Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010607

Physical Location & Seq

Genomic Coordinates Reverse (-)

47136297 .. 47138707

Gene Structure 2411 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ50242

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGCATAAAGCAACCTATGCAAGTAGAATTTGTCACTTGTGCCGACCTAATTGTGAAGCAAAAGTTACTGCTGTAGATGGTCGTTACAAGATTGGAATATACACCGTACGTAAAATTCAATACGGTGAAGAGATCACATTGGACTACAACTCTATTAAGGAGGGTAAGGAAGAATATGAAGCATCAGATTGTTTGTGCGGCAGTCAAGTTTGCCGGGGAGGTTACCTGAATTTGATAGGCGAAGGATCATTCCTGGAGATGCTGAAGGATTGTCATAAAATTCTGAATTGTCATCGTCTAATGCTGGAAGCTTGCGAGTTAAATTCAGTATCTGAGGTGGATTCACTTGACCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009791 GO:0009908 GO:0009987 GO:0010228 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019538 GO:0022414 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0036211 GO:0042054 GO:0042800 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048443 GO:0048466 GO:0048467 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0051276 GO:0051568 GO:0061458 GO:0071704 GO:0071840 GO:0090567 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SET

Protein Analysis

118

Amino Acids

13.32

Weight (kDa)

5.54

Isoelectric Point (pI)

36.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SET	PF00856	3 - 50	6.3e-10	SET domain
SDG2_C	PF19633	61 - 118	5.8e-21	Protein SET DOMAIN GROUP 2 C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0010607)

