Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0010607

Physical Location & Seq

Genomic Coordinates Forward (+)

77701722 .. 77702627

Gene Structure 906 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0580100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGCCTTCTTCTCTATATCACTGTGCAATGGCAACTACTAGTACTGCAGTTTTCTTTGCATTGTTGATCTTATTATGTGCAGGAGGATATGGTGAGGCTCAGCTGACCCCGACGTTCTACAATGAAGCATGCCCCGATGTGAATCTCACTAGCATTGTCCGTGGAGTCATTCAGGAAGCTTTGCAGACGGATCCACGTATCGCTGCAAGCCTCATTAGGCTTCACTTCCATGATTGCTTTGTCAATGGTTGTGATGCATCAATTTTGCTGGACAACAGTAGCAGTGTAGATGGCATAGACAGCGAGAAAGCAGCCTTTCCGAATGTCAATTCAGCGAGAGGATTTGATGTTGTGGACAAGATTAAGGCTGCATTGGAGAATGCTTGTCCCAGCACGGTTTCTTGTGCTGATATTCTTGCCATTGCAGTAGAAGAGTCTGTTTCTTTGTCTGGAGGCCCCTCATGGACAGTCCTACTAGGAAGAAGGGATGGAACAACAGCAAACCGAACCGCTGCTAATGAAGCCCTTCCAGCTCCCACTTCAAACCTTGATGTACTCAAGTCCAAGTTCTCAGCTGTAGGCCTAAACACCACCTGTTTGGACCCAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009791 GO:0009908 GO:0009987 GO:0010228 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019538 GO:0022414 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0036211 GO:0042054 GO:0042800 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048443 GO:0048466 GO:0048467 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0051276 GO:0051568 GO:0061458 GO:0071704 GO:0071840 GO:0090567 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SET

Protein Analysis

203

Amino Acids

21.27

Weight (kDa)

4.72

Isoelectric Point (pI)

38.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	53 - 197	1.2e-49	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010607)

