Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0006529

Physical Location & Seq

Genomic Coordinates Forward (+)

10534626 .. 10535589

Gene Structure 964 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGTGGTCAAGGTGTACGGCCCTTTCTACGCTTCGCCGAAGCGTGTGCTGGTGTGCCTTGTTGAGAAGGAGATTGAATTTGAGACCAGCCCCATTGATCTCTTCAAGGGTGAACACAAATCTCCGGAATTTCTCAAATTACAGCCCTTTGGACAAGTTCCTGTTATCCAAGATGGGGATTATACTTTGTATGAATCTCGCGCAATCATAAGGTACTATGCCGAAAAATACAAATCCCAGGGGACTGATTTACTTGGAAAGACAATTGAGGAAAGAGGTCTTGTGGAACAGTGGCTAGAGGTTGAAGCAAGCAACTATCACCCGCCACTCGACAACTTGGTCATGCACATTTTGTTTGCCTCGGCATTGGGATTTCCGTCAGACCCGAAGATCGATCCAGGAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004364 GO:0004601 GO:0004602 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009636 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0016209 GO:0016491 GO:0016684 GO:0016740 GO:0016765 GO:0019748 GO:0030054 GO:0030312 GO:0033218 GO:0034641 GO:0042221 GO:0042277 GO:0042742 GO:0043167 GO:0043168 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043295 GO:0043603 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048037 GO:0048046 GO:0050896 GO:0051186 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071704 GO:0071944 GO:0072341 GO:0097237 GO:0098542 GO:0098754 GO:0098869 GO:1900750 GO:1901564 GO:1901681 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N

Protein Analysis

136

Amino Acids

15.39

Weight (kDa)

4.98

Isoelectric Point (pI)

