Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0006529

Physical Location & Seq

Genomic Coordinates Forward (+)

10560141 .. 10562650

Gene Structure 2510 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGTGGTGAAGGTGTATGGGCCTCTGTACGCGGCCCCAAAGCGTGTGCTGGTATGCCTTGTTGAGAAAGAGGTTGACTTTGAGACAGTCCCCATTGATCTTCTCAAGGGAGAGAACAAACACCCTGATTTCCTCAAGTTACAGGCAGCCATTTGGAACAGTTCCTCTCATTCAAGATGGGGATTATACTCTATATGGTACTATGCAGAAAAATATAAGTCACAAGGGACTGATTTGCTGGGAAAGACAATTGAGGAAAGAGGGCTTGTGGAGCAATGGCTAGAAGTTGAAGCACACAACTTCCAGCCACCAATCTACAACTTGGTCGTTCACATTCTCTTTGCCCCAGTTTTGGGTTTTCCTTCAGACCCCAAGATCTTACAAGAGAGTGAAGAAAAGCTGGGAAAAGTGCTGGACATTTACGAGGAGCAGCTGTCAAAGAGCAAGTACTTGGCCGGTGATTTCTTCAGCCTTGCTGATCTTAGCCACCTTCCATTCACTCACTTCTTGGTGGCTAATATGGGGAAGGAGTATATGATCAGGGACAGAAAGCATGTCTCTGCATGGTGGGATGACATTAGCAACAGACCATCTTGGAAGAGGGTCCTACAGTTTGGTGACCCATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004364 GO:0004601 GO:0004602 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009636 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0016209 GO:0016491 GO:0016684 GO:0016740 GO:0016765 GO:0019748 GO:0030054 GO:0030312 GO:0033218 GO:0034641 GO:0042221 GO:0042277 GO:0042742 GO:0043167 GO:0043168 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043295 GO:0043603 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048037 GO:0048046 GO:0050896 GO:0051186 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071704 GO:0071944 GO:0072341 GO:0097237 GO:0098542 GO:0098754 GO:0098869 GO:1900750 GO:1901564 GO:1901681 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N

Protein Analysis

210

Amino Acids

24.26

Weight (kDa)

5.98

Isoelectric Point (pI)

