Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0004732

Physical Location & Seq

Genomic Coordinates Reverse (-)

18104509 .. 18107364

Gene Structure 2856 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGAAAGCACTGGGACATCCTCAGCTGCCAGGCGGTGGAAATAGGAATTTGGGGTGTTTGGTGAATGGGAAAATGGATTTCTGGCCCGAGTTTCTTGCGAGCAGTTGGGGAAGAGAATTTGTGGCAGGAGGGGTTGGAGGGATGGCTGGTGTAGTTTCTGGTTATCCGCTCGACACTCTCCGGATCTTGCAACAGAATTCGCATTCGGCATCGGCCTTCAGCATCCTTCGCAATGTTGTCTCTGCTGAAGGCCCCGTTGCCCTTTACAGAGGCATGACTGCTCCCCTGGCAGCCGTTACCTTCCAGAATGCCATAGTTTTCCAGGTATACTCTATCCTCTCCCGAACCTGCGATCCTTGCGTTTCCGCCAAAGACCCTCCTTCATACAAAGGTGTTTATCTAGGGGGAATTGGCACAGGTGCTATACAGAGCCTAATACTCAGCCCTGTAGAACTCGTAAAAATCCGGCTTCAACTCCAAACCGATGCAAAATCGAAACCTCATCAGCTGCAATCCCCCAAAGGCCCTATAGATGTTGCCAAAAGCATTATGAGAGCAGAAGGCTTAAGGGGAATATATAGAGGACTTTCTATTACTGTCCTGAGGGATGCACCTTCGTTCGGTTTCTACTTCTGGACTTATGAGTACATGAGAGAGAAGCTTCACCCGGGCTGCAGAAGGACCGGCGAAGAGAGCTTGCAAACAATGCTGGTGGCAGGAGGGCTTGCGGGAGTAGCCAGCTGGATTTGTTGTTATCCCCTAGACGTTGTGAAAACAAGATTGCAGGCTCAGGTTCTGTCTCAGTACCCGCCCAGATATTCCGGCATTGTTGATTGCTTTCAGAAGAGTGTTAGAGAGGATGGTTATGGCGTGCTCTGGCGTGGACTAGGAACTGCGATTTCTAGAGCCTTTCTGGTGAATGGGGCAGTTTTTGCTGCTTATGAGATTGCTCTGAGGTGCCTATACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000064 GO:0003333 GO:0003674 GO:0005215 GO:0005287 GO:0005289 GO:0005290 GO:0005292 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006082 GO:0006520 GO:0006560 GO:0006561 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006844 GO:0006855 GO:0006865 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0008324 GO:0008509 GO:0008514 GO:0008519 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009628 GO:0009987 GO:0015075 GO:0015101 GO:0015171 GO:0015174 GO:0015179 GO:0015181 GO:0015189 GO:0015227 GO:0015238 GO:0015318 GO:0015651 GO:0015695 GO:0015696 GO:0015697 GO:0015711 GO:0015802 GO:0015807 GO:0015809 GO:0015822 GO:0015849 GO:0015893 GO:0016020 GO:0016021 GO:0016053 GO:0018130 GO:0019752 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045117 GO:0046394 GO:0046483 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051181 GO:0051234 GO:0055085 GO:0071702 GO:0071704 GO:0071705 GO:0072488 GO:0089709 GO:0098655 GO:0098656 GO:1901360 GO:1901362 GO:1901474 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902022 GO:1902023 GO:1902475 GO:1902616 GO:1903352 GO:1903400 GO:1903401 GO:1903825 GO:1903826 GO:1905039 GO:1990542 GO:1990575 GO:1990822

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

323

Amino Acids

34.93

Weight (kDa)

9.31

Isoelectric Point (pI)