Species	Orthologous Gene IDs
pyrus_communis	pycom09g02670 pycom17g08790
rosa_chinensis	RchiOBHm_Chr2g0131031 RchiOBHm_Chr2g0131041
rosa_laevigata	RLG00000019162 RLG00000019163
rosa_multiflora	Rmu_co8448607.1_g000001 Rmu_sc0003629.1_g000060 Rmu_sc0036661.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113280
rosa_rugosa	Rorug02G0294500.1 Rorug05G0580100
rosa_samantha	Rh2AG346900 Rh2BG354200 Rh2BG354300 Rh2CG332800 Rh2DG372300 Rh6BG135200
rosa_wichuraiana	Rw0G018960 Rw2G028120 Rw2G028160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	510
AclWI	GGATC	2 cut(s)	185, 198
AfaI	GTAC	2 cut(s)	43, 555
AgsI	TTSAA	1 cut(s)	543
AhlI	ACTAGT	1 cut(s)	38
AluBI	AGCT	4 cut(s)	103, 179, 533, 575
AluI	AGCT	4 cut(s)	103, 179, 533, 575
AlwI	GGATC	2 cut(s)	185, 198
AoxI	GGCC	2 cut(s)	454, 580
ApeKI	GCWGC	4 cut(s)	203, 311, 368, 512
Asp700I	GAANNNNTTC	1 cut(s)	525
AspS9I	GGNCC	2 cut(s)	455, 601
AsuHPI	GGTGA	1 cut(s)	104
AvaII	GGWCC	1 cut(s)	601
BamHI	GGATCC	1 cut(s)	190
BbvI	GCAGC	4 cut(s)	190, 323, 355, 499
BccI	CCATC	2 cut(s)	284, 482
BcuI	ACTAGT	1 cut(s)	38
BfaI	CTAG	3 cut(s)	39, 150, 476
BfmI	CTRYAG	2 cut(s)	45, 576
BisI	GCNGC	4 cut(s)	204, 312, 369, 513
BlpI	GCTNAGC	1 cut(s)	99
BlsI	GCNGC	4 cut(s)	205, 313, 370, 514
BmcAI	AGTACT	1 cut(s)	43
Bme18I	GGWCC	1 cut(s)	601
BmgT120I	GGNCC	2 cut(s)	455, 601
BmiI	GGNNCC	3 cut(s)	192, 457, 603
BmsI	GCATC	2 cut(s)	244, 266
BpmI	CTGGAG	1 cut(s)	471
Bpu1102I	GCTNAGC	1 cut(s)	99
BpuEI	CTTGAG	1 cut(s)	542
BsaAI	YACGTR	1 cut(s)	197
BsaBI	GATNNNNATC	1 cut(s)	141
BsaJI	CCNNGG	1 cut(s)	160
Bse3DI	GCAATG	2 cut(s)	33, 420
Bse8I	GATNNNNATC	1 cut(s)	141
BseDI	CCNNGG	1 cut(s)	160
BseGI	GGATG	1 cut(s)	493
BseJI	GATNNNNATC	1 cut(s)	141
BseMI	GCAATG	2 cut(s)	33, 420
BseMII	CTCAG	2 cut(s)	113, 585
BseXI	GCAGC	4 cut(s)	190, 323, 355, 499
BseYI	CCCAGC	1 cut(s)	389
BsgI	GTGCAG	1 cut(s)	99
BshFI	GGCC	2 cut(s)	456, 582
BslFI	GGGAC	1 cut(s)	372
BsmFI	GGGAC	1 cut(s)	372
BsmI	GAATGC	1 cut(s)	385
BsnI	GGCC	2 cut(s)	456, 582
Bsp143I	GATC	2 cut(s)	66, 190
Bsp1720I	GCTNAGC	1 cut(s)	99
BspACI	CCGC	1 cut(s)	510
BspANI	GGCC	2 cut(s)	456, 582
BspCNI	CTCAG	2 cut(s)	112, 584
BspLI	GGNNCC	3 cut(s)	192, 457, 603
BspMAI	CTGCAG	1 cut(s)	49
BspPI	GGATC	2 cut(s)	185, 198
BsrDI	GCAATG	2 cut(s)	33, 420
BssECI	CCNNGG	1 cut(s)	160
BssMI	GATC	2 cut(s)	66, 190
Bst4CI	ACNGT	4 cut(s)	23, 278, 397, 469
Bst6I	CTCTTC	1 cut(s)	426
BstBAI	YACGTR	1 cut(s)	197
BstC8I	GCNNGC	2 cut(s)	130, 208
BstDEI	CTNAG	2 cut(s)	99, 571
BstDSI	CCRYGG	1 cut(s)	160
BstF5I	GGATG	1 cut(s)	493
BstKTI	GATC	2 cut(s)	69, 193
BstMBI	GATC	2 cut(s)	66, 190
BstMWI	GCNNNNNNNGC	3 cut(s)	300, 521, 530
BstNSI	RCATGY	1 cut(s)	132
BstSFI	CTRYAG	2 cut(s)	45, 576
BstV1I	GCAGC	4 cut(s)	190, 323, 355, 499
BstX2I	RGATCY	1 cut(s)	190
BstXI	CCANNNNNNTGG	1 cut(s)	598
BstYI	RGATCY	1 cut(s)	190
BsuRI	GGCC	2 cut(s)	456, 582
BtgI	CCRYGG	1 cut(s)	160
BtsCI	GGATG	1 cut(s)	493
BtsI	GCAGTG	1 cut(s)	289
BtsIMutI	CAGTG	2 cut(s)	19, 289
Cac8I	GCNNGC	2 cut(s)	130, 208
Cfr13I	GGNCC	2 cut(s)	455, 601
Csp6I	GTAC	2 cut(s)	42, 554
CviAII	CATG	3 cut(s)	129, 230, 462
CviQI	GTAC	2 cut(s)	42, 554
DdeI	CTNAG	2 cut(s)	99, 571
DpnI	GATC	2 cut(s)	68, 192
DpnII	GATC	2 cut(s)	66, 190
Eam1104I	CTCTTC	1 cut(s)	426
EarI	CTCTTC	1 cut(s)	426
Eco147I	AGGCCT	1 cut(s)	582
Eco47I	GGWCC	1 cut(s)	601
EcoO109I	RGGNCCY	1 cut(s)	455
EcoT22I	ATGCAT	1 cut(s)	259
FaeI	CATG	3 cut(s)	132, 233, 465
FaiI	YATR	7 cut(s)	16, 76, 90, 130, 231, 296, 463
