pycom17g13490

HVA22-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0004600
Physical Location & Seq
Forward (+)
11094931 .. 11096228
1298 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 471 bp
ATGGGTGTTCTTGGAGTCATTGCTAAAAATTTGGATACAATAATCGGGCCAGGAGTGATGCTTCTTTATCCATTGTATGCATCAATGAGAGCAATCGAGAGCCCTTCAGCACTCGACGAACAACAGTGGCTACCATATTGGGTTATATACTCTTTCATAACCTTATTCGAACTATCCTTCTGGAAAGTACTAGCTTGGATTCCAATATGGCCATATATGAAGCTGTTATTTTGCATGTGGTTGGTGCTGCCAATTTTCAATGGGGCAGCCTATGTTTATGAGAACGTTGTGAGGAAGTATGTGAAGCTTGGAGACCATTTGAGCTCAAACTATCCAGCGGGTCAGAAGAAGGTCCTGCAGATGATGAGCCTTGACGCAAGGAAGCATGTCGAACACTTCATCGATCAATATGGAGTTGAAGCTTTCGAAAGAGTCGTCAAAGCAGCTGAAAGAGAAGCTAGGAGGCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TB2_DP1_HVA22

Protein Analysis

157

Amino Acids

18.16

Weight (kDa)

8.61

Isoelectric Point (pI)

