pycom17g23000

Transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0006493
Physical Location & Seq
Reverse (-)
21384811 .. 21385923
1113 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 717 bp
ATGCTTGTGTTATCACTAGACAAGAATTTAAATCTCACAATGTCCTTGCTGGCTCTGATGGCGGGGAGTGCTGGAGTAGCAATTGCCGATGTAACAATTGATGCCTGTGTTACACAGAACAGTATAAGACATCCATCCCTTGCTGGTGACATGCAAAGCTTGTGTGGACTGAGCTCTTCAGTTGGGGCACTGGTCGGATTTTCACTTAGTGGGTTTCTTGTTCACCTTGTGGGCCCTAAGGGTGTGTTTGGGTTGCTCAGCATCCCTCCAGGGCTGGTCGTTTTGGTTGGGATAATGCATAGAGAATCTCATGTGCACAACTTTGCTTATAAACAGGTCAGTGTAAAGTTACTGGATGCTGGTCAGGCTATGTGGACAACATTAAAATGCGGTAGCGTATGGAGGCCTTGTTTATATATGTACTTGTCACTTGCTTTGGCCTTGAATGTTCGTGAAGGAATGTTTTATTGGTACACTGATGCAAAGGAGGGTCCATCTTTCTCTAAGGAGATTGTTGGATCCATATTCTCTATAGGTGCTGTTGGCTCCCTTTTGGGGGTCCTTCTCTACCAGAACTTTTTCAAAAAATTACCCTTTCAGGGATGTTCTTTTCTGGACTCAGTTGCTCTATGGTGTTTCAGGATTGCTAGATTTGGTATTGGTGTTGCGCATAAATTTGAAATTTGGTTTGCCAGATTATTTTTTTGTTGTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BT1

Protein Analysis

239

Amino Acids

25.88

Weight (kDa)

8.8

Isoelectric Point (pI)