48.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_C	PF00043	113 - 197	3.3e-13	Glutathione S-transferase, C-terminal domain
GST_C_3	PF14497	130 - 199	4.7e-06	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30860 AT2G30860
fragaria_vesca	FvH4_6g38760
malus_domestica	MD09G1147100.v1.1 MD09G1147300.v1.1 MD09G1147400.v1.1 MD17G1133600.v1.1 MD17G1133800.v1.1 MD17G1134300.v1.1
prunus_persica	Prupe.3G178100_v2.0.a1 Prupe.3G178200_v2.0.a1 Prupe.3G178300_v2.0.a1
pyrus_communis	pycom09g06760 pycom17g12830 pycom17g12850
rosa_chinensis	RchiOBHm_Chr2g0152311
rosa_laevigata	RLG00000020627
rosa_multiflora	Rmu_sc0004002.1_g000002
rosa_rugosa	Rorug02G0432000 Rorug02G0432100 Rorug02G0432200
rosa_samantha	Rh2AG493800 Rh2BG506100 Rh2CG480100 Rh2DG517200
rosa_wichuraiana	Rw2G040610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	32
AciI	CCGC	1 cut(s)	32
AcoI	YGGCCR	1 cut(s)	453
AcuI	CTGAAG	2 cut(s)	348, 451
AfaI	GTAC	3 cut(s)	29, 200, 449
AfiI	CCNNNNNNNGG	2 cut(s)	352, 353
AgsI	TTSAA	2 cut(s)	174, 290
AluBI	AGCT	2 cut(s)	400, 433
AluI	AGCT	2 cut(s)	400, 433
Alw26I	GTCTC	2 cut(s)	77, 562
AoxI	GGCC	3 cut(s)	20, 33, 453
ApeKI	GCWGC	2 cut(s)	146, 430
AspS9I	GGNCC	3 cut(s)	20, 34, 604
AsuHPI	GGTGA	3 cut(s)	19, 470, 629
AvaII	GGWCC	1 cut(s)	604
BbvI	GCAGC	2 cut(s)	158, 442
BccI	CCATC	2 cut(s)	171, 598
BclI	TGATCA	1 cut(s)	537
BcoDI	GTCTC	2 cut(s)	77, 562
BfaI	CTAG	1 cut(s)	281
BfmI	CTRYAG	1 cut(s)	608
BglII	AGATCT	1 cut(s)	375
BisI	GCNGC	3 cut(s)	33, 147, 431
BlsI	GCNGC	3 cut(s)	34, 148, 432
BmcAI	AGTACT	1 cut(s)	449
Bme18I	GGWCC	1 cut(s)	604
BmgT120I	GGNCC	3 cut(s)	20, 34, 604
BmiI	GGNNCC	2 cut(s)	36, 605
BmrI	ACTGGG	1 cut(s)	341
BmuI	ACTGGG	1 cut(s)	341
BpuEI	CTTGAG	2 cut(s)	89, 119
BsaXI	ACNNNNNCTCC	2 cut(s)	419, 449
Bsc4I	CCNNNNNNNGG	2 cut(s)	352, 353
Bse118I	RCCGGY	1 cut(s)	455
Bse1I	ACTGG	1 cut(s)	347
Bse3DI	GCAATG	1 cut(s)	281
BseGI	GGATG	1 cut(s)	577
BseLI	CCNNNNNNNGG	2 cut(s)	352, 353
BseMI	GCAATG	1 cut(s)	281
BseNI	ACTGG	1 cut(s)	347
BseRI	GAGGAG	1 cut(s)	440
BseXI	GCAGC	2 cut(s)	158, 442
BseYI	CCCAGC	2 cut(s)	238, 400
Bsh1236I	CGCG	1 cut(s)	32
BshFI	GGCC	3 cut(s)	22, 35, 455
BsiSI	CCGG	1 cut(s)	456
BslFI	GGGAC	3 cut(s)	74, 241, 557
BslI	CCNNNNNNNGG	2 cut(s)	352, 353
BsmAI	GTCTC	2 cut(s)	77, 562
BsmFI	GGGAC	3 cut(s)	74, 241, 557
BsnI	GGCC	3 cut(s)	22, 35, 455
Bsp143I	GATC	4 cut(s)	97, 375, 478, 537
BspACI	CCGC	1 cut(s)	32
BspANI	GGCC	3 cut(s)	22, 35, 455
BspFNI	CGCG	1 cut(s)	32
BspLI	GGNNCC	2 cut(s)	36, 605
BsrDI	GCAATG	1 cut(s)	281
BsrFI	RCCGGY	1 cut(s)	455
BsrI	ACTGG	1 cut(s)	347
BssAI	RCCGGY	1 cut(s)	455
BssMI	GATC	4 cut(s)	97, 375, 478, 537
Bst4CI	ACNGT	3 cut(s)	88, 161, 612
Bst6I	CTCTTC	1 cut(s)	593
BstDEI	CTNAG	1 cut(s)	482
BstEII	GGTNACC	1 cut(s)	617
BstF5I	GGATG	1 cut(s)	577
BstFNI	CGCG	1 cut(s)	32
BstKTI	GATC	4 cut(s)	100, 378, 481, 540
BstMAI	GTCTC	2 cut(s)	77, 562
BstMBI	GATC	4 cut(s)	97, 375, 478, 537
BstMWI	GCNNNNNNNGC	1 cut(s)	271
BstNSI	RCATGY	1 cut(s)	557
BstPI	GGTNACC	1 cut(s)	617
BstSFI	CTRYAG	1 cut(s)	608
BstUI	CGCG	1 cut(s)	32
BstV1I	GCAGC	2 cut(s)	158, 442
BstX2I	RGATCY	1 cut(s)	375
BstYI	RGATCY	1 cut(s)	375
BsuRI	GGCC	3 cut(s)	22, 35, 455
BtsCI	GGATG	1 cut(s)	577