37.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	35 - 115	9.9e-14	Mitochondrial carrier protein
Mito_carr	PF00153	133 - 221	1.8e-21	Mitochondrial carrier protein
Mito_carr	PF00153	232 - 319	3.8e-23	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004732)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79900
fragaria_vesca	FvH4_6g31430 FvH4_6g31440 FvH4_6g31440
malus_domestica	MD09G1211700.v1.1 MD17G1194000.v1.1
prunus_persica	Prupe.3G069700_v2.0.a1
pyrus_communis	pycom09g12890 pycom17g19990
rosa_chinensis	RchiOBHm_Chr2g0138231 RchiOBHm_Chr2g0138241
rosa_laevigata	RLG00000019727 RLG00000019728
rosa_multiflora	Rmu_sc0004576.1_g000030 Rmu_sc0004576.1_g000031 Rmu_sc0006570.1_g000009
rosa_roxburghii	Rroxscaffold_2G00106390 Rroxscaffold_2G00106400
rosa_rugosa	Rorug02G0350000 Rorug02G0350100 Rorug02G0350200
rosa_samantha	Rh2AG396600 Rh2AG396700 Rh2BG409600 Rh2BG409800 Rh2CG383100 Rh2CG383200 Rh2DG418300 Rh2DG418500
rosa_wichuraiana	Rw2G032430 Rw2G032440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	356
AccB1I	GGYRCC	1 cut(s)	957
AccB7I	CCANNNNNTGG	1 cut(s)	35
AccBSI	CCGCTC	1 cut(s)	169
AccI	GTMKAC	1 cut(s)	327
AccIII	TCCGGA	1 cut(s)	180
AciI	CCGC	5 cut(s)	33, 167, 366, 728, 809
AclWI	GGATC	2 cut(s)	191, 347
AcsI	RAATTY	3 cut(s)	46, 116, 196
AcuI	CTGAAG	2 cut(s)	202, 267
AfaI	GTAC	2 cut(s)	647, 806
AfiI	CCNNNNNNNGG	2 cut(s)	35, 620
AflII	CTTAAG	1 cut(s)	565
AgsI	TTSAA	1 cut(s)	473
AjnI	CCWGG	3 cut(s)	28, 285, 321
AloI	GAACNNNNNNTCC	2 cut(s)	337, 369
AluBI	AGCT	5 cut(s)	25, 508, 661, 696, 741
AluI	AGCT	5 cut(s)	25, 508, 661, 696, 741
Alw21I	GWGCWC	1 cut(s)	876
Alw26I	GTCTC	2 cut(s)	244, 804
AlwI	GGATC	2 cut(s)	191, 347
AlwNI	CAGNNNCTG	1 cut(s)	796
Ama87I	CYCGRG	2 cut(s)	86, 667
Aor13HI	TCCGGA	1 cut(s)	180
AoxI	GGCC	4 cut(s)	83, 213, 250, 523
ApeKI	GCWGC	5 cut(s)	25, 290, 508, 672, 935
ApoI	RAATTY	3 cut(s)	46, 116, 196
AspS9I	GGNCC	4 cut(s)	84, 251, 524, 681
AsuC2I	CCSGG	2 cut(s)	668, 669
AsuHPI	GGTGA	3 cut(s)	73, 656, 928
AvaI	CYCGRG	2 cut(s)	86, 667
AvaII	GGWCC	1 cut(s)	681
AxyI	CCTNAGG	1 cut(s)	602
BanI	GGYRCC	1 cut(s)	957
Bbv12I	GWGCWC	1 cut(s)	876
BbvCI	CCTCAGC	1 cut(s)	21
BbvI	GCAGC	5 cut(s)	12, 302, 495, 659, 922
BccI	CCATC	2 cut(s)	136, 854
BceAI	ACGGC	1 cut(s)	278
BcgI	CGANNNNNNTGC	2 cut(s)	77, 111
BciT130I	CCWGG	3 cut(s)	30, 287, 323
BcnI	CCSGG	2 cut(s)	668, 669
BcoDI	GTCTC	2 cut(s)	244, 804
BfaI	CTAG	5 cut(s)	401, 761, 887, 903, 967