Species	Orthologous Gene IDs
pyrus_communis	pycom09g02670 pycom17g08790
rosa_chinensis	RchiOBHm_Chr2g0131031 RchiOBHm_Chr2g0131041
rosa_laevigata	RLG00000019162 RLG00000019163
rosa_multiflora	Rmu_co8448607.1_g000001 Rmu_sc0003629.1_g000060 Rmu_sc0036661.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113280
rosa_rugosa	Rorug02G0294500.1 Rorug05G0580100
rosa_samantha	Rh2AG346900 Rh2BG354200 Rh2BG354300 Rh2CG332800 Rh2DG372300 Rh6BG135200
rosa_wichuraiana	Rw0G018960 Rw2G028120 Rw2G028160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	198
AclWI	GGATC	1 cut(s)	253
AcsI	RAATTY	5 cut(s)	27, 114, 229, 279, 322
AcuI	CTGAAG	1 cut(s)	284
AfaI	GTAC	1 cut(s)	108
AgsI	TTSAA	1 cut(s)	119
AjnI	CCWGG	1 cut(s)	252
AluBI	AGCT	1 cut(s)	311
AluI	AGCT	1 cut(s)	311
AlwI	GGATC	1 cut(s)	253
AlwNI	CAGNNNCTG	1 cut(s)	332
ApoI	RAATTY	5 cut(s)	27, 114, 229, 279, 322
AsuC2I	CCSGG	1 cut(s)	215
AsuHPI	GGTGA	1 cut(s)	137
BccI	CCATC	1 cut(s)	71
BciT130I	CCWGG	1 cut(s)	254
BcnI	CCSGG	1 cut(s)	215
BfmI	CTRYAG	1 cut(s)	72
BisI	GCNGC	1 cut(s)	199
BlsI	GCNGC	1 cut(s)	200
Bme1390I	CCNGG	2 cut(s)	215, 254
BmrFI	CCNGG	2 cut(s)	215, 254
BmsI	GCATC	2 cut(s)	191, 249
BpmI	CTGGAG	1 cut(s)	275
BpuMI	CCSGG	1 cut(s)	215
BsaAI	YACGTR	1 cut(s)	110
BsaJI	CCNNGG	1 cut(s)	214
BseBI	CCWGG	1 cut(s)	254
BseDI	CCNNGG	1 cut(s)	214
BseMII	CTCAG	1 cut(s)	324
BsiSI	CCGG	1 cut(s)	214
BsiWI	CGTACG	1 cut(s)	106
Bsp143I	GATC	2 cut(s)	132, 245
BspACI	CCGC	1 cut(s)	198
BspCNI	CTCAG	1 cut(s)	325
BspPI	GGATC	1 cut(s)	253
BssECI	CCNNGG	1 cut(s)	214
BssMI	GATC	2 cut(s)	132, 245
Bst2UI	CCWGG	1 cut(s)	254
Bst4CI	ACNGT	2 cut(s)	106, 125
Bst6I	CTCTTC	1 cut(s)	123
BstAPI	GCANNNNNTGC	1 cut(s)	17
BstBAI	YACGTR	1 cut(s)	110
BstC8I	GCNNGC	1 cut(s)	313
BstDEI	CTNAG	1 cut(s)	333
BstEII	GGTNACC	1 cut(s)	221
BstKTI	GATC	2 cut(s)	135, 248
BstMBI	GATC	2 cut(s)	132, 245
BstMWI	GCNNNNNNNGC	1 cut(s)	17
BstNI	CCWGG	1 cut(s)	254
BstPI	GGTNACC	1 cut(s)	221
BstSCI	CCNGG	2 cut(s)	213, 252
BstSFI	CTRYAG	1 cut(s)	72
BstSNI	TACGTA	1 cut(s)	110
Cac8I	GCNNGC	1 cut(s)	313
CaiI	CAGNNNCTG	1 cut(s)	332
Csp6I	GTAC	1 cut(s)	107
CviJI	RGCY	1 cut(s)	311
CviKI_1	RGCY	1 cut(s)	311
CviQI	GTAC	1 cut(s)	107
DdeI	CTNAG	1 cut(s)	333
DpnI	GATC	2 cut(s)	134, 247
DpnII	GATC	2 cut(s)	132, 245
Eam1104I	CTCTTC	1 cut(s)	123
EarI	CTCTTC	1 cut(s)	123
Eco105I	TACGTA	1 cut(s)	110
Eco57I	CTGAAG	1 cut(s)	284
Eco91I	GGTNACC	1 cut(s)	221
EcoO65I	GGTNACC	1 cut(s)	221
EcoRII	CCWGG	1 cut(s)	252
EcoT22I	ATGCAT	1 cut(s)	6
FaiI	YATR	5 cut(s)	6, 18, 100, 177, 276
Fnu4HI	GCNGC	1 cut(s)	199
Fsp4HI	GCNGC	1 cut(s)	199
GluI	GCNGC	1 cut(s)	199
GsuI	CTGGAG	1 cut(s)	275
HapII	CCGG	1 cut(s)	214
HindIII	AAGCTT	1 cut(s)	309
HinfI	GANTC	1 cut(s)	341
HpaII	CCGG	1 cut(s)	214
HphI	GGTGA	1 cut(s)	137
Hpy188I	TCNGA	3 cut(s)	187, 285, 334
HpyAV	CCTTC	2 cut(s)	236, 259
HpyCH4III	ACNGT	2 cut(s)	106, 125
HpyCH4IV	ACGT	1 cut(s)	109
HpyCH4V	TGCA	2 cut(s)	4, 20
HpyF10VI	GCNNNNNNNGC	1 cut(s)	17
HpyF3I	CTNAG	1 cut(s)	333
HpySE526I	ACGT	1 cut(s)	109
Kzo9I	GATC	2 cut(s)	132, 245
LpnPI	CCDG	5 cut(s)	227, 239, 239, 266, 290
LweI	GCATC	2 cut(s)	191, 249
MaeII	ACGT	1 cut(s)	109
MaeIII	GTNAC	4 cut(s)	32, 64, 83, 221
MalI	GATC	2 cut(s)	134, 247
MboI	GATC	2 cut(s)	132, 245
MboII	GAAGA	2 cut(s)	140, 182
MluCI	AATT	7 cut(s)	27, 49, 114, 229, 279, 286, 322
MnlI	CCTC	3 cut(s)	154, 212, 328
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	156, 320
MspI	CCGG	1 cut(s)	214
MspR9I	CCNGG	2 cut(s)	215, 254
MvaI	CCWGG	1 cut(s)	254
MwoI	GCNNNNNNNGC	1 cut(s)	17
NciI	CCSGG	1 cut(s)	215
NdeII	GATC	2 cut(s)	132, 245
NmuCI	GTSAC	1 cut(s)	32
NsiI	ATGCAT	1 cut(s)	6
PfeI	GAWTC	1 cut(s)	341
Pfl23II	CGTACG	1 cut(s)	106
PfoI	TCCNGGA	1 cut(s)	252
PkrI	GCNGC	1 cut(s)	200
Ppu21I	YACGTR	1 cut(s)	110
Psp6I	CCWGG	1 cut(s)	252
PspEI	GGTNACC	1 cut(s)	221
PspGI	CCWGG	1 cut(s)	252
PspLI	CGTACG	1 cut(s)	106
PstNI	CAGNNNCTG	1 cut(s)	332
RsaI	GTAC	1 cut(s)	108
RsaNI	GTAC	1 cut(s)	107
SaqAI	TTAA	2 cut(s)	156, 320
SatI	GCNGC	1 cut(s)	199
Sau3AI	GATC	2 cut(s)	132, 245
ScrFI	CCNGG	2 cut(s)	215, 254
SetI	ASST	8 cut(s)	17, 49, 112, 223, 228, 313, 339, 354
SfaNI	GCATC	2 cut(s)	191, 249
SfcI	CTRYAG	1 cut(s)	72
SnaBI	TACGTA	1 cut(s)	110
Sse9I	AATT	7 cut(s)	27, 49, 114, 229, 279, 286, 322
SsiI	CCGC	1 cut(s)	198
StyD4I	CCNGG	2 cut(s)	213, 252
TaaI	ACNGT	2 cut(s)	106, 125
TaiI	ACGT	1 cut(s)	112
TasI	AATT	7 cut(s)	27, 49, 114, 229, 279, 286, 322
TauI	GCSGC	1 cut(s)	201
TfiI	GAWTC	1 cut(s)	341
Tru1I	TTAA	2 cut(s)	156, 320
Tru9I	TTAA	2 cut(s)	156, 320
TseFI	GTSAC	1 cut(s)	32
Tsp45I	GTSAC	1 cut(s)	32
TspDTI	ATGAA	1 cut(s)	192
XapI	RAATTY	5 cut(s)	27, 114, 229, 279, 322
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.