26.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BT1 PF03092 6 - 202 2.6e-41 BT1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 330
Acc16I TGCGCA 1 cut(s) 669
AciI CCGC 2 cut(s) 62, 390
AclWI GGATC 2 cut(s) 513, 526
AcsI RAATTY 3 cut(s) 25, 674, 681
AcuI CTGAAG 1 cut(s) 162
AdeI CACNNNGTG 2 cut(s) 209, 229
AfaI GTAC 2 cut(s) 422, 473
AfiI CCNNNNNNNGG 3 cut(s) 555, 556, 599
AgsI TTSAA 3 cut(s) 445, 583, 680
AjnI CCWGG 1 cut(s) 268
AjuI GAANNNNNNNTTGG 2 cut(s) 451, 483
AluBI AGCT 2 cut(s) 159, 174
AluI AGCT 2 cut(s) 159, 174
Alw21I GWGCWC 2 cut(s) 176, 318
Alw44I GTGCAC 1 cut(s) 314
AlwI GGATC 2 cut(s) 513, 526
AoxI GGCC 3 cut(s) 232, 404, 438
ApaI GGGCCC 1 cut(s) 236
ApaLI GTGCAC 1 cut(s) 314
ApoI RAATTY 3 cut(s) 25, 674, 681
Asp700I GAANNNNTTC 1 cut(s) 578
AspLEI GCGC 1 cut(s) 670
AspS9I GGNCC 4 cut(s) 232, 233, 491, 559
AsuHPI GGTGA 2 cut(s) 158, 215
AvaII GGWCC 2 cut(s) 491, 559
AxyI CCTNAGG 1 cut(s) 237
BaeGI GKGCMC 3 cut(s) 190, 236, 318
BamHI GGATCC 1 cut(s) 518
BanII GRGCYC 2 cut(s) 176, 236
Bbv12I GWGCWC 2 cut(s) 176, 318
BccI CCATC 3 cut(s) 52, 142, 502
BciT130I CCWGG 1 cut(s) 270
BfaI CTAG 2 cut(s) 17, 648
BfmI CTRYAG 1 cut(s) 531
BlpI GCTNAGC 1 cut(s) 257
Bme1390I CCNGG 1 cut(s) 270
Bme18I GGWCC 2 cut(s) 491, 559
BmgT120I GGNCC 4 cut(s) 232, 233, 491, 559
BmiI GGNNCC 5 cut(s) 234, 492, 520, 547, 560
BmrFI CCNGG 1 cut(s) 270
BmsI GCATC 4 cut(s) 91, 270, 346, 469
BpmI CTGGAG 2 cut(s) 93, 252
Bpu1102I GCTNAGC 1 cut(s) 257
BsaJI CCNNGG 1 cut(s) 269
BsaXI ACNNNNNCTCC 2 cut(s) 394, 424
Bsc4I CCNNNNNNNGG 3 cut(s) 555, 556, 599
Bse1I ACTGG 2 cut(s) 195, 357
Bse21I CCTNAGG 1 cut(s) 237
BseBI CCWGG 1 cut(s) 270
BseDI CCNNGG 1 cut(s) 269
BseGI GGATG 5 cut(s) 130, 134, 261, 361, 608
BseLI CCNNNNNNNGG 3 cut(s) 555, 556, 599
BseMII CTCAG 3 cut(s) 161, 271, 633
BseNI ACTGG 2 cut(s) 195, 357
BseSI GKGCMC 3 cut(s) 190, 236, 318
BshFI GGCC 3 cut(s) 234, 406, 440
BsiHKAI GWGCWC 2 cut(s) 176, 318
BslI CCNNNNNNNGG 3 cut(s) 555, 556, 599
BsnI GGCC 3 cut(s) 234, 406, 440
Bsp120I GGGCCC 1 cut(s) 232
Bsp1286I GDGCHC 4 cut(s) 176, 190, 236, 318
Bsp143I GATC 1 cut(s) 518
Bsp1720I GCTNAGC 1 cut(s) 257
BspACI CCGC 2 cut(s) 62, 390
BspANI GGCC 3 cut(s) 234, 406, 440
BspCNI CTCAG 3 cut(s) 162, 270, 632
BspLI GGNNCC 5 cut(s) 234, 492, 520, 547, 560
BspPI GGATC 2 cut(s) 513, 526
BspQI GCTCTTC 1 cut(s) 181
BsrI ACTGG 2 cut(s) 195, 357
BssECI CCNNGG 1 cut(s) 269
BssMI GATC 1 cut(s) 518
Bst2UI CCWGG 1 cut(s) 270
Bst4CI ACNGT 1 cut(s) 122
Bst6I CTCTTC 1 cut(s) 181
BstC8I GCNNGC 1 cut(s) 51