63.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	1 - 74	1.1e-17	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	9 - 78	4.6e-12	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	14 - 75	4.6e-15	Glutathione S-transferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30860 AT2G30860
fragaria_vesca	FvH4_6g38760
malus_domestica	MD09G1147100.v1.1 MD09G1147300.v1.1 MD09G1147400.v1.1 MD17G1133600.v1.1 MD17G1133800.v1.1 MD17G1134300.v1.1
prunus_persica	Prupe.3G178100_v2.0.a1 Prupe.3G178200_v2.0.a1 Prupe.3G178300_v2.0.a1
pyrus_communis	pycom09g06760 pycom17g12830 pycom17g12850
rosa_chinensis	RchiOBHm_Chr2g0152311
rosa_laevigata	RLG00000020627
rosa_multiflora	Rmu_sc0004002.1_g000002
rosa_rugosa	Rorug02G0432000 Rorug02G0432100 Rorug02G0432200
rosa_samantha	Rh2AG493800 Rh2BG506100 Rh2CG480100 Rh2DG517200
rosa_wichuraiana	Rw2G040610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	338
AccII	CGCG	1 cut(s)	201
AccIII	TCCGGA	1 cut(s)	124
AciI	CCGC	1 cut(s)	323
AclWI	GGATC	1 cut(s)	389
AcsI	RAATTY	2 cut(s)	77, 128
AfaI	GTAC	2 cut(s)	17, 215
AfiI	CCNNNNNNNGG	1 cut(s)	175
AgsI	TTSAA	3 cut(s)	77, 106, 305
AjnI	CCWGG	2 cut(s)	237, 397
Alw26I	GTCTC	1 cut(s)	77
AlwI	GGATC	1 cut(s)	389
Aor13HI	TCCGGA	1 cut(s)	124
AoxI	GGCC	1 cut(s)	19
ApoI	RAATTY	2 cut(s)	77, 128
AspLEI	GCGC	1 cut(s)	203
AspS9I	GGNCC	1 cut(s)	20
AsuHPI	GGTGA	2 cut(s)	122, 311
BccI	CCATC	1 cut(s)	167
BceAI	ACGGC	1 cut(s)	34
BcgI	CGANNNNNNTGC	2 cut(s)	28, 62
BciT130I	CCWGG	2 cut(s)	239, 399
BcoDI	GTCTC	1 cut(s)	77
BfaI	CTAG	1 cut(s)	296
Bme1390I	CCNGG	2 cut(s)	239, 399
BmgT120I	GGNCC	1 cut(s)	20
BmrFI	CCNGG	2 cut(s)	239, 399
Bsa29I	ATCGAT	1 cut(s)	393
BsaI	GGTCTC	1 cut(s)	77
BsaJI	CCNNGG	3 cut(s)	237, 238, 360
BsaWI	WCCGGW	1 cut(s)	124
Bsc4I	CCNNNNNNNGG	1 cut(s)	175
BseAI	TCCGGA	1 cut(s)	124
BseBI	CCWGG	2 cut(s)	239, 399
BseCI	ATCGAT	1 cut(s)	393
BseDI	CCNNGG	3 cut(s)	237, 238, 360
BseLI	CCNNNNNNNGG	1 cut(s)	175
Bsh1236I	CGCG	1 cut(s)	201
BshFI	GGCC	1 cut(s)	21
BshVI	ATCGAT	1 cut(s)	393
BsiSI	CCGG	1 cut(s)	125
BslFI	GGGAC	1 cut(s)	256
BslI	CCNNNNNNNGG	1 cut(s)	175
BsmAI	GTCTC	1 cut(s)	77
BsmFI	GGGAC	1 cut(s)	256
BsnI	GGCC	1 cut(s)	21
Bso31I	GGTCTC	1 cut(s)	77
Bsp13I	TCCGGA	1 cut(s)	124
Bsp143I	GATC	3 cut(s)	97, 390, 394
BspACI	CCGC	1 cut(s)	323
BspANI	GGCC	1 cut(s)	21
BspDI	ATCGAT	1 cut(s)	393
BspEI	TCCGGA	1 cut(s)	124
BspFNI	CGCG	1 cut(s)	201
BspPI	GGATC	1 cut(s)	389
BspTNI	GGTCTC	1 cut(s)	77
BssECI	CCNNGG	3 cut(s)	237, 238, 360
BssMI	GATC	3 cut(s)	97, 390, 394
Bst2UI	CCWGG	2 cut(s)	239, 399
Bst4CI	ACNGT	1 cut(s)	291
Bst6I	CTCTTC	1 cut(s)	107
BstC8I	GCNNGC	1 cut(s)	310
BstFNI	CGCG	1 cut(s)	201
BstHHI	GCGC	1 cut(s)	203
BstKTI	GATC	3 cut(s)	100, 393, 397
BstMAI	GTCTC	1 cut(s)	77