34.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TB2_DP1_HVA22 PF03134 24 - 100 2.8e-26 TB2/DP1, HVA22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 338
AclI AACGTT 1 cut(s) 285
AcoI YGGCCR 1 cut(s) 209
AcsI RAATTY 1 cut(s) 28
AcuI CTGAAG 1 cut(s) 90
AfaI GTAC 1 cut(s) 189
AgsI TTSAA 2 cut(s) 259, 419
AjnI CCWGG 1 cut(s) 49
AluBI AGCT 7 cut(s) 194, 223, 307, 324, 422, 446, 458
AluI AGCT 7 cut(s) 194, 223, 307, 324, 422, 446, 458
Alw21I GWGCWC 1 cut(s) 326
Alw26I GTCTC 1 cut(s) 306
AoxI GGCC 2 cut(s) 47, 209
ApeKI GCWGC 3 cut(s) 247, 266, 443
ApoI RAATTY 1 cut(s) 28
ArsI GACNNNNNNTTYG 2 cut(s) 420, 452
AspS9I GGNCC 2 cut(s) 47, 352
AsuII TTCGAA 2 cut(s) 168, 426
AvaII GGWCC 1 cut(s) 352
BalI TGGCCA 1 cut(s) 211
BanII GRGCYC 2 cut(s) 104, 326
Bbv12I GWGCWC 1 cut(s) 326
BbvI GCAGC 3 cut(s) 234, 278, 455
BciT130I CCWGG 1 cut(s) 51
BciVI GTATCC 1 cut(s) 28
BcoDI GTCTC 1 cut(s) 306
BfaI CTAG 2 cut(s) 191, 459
BfmI CTRYAG 1 cut(s) 356
BfuI GTATCC 1 cut(s) 28
BisI GCNGC 3 cut(s) 248, 267, 444
BlsI GCNGC 3 cut(s) 249, 268, 445
BmcAI AGTACT 1 cut(s) 189
Bme1390I CCNGG 1 cut(s) 51
Bme18I GGWCC 1 cut(s) 352
BmgT120I GGNCC 2 cut(s) 47, 352
BmrFI CCNGG 1 cut(s) 51
BmsI GCATC 2 cut(s) 48, 89
Bpu14I TTCGAA 2 cut(s) 168, 426
Bsa29I ATCGAT 1 cut(s) 402
BsaI GGTCTC 1 cut(s) 306
Bse3DI GCAATG 1 cut(s) 18
BseBI CCWGG 1 cut(s) 51
BseCI ATCGAT 1 cut(s) 402
BseMI GCAATG 1 cut(s) 18
BseXI GCAGC 3 cut(s) 234, 278, 455
BshFI GGCC 2 cut(s) 49, 211
BshVI ATCGAT 1 cut(s) 402
BsiHKAI GWGCWC 1 cut(s) 326
BsmAI GTCTC 1 cut(s) 306
BsnI GGCC 2 cut(s) 49, 211
Bso31I GGTCTC 1 cut(s) 306
Bsp119I TTCGAA 2 cut(s) 168, 426
Bsp1286I GDGCHC 2 cut(s) 104, 326
Bsp143I GATC 1 cut(s) 403
BspACI CCGC 1 cut(s) 338
BspANI GGCC 2 cut(s) 49, 211
BspDI ATCGAT 1 cut(s) 402
BspMAI CTGCAG 1 cut(s) 360
BspT104I TTCGAA 2 cut(s) 168, 426
BspTNI GGTCTC 1 cut(s) 306
BsrDI GCAATG 1 cut(s) 18
BssMI GATC 1 cut(s) 403
Bst2UI CCWGG 1 cut(s) 51
Bst4CI ACNGT 1 cut(s) 126
BstBI TTCGAA 2 cut(s) 168, 426
BstKTI GATC 1 cut(s) 406
BstMAI GTCTC 1 cut(s) 306
BstMBI GATC 1 cut(s) 403
BstNI CCWGG 1 cut(s) 51
BstNSI RCATGY 2 cut(s) 238, 389
BstSCI CCNGG 1 cut(s) 49
BstSFI CTRYAG 1 cut(s) 356
BstV1I GCAGC 3 cut(s) 234, 278, 455
Bsu15I ATCGAT 1 cut(s) 402
BsuI GTATCC 1 cut(s) 28
BsuRI GGCC 2 cut(s) 49, 211
BsuTUI ATCGAT 1 cut(s) 402
BtsIMutI CAGTG 2 cut(s) 131, 466
Cfr13I GGNCC 2 cut(s) 47, 352
ClaI ATCGAT 1 cut(s) 402
CseI GACGC 1 cut(s) 383
Csp6I GTAC 1 cut(s) 188
CviAII CATG 2 cut(s) 235, 386
CviQI GTAC 1 cut(s) 188
DpnI GATC 1 cut(s) 405
DpnII GATC 1 cut(s) 403
EaeI YGGCCR 1 cut(s) 209
Ecl136II GAGCTC 1 cut(s) 324
Eco24I GRGCYC 2 cut(s) 104, 326
Eco31I GGTCTC 1 cut(s) 306
Eco47I GGWCC 1 cut(s) 352
Eco53kI GAGCTC 1 cut(s) 324
Eco57I CTGAAG 1 cut(s) 90
EcoICRI GAGCTC 1 cut(s) 324
EcoO109I RGGNCCY 1 cut(s) 352
EcoRII CCWGG 1 cut(s) 49
EcoT22I ATGCAT 1 cut(s) 82