BfmI	CTRYAG	3 cut(s)	447, 528, 673
BfrI	CTTAAG	1 cut(s)	565
BfuAI	ACCTGC	1 cut(s)	356
BisI	GCNGC	5 cut(s)	26, 291, 509, 673, 936
BlsI	GCNGC	5 cut(s)	27, 292, 510, 674, 937
Bme1390I	CCNGG	5 cut(s)	30, 287, 323, 668, 669
Bme18I	GGWCC	1 cut(s)	681
BmeT110I	CYCGRG	2 cut(s)	86, 667
BmgT120I	GGNCC	4 cut(s)	84, 251, 524, 681
BmiI	GGNNCC	2 cut(s)	253, 959
BmrFI	CCNGG	5 cut(s)	30, 287, 323, 668, 669
BmrI	ACTGGG	1 cut(s)	20
BmsI	GCATC	4 cut(s)	218, 231, 475, 598
BmuI	ACTGGG	1 cut(s)	20
Bpu10I	CCTNAGC	2 cut(s)	21, 789
BpuMI	CCSGG	2 cut(s)	668, 669
BsaJI	CCNNGG	2 cut(s)	285, 667
BsaWI	WCCGGW	1 cut(s)	180
Bsc4I	CCNNNNNNNGG	2 cut(s)	35, 620
Bse118I	RCCGGY	1 cut(s)	683
Bse1I	ACTGG	1 cut(s)	15
Bse21I	CCTNAGG	1 cut(s)	602
Bse3DI	GCAATG	1 cut(s)	238
BseAI	TCCGGA	1 cut(s)	180
BseBI	CCWGG	3 cut(s)	30, 287, 323
BseDI	CCNNGG	2 cut(s)	285, 667
BseGI	GGATG	5 cut(s)	16, 147, 222, 613, 865
BseLI	CCNNNNNNNGG	2 cut(s)	35, 620
BseMI	GCAATG	1 cut(s)	238
BseMII	CTCAG	6 cut(s)	35, 454, 593, 803, 815, 944
BseNI	ACTGG	1 cut(s)	15
BseXI	GCAGC	5 cut(s)	12, 302, 495, 659, 922
BshFI	GGCC	4 cut(s)	85, 215, 252, 525
BshNI	GGYRCC	1 cut(s)	957
BsiHKAI	GWGCWC	1 cut(s)	876
BsiHKCI	CYCGRG	2 cut(s)	86, 667
BsiSI	CCGG	5 cut(s)	181, 466, 668, 684, 822
BslFI	GGGAC	1 cut(s)	27
BslI	CCNNNNNNNGG	2 cut(s)	35, 620
BsmAI	GTCTC	2 cut(s)	244, 804
BsmFI	GGGAC	1 cut(s)	27
BsmI	GAATGC	2 cut(s)	202, 313
BsnI	GGCC	4 cut(s)	85, 215, 252, 525
BsoBI	CYCGRG	2 cut(s)	86, 667
Bsp1286I	GDGCHC	1 cut(s)	876
Bsp13I	TCCGGA	1 cut(s)	180
Bsp143I	GATC	2 cut(s)	183, 352
BspACI	CCGC	5 cut(s)	33, 167, 366, 728, 809
BspANI	GGCC	4 cut(s)	85, 215, 252, 525
BspCNI	CTCAG	6 cut(s)	34, 453, 594, 802, 814, 945
BspEI	TCCGGA	1 cut(s)	180
BspLI	GGNNCC	2 cut(s)	253, 959
BspMAI	CTGCAG	1 cut(s)	677
BspMI	ACCTGC	1 cut(s)	356
BspPI	GGATC	2 cut(s)	191, 347
BspT107I	GGYRCC	1 cut(s)	957
BspTI	CTTAAG	1 cut(s)	565
BsrBI	CCGCTC	1 cut(s)	169
BsrDI	GCAATG	1 cut(s)	238
BsrFI	RCCGGY	1 cut(s)	683
BsrI	ACTGG	1 cut(s)	15
BssAI	RCCGGY	1 cut(s)	683
BssECI	CCNNGG	2 cut(s)	285, 667
BssMI	GATC	2 cut(s)	183, 352
BssNAI	GTATAC	1 cut(s)	328
Bst1107I	GTATAC	1 cut(s)	328
Bst2UI	CCWGG	3 cut(s)	30, 287, 323
Bst4CI	ACNGT	1 cut(s)	598
Bst6I	CTCTTC	3 cut(s)	106, 684, 839
BstAFI	CTTAAG	1 cut(s)	565
BstAPI	GCANNNNNTGC	2 cut(s)	706, 932
BstC8I	GCNNGC	6 cut(s)	100, 698, 726, 739, 786, 872
BstDEI	CTNAG	6 cut(s)	21, 440, 602, 789, 801, 953
BstF5I	GGATG	5 cut(s)	16, 147, 222, 613, 865
BstKTI	GATC	2 cut(s)	186, 355