FaqI	GGGAC	1 cut(s)	372
FatI	CATG	3 cut(s)	128, 229, 461
Fnu4HI	GCNGC	4 cut(s)	204, 312, 369, 513
FokI	GGATG	1 cut(s)	500
Fsp4HI	GCNGC	4 cut(s)	204, 312, 369, 513
FspBI	CTAG	3 cut(s)	39, 150, 476
GluI	GCNGC	4 cut(s)	204, 312, 369, 513
GsaI	CCCAGC	1 cut(s)	393
GsuI	CTGGAG	1 cut(s)	471
HaeIII	GGCC	2 cut(s)	456, 582
Hin1II	CATG	3 cut(s)	132, 233, 465
HindIII	AAGCTT	1 cut(s)	177
HinfI	GANTC	3 cut(s)	142, 165, 434
HphI	GGTGA	1 cut(s)	104
Hpy166II	GTNNAC	1 cut(s)	355
Hpy188I	TCNGA	1 cut(s)	321
Hpy188III	TCNNGA	2 cut(s)	173, 450
Hpy8I	GTNNAC	1 cut(s)	355
Hpy99I	CGWCG	1 cut(s)	115
HpyAV	CCTTC	3 cut(s)	15, 477, 536
HpyCH4III	ACNGT	4 cut(s)	23, 278, 397, 469
HpyCH4IV	ACGT	2 cut(s)	113, 196
HpyCH4V	TGCA	9 cut(s)	26, 47, 59, 80, 184, 206, 257, 371, 425
HpyF10VI	GCNNNNNNNGC	3 cut(s)	300, 521, 530
HpyF3I	CTNAG	2 cut(s)	99, 571
HpySE526I	ACGT	2 cut(s)	113, 196
Hsp92II	CATG	3 cut(s)	132, 233, 465
Kzo9I	GATC	2 cut(s)	66, 190
LmnI	GCTCC	1 cut(s)	538
LpnPI	CCDG	7 cut(s)	66, 158, 254, 403, 435, 543, 607
Lsp1109I	GCAGC	4 cut(s)	190, 323, 355, 499
LweI	GCATC	2 cut(s)	244, 266
MaeI	CTAG	3 cut(s)	39, 150, 476
MaeII	ACGT	2 cut(s)	113, 196
MalI	GATC	2 cut(s)	68, 192
MboI	GATC	2 cut(s)	66, 190
MboII	GAAGA	2 cut(s)	443, 492
MflI	RGATCY	1 cut(s)	190
MluCI	AATT	2 cut(s)	261, 328
MlyI	GAGTC	2 cut(s)	174, 443
MnlI	CCTC	6 cut(s)	77, 88, 221, 332, 446, 469
Mph1103I	ATGCAT	1 cut(s)	259
MroXI	GAANNNNTTC	1 cut(s)	525
MseI	TTAA	1 cut(s)	363
MslI	CAYNNNNRTG	1 cut(s)	228
MspA1I	CMGCKG	3 cut(s)	103, 512, 575
Mva1269I	GAATGC	1 cut(s)	385
MwoI	GCNNNNNNNGC	3 cut(s)	300, 521, 530
NdeII	GATC	2 cut(s)	66, 190
NlaIII	CATG	3 cut(s)	132, 233, 465
NlaIV	GGNNCC	3 cut(s)	192, 457, 603
NsiI	ATGCAT	1 cut(s)	259
NspI	RCATGY	1 cut(s)	132
PaeI	GCATGC	1 cut(s)	132
PceI	AGGCCT	1 cut(s)	582
PctI	GAATGC	1 cut(s)	385
PdmI	GAANNNNTTC	1 cut(s)	525
PfeI	GAWTC	1 cut(s)	142
PkrI	GCNGC	4 cut(s)	205, 313, 370, 514
PleI	GAGTC	2 cut(s)	173, 442
PpsI	GAGTC	2 cut(s)	173, 442
Ppu21I	YACGTR	1 cut(s)	197
PspFI	CCCAGC	1 cut(s)	389
PspN4I	GGNNCC	3 cut(s)	192, 457, 603
PspPI	GGNCC	2 cut(s)	455, 601
PstI	CTGCAG	1 cut(s)	49
PsuI	RGATCY	1 cut(s)	190
PvuII	CAGCTG	2 cut(s)	103, 575
RsaI	GTAC	2 cut(s)	43, 555
RsaNI	GTAC	2 cut(s)	42, 554
RseI	CAYNNNNRTG	1 cut(s)	228
SaqAI	TTAA	1 cut(s)	363
SatI	GCNGC	4 cut(s)	204, 312, 369, 513
Sau3AI	GATC	2 cut(s)	66, 190
Sau96I	GGNCC	2 cut(s)	455, 601
ScaI	AGTACT	1 cut(s)	43
SchI	GAGTC	2 cut(s)	174, 443
SetI	ASST	8 cut(s)	105, 116, 181, 199, 535, 549, 577, 596
SfaNI	GCATC	2 cut(s)	244, 266
SfcI	CTRYAG	2 cut(s)	45, 576
SinI	GGWCC	1 cut(s)	601
SmiMI	CAYNNNNRTG	1 cut(s)	228
SmlI	CTYRAG	1 cut(s)	557
SmoI	CTYRAG	1 cut(s)	557
SpeI	ACTAGT	1 cut(s)	38
SphI	GCATGC	1 cut(s)	132
Sse9I	AATT	2 cut(s)	261, 328
SseBI	AGGCCT	1 cut(s)	582
SsiI	CCGC	1 cut(s)	510
SspMI	CTAG	3 cut(s)	39, 150, 476
StuI	AGGCCT	1 cut(s)	582
TaaI	ACNGT	4 cut(s)	23, 278, 397, 469
TaiI	ACGT	2 cut(s)	116, 199
TasI	AATT	2 cut(s)	261, 328
TatI	WGTACW	2 cut(s)	41, 553
TfiI	GAWTC	1 cut(s)	142
Tru1I	TTAA	1 cut(s)	363
Tru9I	TTAA	1 cut(s)	363
TscAI	CASTG	2 cut(s)	26, 289
TseI	GCWGC	4 cut(s)	203, 311, 368, 512
TspDTI	ATGAA	2 cut(s)	138, 534
TspGWI	ACGGA	2 cut(s)	149, 203
TspRI	CASTG	2 cut(s)	26, 289
VpaK11BI	GGWCC	1 cut(s)	601
XceI	RCATGY	1 cut(s)	132
XmnI	GAANNNNTTC	1 cut(s)	525
XspI	CTAG	3 cut(s)	39, 150, 476
ZrmI	AGTACT	1 cut(s)	43
Zsp2I	ATGCAT	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.