	TGGCCA	1 cut(s)	50
BauI	CACGAG	1 cut(s)	175
BccI	CCATC	2 cut(s)	79, 104
BfmI	CTRYAG	1 cut(s)	210
BmsI	GCATC	2 cut(s)	94, 124
BsaAI	YACGTR	1 cut(s)	248
BsaBI	GATNNNNATC	1 cut(s)	233
Bsc4I	CCNNNNNNNGG	1 cut(s)	57
Bse8I	GATNNNNATC	1 cut(s)	233
BseJI	GATNNNNATC	1 cut(s)	233
BseLI	CCNNNNNNNGG	1 cut(s)	57
BshFI	GGCC	1 cut(s)	50
BslI	CCNNNNNNNGG	1 cut(s)	57
BsnI	GGCC	1 cut(s)	50
Bsp143I	GATC	2 cut(s)	217, 270
BspANI	GGCC	1 cut(s)	50
BssMI	GATC	2 cut(s)	217, 270
BssSI	CACGAG	1 cut(s)	175
Bst2BI	CACGAG	1 cut(s)	175
Bst4CI	ACNGT	2 cut(s)	244, 263
Bst6I	CTCTTC	2 cut(s)	59, 261
BstAPI	GCANNNNNTGC	1 cut(s)	155
BstBAI	YACGTR	1 cut(s)	248
BstKTI	GATC	2 cut(s)	220, 273
BstMBI	GATC	2 cut(s)	217, 270
BstMWI	GCNNNNNNNGC	1 cut(s)	155
BstSFI	CTRYAG	1 cut(s)	210
BstSNI	TACGTA	1 cut(s)	248
BsuRI	GGCC	1 cut(s)	50
BtsIMutI	CAGTG	2 cut(s)	240, 268
Csp6I	GTAC	1 cut(s)	245
CviAII	CATG	2 cut(s)	52, 139
CviJI	RGCY	2 cut(s)	11, 50
CviKI_1	RGCY	2 cut(s)	11, 50
CviQI	GTAC	1 cut(s)	245
DpnI	GATC	2 cut(s)	219, 272
DpnII	GATC	2 cut(s)	217, 270
EaeI	YGGCCR	1 cut(s)	48
Eam1104I	CTCTTC	2 cut(s)	59, 261
EarI	CTCTTC	2 cut(s)	59, 261
Eco105I	TACGTA	1 cut(s)	248
EcoT22I	ATGCAT	1 cut(s)	144
FaeI	CATG	2 cut(s)	55, 142
FaiI	YATR	6 cut(s)	44, 53, 117, 140, 144, 156
FatI	CATG	2 cut(s)	51, 138
HaeIII	GGCC	1 cut(s)	50
Hin1II	CATG	2 cut(s)	55, 142
HinfI	GANTC	2 cut(s)	67, 234
HphI	GGTGA	1 cut(s)	113
Hpy188I	TCNGA	1 cut(s)	305
Hpy99I	CGWCG	1 cut(s)	37
HpyCH4III	ACNGT	2 cut(s)	244, 263
HpyCH4IV	ACGT	1 cut(s)	247
HpyCH4V	TGCA	3 cut(s)	84, 142, 158
HpyF10VI	GCNNNNNNNGC	1 cut(s)	155
HpySE526I	ACGT	1 cut(s)	247
Hsp92II	CATG	2 cut(s)	55, 142
Kzo9I	GATC	2 cut(s)	217, 270
LpnPI	CCDG	2 cut(s)	83, 239
LweI	GCATC	2 cut(s)	94, 124
MaeII	ACGT	1 cut(s)	247
MaeIII	GTNAC	3 cut(s)	170, 202, 221
MalI	GATC	2 cut(s)	219, 272
MboI	GATC	2 cut(s)	217, 270
MboII	GAAGA	3 cut(s)	73, 76, 278
MlsI	TGGCCA	1 cut(s)	50
MluCI	AATT	2 cut(s)	165, 187
MluNI	TGGCCA	1 cut(s)	50
MlyI	GAGTC	1 cut(s)	76
MnlI	CCTC	3 cut(s)	22, 37, 292
Mox20I	TGGCCA	1 cut(s)	50
Mph1103I	ATGCAT	1 cut(s)	144
MscI	TGGCCA	1 cut(s)	50
MseI	TTAA	2 cut(s)	255, 294
Msp20I	TGGCCA	1 cut(s)	50
MwoI	GCNNNNNNNGC	1 cut(s)	155
NdeII	GATC	2 cut(s)	217, 270
NlaIII	CATG	2 cut(s)	55, 142
NmuCI	GTSAC	1 cut(s)	170
NsiI	ATGCAT	1 cut(s)	144
PfeI	GAWTC	1 cut(s)	234
PleI	GAGTC	1 cut(s)	75
PpsI	GAGTC	1 cut(s)	75
Ppu21I	YACGTR	1 cut(s)	248
RsaI	GTAC	1 cut(s)	246
RsaNI	GTAC	1 cut(s)	245
SaqAI	TTAA	2 cut(s)	255, 294
Sau3AI	GATC	2 cut(s)	217, 270
SchI	GAGTC	1 cut(s)	76
SetI	ASST	4 cut(s)	155, 187, 250, 303
SfaNI	GCATC	2 cut(s)	94, 124
SfcI	CTRYAG	1 cut(s)	210
SgeI	CNNG	9 cut(s)	43, 64, 69, 110, 151, 171, 187, 189, 238
SnaBI	TACGTA	1 cut(s)	248
Sse9I	AATT	2 cut(s)	165, 187
TaaI	ACNGT	2 cut(s)	244, 263
TaiI	ACGT	1 cut(s)	250
TasI	AATT	2 cut(s)	165, 187
TfiI	GAWTC	1 cut(s)	234
Tru1I	TTAA	2 cut(s)	255, 294
Tru9I	TTAA	2 cut(s)	255, 294
TscAI	CASTG	2 cut(s)	247, 268
TseFI	GTSAC	1 cut(s)	170
Tsp45I	GTSAC	1 cut(s)	170
TspGWI	ACGGA	1 cut(s)	50
TspRI	CASTG	2 cut(s)	247, 268
XapI	RAATTY	1 cut(s)	165
Zsp2I	ATGCAT	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.