BstMAI	GTCTC	2 cut(s)	244, 804
BstMBI	GATC	2 cut(s)	183, 352
BstMWI	GCNNNNNNNGC	7 cut(s)	228, 287, 357, 693, 706, 734, 932
BstNI	CCWGG	3 cut(s)	30, 287, 323
BstSCI	CCNGG	5 cut(s)	28, 285, 321, 666, 667
BstSFI	CTRYAG	3 cut(s)	447, 528, 673
BstV1I	GCAGC	5 cut(s)	12, 302, 495, 659, 922
BstX2I	RGATCY	1 cut(s)	183
BstYI	RGATCY	1 cut(s)	183
BstZ17I	GTATAC	1 cut(s)	328
Bsu36I	CCTNAGG	1 cut(s)	602
BsuRI	GGCC	4 cut(s)	85, 215, 252, 525
BtsCI	GGATG	5 cut(s)	16, 147, 222, 613, 865
BtsIMutI	CAGTG	1 cut(s)	8
BveI	ACCTGC	1 cut(s)	356
Cac8I	GCNNGC	6 cut(s)	100, 698, 726, 739, 786, 872
CaiI	CAGNNNCTG	1 cut(s)	796
Cfr10I	RCCGGY	1 cut(s)	683
Cfr13I	GGNCC	4 cut(s)	84, 251, 524, 681
Cfr9I	CCCGGG	1 cut(s)	667
Csp6I	GTAC	2 cut(s)	646, 805
CspCI	CAANNNNNGTGG	2 cut(s)	693, 728
CviAII	CATG	2 cut(s)	274, 649
CviQI	GTAC	2 cut(s)	646, 805
DdeI	CTNAG	6 cut(s)	21, 440, 602, 789, 801, 953
DpnI	GATC	2 cut(s)	185, 354
DpnII	GATC	2 cut(s)	183, 352
Eam1104I	CTCTTC	3 cut(s)	106, 684, 839
EarI	CTCTTC	3 cut(s)	106, 684, 839
EciI	GGCGGA	1 cut(s)	355
Eco47I	GGWCC	1 cut(s)	681
Eco57I	CTGAAG	2 cut(s)	202, 267
Eco81I	CCTNAGG	1 cut(s)	602
Eco88I	CYCGRG	2 cut(s)	86, 667
EcoO109I	RGGNCCY	2 cut(s)	251, 524
EcoRI	GAATTC	1 cut(s)	196
EcoRII	CCWGG	3 cut(s)	28, 285, 321
FaeI	CATG	2 cut(s)	277, 652
FaqI	GGGAC	1 cut(s)	27
FatI	CATG	2 cut(s)	273, 648
FauI	CCCGC	2 cut(s)	721, 816
FblI	GTMKAC	1 cut(s)	327
Fnu4HI	GCNGC	5 cut(s)	26, 291, 509, 673, 936
FokI	GGATG	5 cut(s)	3, 154, 209, 620, 872
Fsp4HI	GCNGC	5 cut(s)	26, 291, 509, 673, 936
FspBI	CTAG	5 cut(s)	401, 761, 887, 903, 967
GluI	GCNGC	5 cut(s)	26, 291, 509, 673, 936
HaeIII	GGCC	4 cut(s)	85, 215, 252, 525
HapII	CCGG	5 cut(s)	181, 466, 668, 684, 822
Hin1II	CATG	2 cut(s)	277, 652
HindIII	AAGCTT	1 cut(s)	659
HpaII	CCGG	5 cut(s)	181, 466, 668, 684, 822
HphI	GGTGA	3 cut(s)	73, 656, 928
Hpy166II	GTNNAC	2 cut(s)	328, 884
Hpy188I	TCNGA	2 cut(s)	843, 954
Hpy188III	TCNNGA	6 cut(s)	181, 304, 342, 601, 634, 903
Hpy8I	GTNNAC	2 cut(s)	328, 884
HpyAV	CCTTC	8 cut(s)	226, 236, 242, 310, 390, 554, 624, 672
HpyCH4III	ACNGT	1 cut(s)	598
HpyCH4IV	ACGT	1 cut(s)	765
HpyCH4V	TGCA	7 cut(s)	190, 488, 511, 611, 675, 700, 784
HpyF10VI	GCNNNNNNNGC	7 cut(s)	228, 287, 357, 693, 706, 734, 932
HpyF3I	CTNAG	6 cut(s)	21, 440, 602, 789, 801, 953
HpySE526I	ACGT	1 cut(s)	765
Hsp92II	CATG	2 cut(s)	277, 652
Kpn2I	TCCGGA	1 cut(s)	180
Kzo9I	GATC	2 cut(s)	183, 352
LmnI	GCTCC	1 cut(s)	286
Lsp1109I	GCAGC	5 cut(s)	12, 302, 495, 659, 922