BstDEI CTNAG 6 cut(s) 170, 206, 237, 257, 504, 619
BstF5I GGATG 5 cut(s) 130, 134, 261, 361, 608
BstHHI GCGC 1 cut(s) 670
BstKTI GATC 1 cut(s) 521
BstMBI GATC 1 cut(s) 518
BstMWI GCNNNNNNNGC 4 cut(s) 59, 68, 77, 365
BstNI CCWGG 1 cut(s) 270
BstNSI RCATGY 1 cut(s) 154
BstSCI CCNGG 1 cut(s) 268
BstSFI CTRYAG 1 cut(s) 531
BstSLI GKGCMC 3 cut(s) 190, 236, 318
BstX2I RGATCY 1 cut(s) 518
BstYI RGATCY 1 cut(s) 518
Bsu36I CCTNAGG 1 cut(s) 237
BsuRI GGCC 3 cut(s) 234, 406, 440
BtsCI GGATG 5 cut(s) 130, 134, 261, 361, 608
BtsIMutI CAGTG 3 cut(s) 188, 346, 474
Cac8I GCNNGC 1 cut(s) 51
CfoI GCGC 1 cut(s) 670
Cfr13I GGNCC 4 cut(s) 232, 233, 491, 559
Csp6I GTAC 2 cut(s) 421, 472
CviAII CATG 2 cut(s) 151, 311
CviJI RGCY 9 cut(s) 53, 159, 174, 234, 274, 368, 406, 440, 546
CviKI_1 RGCY 9 cut(s) 53, 159, 174, 234, 274, 368, 406, 440, 546
CviQI GTAC 2 cut(s) 421, 472
DdeI CTNAG 6 cut(s) 170, 206, 237, 257, 504, 619
DpnI GATC 1 cut(s) 520
DpnII GATC 1 cut(s) 518
DraI TTTAAA 1 cut(s) 30
DraIII CACNNNGTG 2 cut(s) 209, 229
Eam1104I CTCTTC 1 cut(s) 181
EarI CTCTTC 1 cut(s) 181
Ecl136II GAGCTC 1 cut(s) 174
Eco147I AGGCCT 1 cut(s) 406
Eco24I GRGCYC 2 cut(s) 176, 236
Eco47I GGWCC 2 cut(s) 491, 559
Eco53kI GAGCTC 1 cut(s) 174
Eco57I CTGAAG 1 cut(s) 162
Eco81I CCTNAGG 1 cut(s) 237
EcoICRI GAGCTC 1 cut(s) 174
EcoO109I RGGNCCY 2 cut(s) 233, 559
EcoRII CCWGG 1 cut(s) 268
EcoT22I ATGCAT 1 cut(s) 300
EcoT38I GRGCYC 2 cut(s) 176, 236
FaeI CATG 2 cut(s) 154, 314
FatI CATG 2 cut(s) 150, 310
FauI CCCGC 1 cut(s) 55
FokI GGATG 5 cut(s) 117, 121, 248, 368, 615
FriOI GRGCYC 2 cut(s) 176, 236
FspBI CTAG 2 cut(s) 17, 648
FspI TGCGCA 1 cut(s) 669
GlaI GCGC 1 cut(s) 669
GsuI CTGGAG 2 cut(s) 93, 252
HaeIII GGCC 3 cut(s) 234, 406, 440
HhaI GCGC 1 cut(s) 670
Hin1II CATG 2 cut(s) 154, 314
Hin6I GCGC 1 cut(s) 668
HinP1I GCGC 1 cut(s) 668
HindIII AAGCTT 1 cut(s) 157
HinfI GANTC 2 cut(s) 305, 617
HphI GGTGA 2 cut(s) 158, 215
Hpy166II GTNNAC 5 cut(s) 167, 223, 316, 375, 474
Hpy188I TCNGA 2 cut(s) 57, 197
Hpy188III TCNNGA 3 cut(s) 452, 614, 640
Hpy8I GTNNAC 5 cut(s) 167, 223, 316, 375, 474
HpyAV CCTTC 2 cut(s) 449, 572
HpyCH4III ACNGT 1 cut(s) 122
HpyCH4V TGCA 4 cut(s) 154, 298, 316, 482
HpyF10VI GCNNNNNNNGC 4 cut(s) 59, 68, 77, 365
HpyF3I CTNAG 6 cut(s) 170, 206, 237, 257, 504, 619
Hsp92II CATG 2 cut(s) 154, 314
HspAI GCGC 1 cut(s) 668
Kzo9I GATC 1 cut(s) 518
LguI GCTCTTC 1 cut(s) 181
LmnI GCTCC 1 cut(s) 551
LweI GCATC 4 cut(s) 91, 270, 346, 469
MaeI CTAG 2 cut(s) 17, 648
MaeIII GTNAC 5 cut(s) 91, 109, 146, 348, 426