Cfr10I	RCCGGY	1 cut(s)	455
Cfr13I	GGNCC	3 cut(s)	20, 34, 604
Csp6I	GTAC	3 cut(s)	28, 199, 448
CviAII	CATG	2 cut(s)	554, 564
CviQI	GTAC	3 cut(s)	28, 199, 448
DdeI	CTNAG	1 cut(s)	482
DpnI	GATC	4 cut(s)	99, 377, 480, 539
DpnII	GATC	4 cut(s)	97, 375, 478, 537
EaeI	YGGCCR	1 cut(s)	453
Eam1104I	CTCTTC	1 cut(s)	593
EarI	CTCTTC	1 cut(s)	593
Eco47I	GGWCC	1 cut(s)	604
Eco57I	CTGAAG	2 cut(s)	348, 451
Eco91I	GGTNACC	1 cut(s)	617
EcoO109I	RGGNCCY	1 cut(s)	604
EcoO65I	GGTNACC	1 cut(s)	617
FaeI	CATG	2 cut(s)	557, 567
FaqI	GGGAC	3 cut(s)	74, 241, 557
FatI	CATG	2 cut(s)	553, 563
FbaI	TGATCA	1 cut(s)	537
Fnu4HI	GCNGC	3 cut(s)	33, 147, 431
FokI	GGATG	1 cut(s)	584
Fsp4HI	GCNGC	3 cut(s)	33, 147, 431
FspBI	CTAG	1 cut(s)	281
GluI	GCNGC	3 cut(s)	33, 147, 431
GsaI	CCCAGC	2 cut(s)	242, 404
HaeIII	GGCC	3 cut(s)	22, 35, 455
HapII	CCGG	1 cut(s)	456
Hin1II	CATG	2 cut(s)	557, 567
HincII	GTYRAC	1 cut(s)	76
HindII	GTYRAC	1 cut(s)	76
HpaII	CCGG	1 cut(s)	456
HphI	GGTGA	3 cut(s)	19, 470, 629
Hpy166II	GTNNAC	2 cut(s)	76, 331
Hpy188I	TCNGA	1 cut(s)	367
Hpy188III	TCNNGA	1 cut(s)	174
Hpy8I	GTNNAC	2 cut(s)	76, 331
HpyAV	CCTTC	4 cut(s)	4, 372, 500, 520
HpyCH4III	ACNGT	3 cut(s)	88, 161, 612
HpyCH4V	TGCA	2 cut(s)	206, 563
HpyF10VI	GCNNNNNNNGC	1 cut(s)	271
HpyF3I	CTNAG	1 cut(s)	482
Hsp92II	CATG	2 cut(s)	557, 567
Ksp22I	TGATCA	1 cut(s)	537
Kzo9I	GATC	4 cut(s)	97, 375, 478, 537
LmnI	GCTCC	2 cut(s)	271, 427
Lsp1109I	GCAGC	2 cut(s)	158, 442
MaeI	CTAG	1 cut(s)	281
MaeIII	GTNAC	3 cut(s)	138, 219, 617
MalI	GATC	4 cut(s)	99, 377, 480, 539
MboI	GATC	4 cut(s)	97, 375, 478, 537
MboII	GAAGA	4 cut(s)	92, 404, 457, 610
MfeI	CAATTG	1 cut(s)	249
MflI	RGATCY	1 cut(s)	375
MluCI	AATT	1 cut(s)	249
MnlI	CCTC	8 cut(s)	33, 64, 143, 175, 247, 254, 418, 594
MseI	TTAA	1 cut(s)	628
MspA1I	CMGCKG	1 cut(s)	433
MspI	CCGG	1 cut(s)	456
MunI	CAATTG	1 cut(s)	249
MvnI	CGCG	1 cut(s)	32
MwoI	GCNNNNNNNGC	1 cut(s)	271
NdeII	GATC	4 cut(s)	97, 375, 478, 537
NlaIII	CATG	2 cut(s)	557, 567
NlaIV	GGNNCC	2 cut(s)	36, 605
NmuCI	GTSAC	2 cut(s)	219, 617
NspI	RCATGY	1 cut(s)	557
PkrI	GCNGC	3 cut(s)	34, 148, 432
PpuMI	RGGWCCY	1 cut(s)	604
Psp5II	RGGWCCY	1 cut(s)	604
PspEI	GGTNACC	1 cut(s)	617
PspFI	CCCAGC	2 cut(s)	238, 400
PspN4I	GGNNCC	2 cut(s)	36, 605
PspPI	GGNCC	3 cut(s)	20, 34, 604
PspPPI	RGGWCCY	1 cut(s)	604
PsuI	RGATCY	1 cut(s)	375
PvuII	CAGCTG	1 cut(s)	433
RsaI	GTAC	3 cut(s)	29, 200, 449
RsaNI	GTAC	3 cut(s)	28, 199, 448
SaqAI	TTAA	1 cut(s)	628
SatI	GCNGC	3 cut(s)	33, 147, 431
Sau3AI	GATC	4 cut(s)	97, 375, 478, 537
Sau96I	GGNCC	3 cut(s)	20, 34, 604
ScaI	AGTACT	1 cut(s)	449
SetI	ASST	5 cut(s)	15, 75, 402, 435, 492
SfcI	CTRYAG	1 cut(s)	608
SinI	GGWCC	1 cut(s)	604
SmlI	CTYRAG	2 cut(s)	104, 134
SmoI	CTYRAG	2 cut(s)	104, 134
Sse9I	AATT	1 cut(s)	249
SsiI	CCGC	1 cut(s)	32
SspMI	CTAG	1 cut(s)	281
TaaI	ACNGT	3 cut(s)	88, 161, 612
TasI	AATT	1 cut(s)	249
TatI	WGTACW	1 cut(s)	447
TauI	GCSGC	1 cut(s)	35
Tru1I	TTAA	1 cut(s)	628
Tru9I	TTAA	1 cut(s)	628
TseFI	GTSAC	2 cut(s)	219, 617
TseI	GCWGC	2 cut(s)	146, 430
Tsp45I	GTSAC	2 cut(s)	219, 617
VpaK11BI	GGWCC	1 cut(s)	604
XceI	RCATGY	1 cut(s)	557
XspI	CTAG	1 cut(s)	281
ZrmI	AGTACT	1 cut(s)	449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.