LweI	GCATC	4 cut(s)	218, 231, 475, 598
MaeI	CTAG	5 cut(s)	401, 761, 887, 903, 967
MaeII	ACGT	1 cut(s)	765
MaeIII	GTNAC	1 cut(s)	295
MalI	GATC	2 cut(s)	185, 354
MbiI	CCGCTC	1 cut(s)	169
MboI	GATC	2 cut(s)	183, 352
MboII	GAAGA	3 cut(s)	123, 701, 856
MflI	RGATCY	1 cut(s)	183
MhlI	GDGCHC	1 cut(s)	876
MluCI	AATT	4 cut(s)	46, 116, 196, 408
MmeI	TCCRAC	1 cut(s)	115
MroI	TCCGGA	1 cut(s)	180
MseI	TTAA	1 cut(s)	566
MspA1I	CMGCKG	3 cut(s)	25, 508, 741
MspCI	CTTAAG	1 cut(s)	565
MspI	CCGG	5 cut(s)	181, 466, 668, 684, 822
MspR9I	CCNGG	5 cut(s)	30, 287, 323, 668, 669
Mva1269I	GAATGC	2 cut(s)	202, 313
MvaI	CCWGG	3 cut(s)	30, 287, 323
MwoI	GCNNNNNNNGC	7 cut(s)	228, 287, 357, 693, 706, 734, 932
NciI	CCSGG	2 cut(s)	668, 669
NdeII	GATC	2 cut(s)	183, 352
NlaIII	CATG	2 cut(s)	277, 652
NlaIV	GGNNCC	2 cut(s)	253, 959
PctI	GAATGC	2 cut(s)	202, 313
PflMI	CCANNNNNTGG	1 cut(s)	35
PkrI	GCNGC	5 cut(s)	27, 292, 510, 674, 937
Psp6I	CCWGG	3 cut(s)	28, 285, 321
PspGI	CCWGG	3 cut(s)	28, 285, 321
PspN4I	GGNNCC	2 cut(s)	253, 959
PspPI	GGNCC	4 cut(s)	84, 251, 524, 681
PstI	CTGCAG	1 cut(s)	677
PstNI	CAGNNNCTG	1 cut(s)	796
PsuI	RGATCY	1 cut(s)	183
PvuII	CAGCTG	3 cut(s)	25, 508, 741
RsaI	GTAC	2 cut(s)	647, 806
RsaNI	GTAC	2 cut(s)	646, 805
SaqAI	TTAA	1 cut(s)	566
SatI	GCNGC	5 cut(s)	26, 291, 509, 673, 936
Sau3AI	GATC	2 cut(s)	183, 352
Sau96I	GGNCC	4 cut(s)	84, 251, 524, 681
ScrFI	CCNGG	5 cut(s)	30, 287, 323, 668, 669
SduI	GDGCHC	1 cut(s)	876
SfaNI	GCATC	4 cut(s)	218, 231, 475, 598
SfcI	CTRYAG	3 cut(s)	447, 528, 673
SinI	GGWCC	1 cut(s)	681
SmaI	CCCGGG	1 cut(s)	669
SmlI	CTYRAG	1 cut(s)	565
SmoI	CTYRAG	1 cut(s)	565
Sse9I	AATT	4 cut(s)	46, 116, 196, 408
SsiI	CCGC	5 cut(s)	33, 167, 366, 728, 809
SspMI	CTAG	5 cut(s)	401, 761, 887, 903, 967
StyD4I	CCNGG	5 cut(s)	28, 285, 321, 666, 667
TaaI	ACNGT	1 cut(s)	598
TaiI	ACGT	1 cut(s)	768
TaqI	TCGA	2 cut(s)	171, 494
TasI	AATT	4 cut(s)	46, 116, 196, 408
TatI	WGTACW	1 cut(s)	645
Tru1I	TTAA	1 cut(s)	566
Tru9I	TTAA	1 cut(s)	566
TscAI	CASTG	1 cut(s)	15
TseI	GCWGC	5 cut(s)	25, 290, 508, 672, 935
TspDTI	ATGAA	2 cut(s)	17, 372
TspMI	CCCGGG	1 cut(s)	667
TspRI	CASTG	1 cut(s)	15
Van91I	CCANNNNNTGG	1 cut(s)	35
Vha464I	CTTAAG	1 cut(s)	565
VpaK11BI	GGWCC	1 cut(s)	681
XapI	RAATTY	3 cut(s)	46, 116, 196
XbaI	TCTAGA	1 cut(s)	902
XmaI	CCCGGG	1 cut(s)	667
XmiI	GTMKAC	1 cut(s)	327
XspI	CTAG	5 cut(s)	401, 761, 887, 903, 967

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.