MalI GATC 1 cut(s) 520
MboI GATC 1 cut(s) 518
MboII GAAGA 1 cut(s) 168
MfeI CAATTG 2 cut(s) 81, 96
MflI RGATCY 1 cut(s) 518
MhlI GDGCHC 4 cut(s) 176, 190, 236, 318
MluCI AATT 6 cut(s) 25, 81, 96, 587, 674, 681
MlyI GAGTC 1 cut(s) 611
MmeI TCCRAC 2 cut(s) 175, 496
MnlI CCTC 3 cut(s) 276, 396, 481
Mph1103I ATGCAT 1 cut(s) 300
MroXI GAANNNNTTC 1 cut(s) 578
MseI TTAA 2 cut(s) 29, 383
MslI CAYNNNNRTG 1 cut(s) 385
MspR9I CCNGG 1 cut(s) 270
MunI CAATTG 2 cut(s) 81, 96
MvaI CCWGG 1 cut(s) 270
MwoI GCNNNNNNNGC 4 cut(s) 59, 68, 77, 365
NdeII GATC 1 cut(s) 518
NlaIII CATG 2 cut(s) 154, 314
NlaIV GGNNCC 5 cut(s) 234, 492, 520, 547, 560
NmuCI GTSAC 2 cut(s) 146, 426
NsbI TGCGCA 1 cut(s) 669
NsiI ATGCAT 1 cut(s) 300
NspI RCATGY 1 cut(s) 154
PceI AGGCCT 1 cut(s) 406
PciSI GCTCTTC 1 cut(s) 181
PdmI GAANNNNTTC 1 cut(s) 578
PfeI GAWTC 1 cut(s) 305
PleI GAGTC 1 cut(s) 611
PpsI GAGTC 1 cut(s) 611
PpuMI RGGWCCY 1 cut(s) 559
PsiI TTATAA 1 cut(s) 330
Psp124BI GAGCTC 1 cut(s) 176
Psp5II RGGWCCY 1 cut(s) 559
Psp6I CCWGG 1 cut(s) 268
PspGI CCWGG 1 cut(s) 268
PspN4I GGNNCC 5 cut(s) 234, 492, 520, 547, 560
PspOMI GGGCCC 1 cut(s) 232
PspPI GGNCC 4 cut(s) 232, 233, 491, 559
PspPPI RGGWCCY 1 cut(s) 559
PsuI RGATCY 1 cut(s) 518
RsaI GTAC 2 cut(s) 422, 473
RsaNI GTAC 2 cut(s) 421, 472
RseI CAYNNNNRTG 1 cut(s) 385
SacI GAGCTC 1 cut(s) 176
SapI GCTCTTC 1 cut(s) 181
SaqAI TTAA 2 cut(s) 29, 383
Sau3AI GATC 1 cut(s) 518
Sau96I GGNCC 4 cut(s) 232, 233, 491, 559
SchI GAGTC 1 cut(s) 611
ScrFI CCNGG 1 cut(s) 270
SduI GDGCHC 4 cut(s) 176, 190, 236, 318
SetI ASST 5 cut(s) 161, 176, 228, 339, 538
SfaNI GCATC 4 cut(s) 91, 270, 346, 469
SfcI CTRYAG 1 cut(s) 531
SinI GGWCC 2 cut(s) 491, 559
SmiI ATTTAAAT 1 cut(s) 30
SmiMI CAYNNNNRTG 1 cut(s) 385
Sse9I AATT 6 cut(s) 25, 81, 96, 587, 674, 681
SseBI AGGCCT 1 cut(s) 406
SsiI CCGC 2 cut(s) 62, 390
SspMI CTAG 2 cut(s) 17, 648
SstI GAGCTC 1 cut(s) 176
StuI AGGCCT 1 cut(s) 406
StyD4I CCNGG 1 cut(s) 268
SwaI ATTTAAAT 1 cut(s) 30
TaaI ACNGT 1 cut(s) 122
TasI AATT 6 cut(s) 25, 81, 96, 587, 674, 681
TatI WGTACW 1 cut(s) 420
TfiI GAWTC 1 cut(s) 305
Tru1I TTAA 2 cut(s) 29, 383
Tru9I TTAA 2 cut(s) 29, 383
TscAI CASTG 3 cut(s) 195, 346, 481
TseFI GTSAC 2 cut(s) 146, 426
Tsp45I GTSAC 2 cut(s) 146, 426
TspRI CASTG 3 cut(s) 195, 346, 481
VneI GTGCAC 1 cut(s) 314
VpaK11BI GGWCC 2 cut(s) 491, 559
XapI RAATTY 3 cut(s) 25, 674, 681
XceI RCATGY 1 cut(s) 154
XmnI GAANNNNTTC 1 cut(s) 578
XspI CTAG 2 cut(s) 17, 648
Zsp2I ATGCAT 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.