BstMBI	GATC	3 cut(s)	97, 390, 394
BstNI	CCWGG	2 cut(s)	239, 399
BstSCI	CCNGG	2 cut(s)	237, 397
BstUI	CGCG	1 cut(s)	201
Bsu15I	ATCGAT	1 cut(s)	393
BsuRI	GGCC	1 cut(s)	21
BsuTUI	ATCGAT	1 cut(s)	393
BtsIMutI	CAGTG	1 cut(s)	296
Cac8I	GCNNGC	1 cut(s)	310
CfoI	GCGC	1 cut(s)	203
Cfr13I	GGNCC	1 cut(s)	20
ClaI	ATCGAT	1 cut(s)	393
Csp6I	GTAC	2 cut(s)	16, 214
CviAII	CATG	1 cut(s)	343
CviJI	RGCY	4 cut(s)	21, 90, 145, 295
CviKI_1	RGCY	4 cut(s)	21, 90, 145, 295
CviQI	GTAC	2 cut(s)	16, 214
DpnI	GATC	3 cut(s)	99, 392, 396
DpnII	GATC	3 cut(s)	97, 390, 394
DrdI	GACNNNNNNGTC	1 cut(s)	338
DseDI	GACNNNNNNGTC	1 cut(s)	338
Eam1104I	CTCTTC	1 cut(s)	107
EarI	CTCTTC	1 cut(s)	107
Eco31I	GGTCTC	1 cut(s)	77
EcoRII	CCWGG	2 cut(s)	237, 397
FaeI	CATG	1 cut(s)	346
FaiI	YATR	5 cut(s)	183, 192, 209, 219, 344
FaqI	GGGAC	1 cut(s)	256
FatI	CATG	1 cut(s)	342
FauI	CCCGC	1 cut(s)	330
FspBI	CTAG	1 cut(s)	296
GlaI	GCGC	1 cut(s)	202
HaeIII	GGCC	1 cut(s)	21
HapII	CCGG	1 cut(s)	125
HhaI	GCGC	1 cut(s)	203
Hin1II	CATG	1 cut(s)	346
Hin6I	GCGC	1 cut(s)	201
HinP1I	GCGC	1 cut(s)	201
HinfI	GANTC	1 cut(s)	194
HpaII	CCGG	1 cut(s)	125
HphI	GGTGA	2 cut(s)	122, 311
Hpy166II	GTNNAC	2 cut(s)	16, 113
Hpy188I	TCNGA	1 cut(s)	382
Hpy188III	TCNNGA	1 cut(s)	125
Hpy8I	GTNNAC	2 cut(s)	16, 113
HpyAV	CCTTC	1 cut(s)	61
HpyCH4III	ACNGT	1 cut(s)	291
HpyCH4V	TGCA	1 cut(s)	346
Hsp92II	CATG	1 cut(s)	346
HspAI	GCGC	1 cut(s)	201
Kpn2I	TCCGGA	1 cut(s)	124
Kzo9I	GATC	3 cut(s)	97, 390, 394
LpnPI	CCDG	7 cut(s)	35, 100, 138, 174, 224, 251, 384
MaeI	CTAG	1 cut(s)	296
MalI	GATC	3 cut(s)	99, 392, 396
MboI	GATC	3 cut(s)	97, 390, 394
MboII	GAAGA	2 cut(s)	94, 400
MfeI	CAATTG	1 cut(s)	264
MluCI	AATT	4 cut(s)	77, 128, 137, 264
MnlI	CCTC	4 cut(s)	262, 269, 292, 370
MroI	TCCGGA	1 cut(s)	124
MspI	CCGG	1 cut(s)	125
MspR9I	CCNGG	2 cut(s)	239, 399
MunI	CAATTG	1 cut(s)	264
MvaI	CCWGG	2 cut(s)	239, 399
MvnI	CGCG	1 cut(s)	201
NdeII	GATC	3 cut(s)	97, 390, 394
NlaIII	CATG	1 cut(s)	346
NmeAIII	GCCGAG	1 cut(s)	341
PasI	CCCWGGG	1 cut(s)	238
PfeI	GAWTC	1 cut(s)	194
PfoI	TCCNGGA	1 cut(s)	397
Psp6I	CCWGG	2 cut(s)	237, 397
PspGI	CCWGG	2 cut(s)	237, 397
PspPI	GGNCC	1 cut(s)	20
RsaI	GTAC	2 cut(s)	17, 215
RsaNI	GTAC	2 cut(s)	16, 214
Sau3AI	GATC	3 cut(s)	97, 390, 394
Sau96I	GGNCC	1 cut(s)	20
ScrFI	CCNGG	2 cut(s)	239, 399
SetI	ASST	4 cut(s)	15, 215, 280, 303
Sse9I	AATT	4 cut(s)	77, 128, 137, 264
SsiI	CCGC	1 cut(s)	323
SspMI	CTAG	1 cut(s)	296
StyD4I	CCNGG	2 cut(s)	237, 397
TaaI	ACNGT	1 cut(s)	291
TaqI	TCGA	2 cut(s)	330, 393
TasI	AATT	4 cut(s)	77, 128, 137, 264
TfiI	GAWTC	1 cut(s)	194
TscAI	CASTG	1 cut(s)	296
TspDTI	ATGAA	1 cut(s)	207
TspGWI	ACGGA	1 cut(s)	366
TspRI	CASTG	1 cut(s)	296
XapI	RAATTY	2 cut(s)	77, 128
XspI	CTAG	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.