EcoT38I GRGCYC 2 cut(s) 104, 326
FaeI CATG 2 cut(s) 238, 389
FatI CATG 2 cut(s) 234, 385
FauI CCCGC 1 cut(s) 331
Fnu4HI GCNGC 3 cut(s) 248, 267, 444
FriOI GRGCYC 2 cut(s) 104, 326
Fsp4HI GCNGC 3 cut(s) 248, 267, 444
FspBI CTAG 2 cut(s) 191, 459
GluI GCNGC 3 cut(s) 248, 267, 444
HaeIII GGCC 2 cut(s) 49, 211
HgaI GACGC 1 cut(s) 383
Hin1II CATG 2 cut(s) 238, 389
HindIII AAGCTT 2 cut(s) 305, 420
HinfI GANTC 3 cut(s) 15, 199, 432
Hpy188I TCNGA 1 cut(s) 345
Hpy188III TCNNGA 2 cut(s) 97, 181
Hpy99I CGWCG 1 cut(s) 119
HpyAV CCTTC 3 cut(s) 114, 187, 343
HpyCH4III ACNGT 1 cut(s) 126
HpyCH4IV ACGT 1 cut(s) 285
HpyCH4V TGCA 3 cut(s) 80, 234, 358
HpySE526I ACGT 1 cut(s) 285
Hsp92II CATG 2 cut(s) 238, 389
Kzo9I GATC 1 cut(s) 403
LpnPI CCDG 5 cut(s) 36, 63, 166, 348, 368
Lsp1109I GCAGC 3 cut(s) 234, 278, 455
LweI GCATC 2 cut(s) 48, 89
MaeI CTAG 2 cut(s) 191, 459
MaeII ACGT 1 cut(s) 285
MalI GATC 1 cut(s) 405
MboI GATC 1 cut(s) 403
MboII GAAGA 1 cut(s) 358
MhlI GDGCHC 2 cut(s) 104, 326
MlsI TGGCCA 1 cut(s) 211
MluCI AATT 2 cut(s) 28, 252
MluNI TGGCCA 1 cut(s) 211
MlyI GAGTC 2 cut(s) 24, 441
MnlI CCTC 2 cut(s) 285, 456
Mox20I TGGCCA 1 cut(s) 211
Mph1103I ATGCAT 1 cut(s) 82
MscI TGGCCA 1 cut(s) 211
Msp20I TGGCCA 1 cut(s) 211
MspA1I CMGCKG 2 cut(s) 338, 446
MspR9I CCNGG 1 cut(s) 51
MvaI CCWGG 1 cut(s) 51
NdeII GATC 1 cut(s) 403
NlaIII CATG 2 cut(s) 238, 389
NsiI ATGCAT 1 cut(s) 82
NspI RCATGY 2 cut(s) 238, 389
NspV TTCGAA 2 cut(s) 168, 426
PcsI WCGNNNNNNNCGW 1 cut(s) 432
PfeI GAWTC 1 cut(s) 199
PkrI GCNGC 3 cut(s) 249, 268, 445
PleI GAGTC 2 cut(s) 23, 440
PpsI GAGTC 2 cut(s) 23, 440
PpuMI RGGWCCY 1 cut(s) 352
Psp124BI GAGCTC 1 cut(s) 326
Psp1406I AACGTT 1 cut(s) 285
Psp5II RGGWCCY 1 cut(s) 352
Psp6I CCWGG 1 cut(s) 49
PspGI CCWGG 1 cut(s) 49
PspPI GGNCC 2 cut(s) 47, 352
PspPPI RGGWCCY 1 cut(s) 352
PstI CTGCAG 1 cut(s) 360
PvuII CAGCTG 1 cut(s) 446
RsaI GTAC 1 cut(s) 189
RsaNI GTAC 1 cut(s) 188
SacI GAGCTC 1 cut(s) 326
SatI GCNGC 3 cut(s) 248, 267, 444
Sau3AI GATC 1 cut(s) 403
Sau96I GGNCC 2 cut(s) 47, 352
ScaI AGTACT 1 cut(s) 189
SchI GAGTC 2 cut(s) 24, 441
ScrFI CCNGG 1 cut(s) 51
SduI GDGCHC 2 cut(s) 104, 326
SfaNI GCATC 2 cut(s) 48, 89
SfcI CTRYAG 1 cut(s) 356
SfuI TTCGAA 2 cut(s) 168, 426
SinI GGWCC 1 cut(s) 352
Sse9I AATT 2 cut(s) 28, 252
SsiI CCGC 1 cut(s) 338
SspMI CTAG 2 cut(s) 191, 459
SstI GAGCTC 1 cut(s) 326
StyD4I CCNGG 1 cut(s) 49
TaaI ACNGT 1 cut(s) 126
TaiI ACGT 1 cut(s) 288
TaqI TCGA 6 cut(s) 96, 114, 168, 390, 402, 426
TasI AATT 2 cut(s) 28, 252
TatI WGTACW 1 cut(s) 187
TfiI GAWTC 1 cut(s) 199
TscAI CASTG 1 cut(s) 131
TseI GCWGC 3 cut(s) 247, 266, 443
TspDTI ATGAA 3 cut(s) 145, 233, 388
TspRI CASTG 1 cut(s) 131
VpaK11BI GGWCC 1 cut(s) 352
XapI RAATTY 1 cut(s) 28
XceI RCATGY 2 cut(s) 238, 389
XspI CTAG 2 cut(s) 191, 459
ZrmI AGTACT 1 cut(s) 189
Zsp2I ATGCAT 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.