pycom17g23290

Heat Stress Transcription Factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0005627
Physical Location & Seq
Forward (+)
21664712 .. 21666475
1764 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 246 bp
ATGGAGGGGTCTCAGGGTGGTTCTGGTGGCGCACCGGCGCCTTTTCTGACCAAAACATACGACTTGGTGGATGATCCTTCTTCCAACCACATGGTGTCCTGGAGTGAGAGTGGTTCTAGTTTCGTAGTTTGGGATCCCACCGAGTTCGCCAAGGAAATGCTTCCCATGTATTTCAAGCACAACAATTTTTCGAGTTTCGTGAGGCAGCTTAATACATATGGGTTTAGAAAGATTGATCGATCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04212 ko05134 map04212 map05134
Pfam Domains
Protein Families
HSF_DNA-bind

Protein Analysis

82

Amino Acids

9.1

Weight (kDa)

5.49

Isoelectric Point (pI)

48.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSF_DNA-bind PF00447 15 - 79 1.5e-26 HSF-type DNA-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 37
AclWI GGATC 4 cut(s) 68, 128, 141, 234
AcyI GRCGYC 1 cut(s) 38
AdeI CACNNNGTG 1 cut(s) 94
AgsI TTSAA 1 cut(s) 175
AjnI CCWGG 1 cut(s) 98
AluBI AGCT 1 cut(s) 208
AluI AGCT 1 cut(s) 208
Alw26I GTCTC 1 cut(s) 15
AlwI GGATC 4 cut(s) 68, 128, 141, 234
ApeKI GCWGC 1 cut(s) 205
Asp700I GAANNNNTTC 1 cut(s) 159
AspLEI GCGC 2 cut(s) 32, 40
BamHI GGATCC 1 cut(s) 133
BanI GGYRCC 1 cut(s) 37
BbvI GCAGC 1 cut(s) 217
BciT130I CCWGG 1 cut(s) 100
BcoDI GTCTC 1 cut(s) 15
BfaI CTAG 1 cut(s) 117
BfoI RGCGCY 1 cut(s) 41
BisI GCNGC 1 cut(s) 206
BlsI GCNGC 1 cut(s) 207
Bme1390I CCNGG 1 cut(s) 100
BmiI GGNNCC 2 cut(s) 39, 135
BmrFI CCNGG 1 cut(s) 100
BpmI CTGGAG 1 cut(s) 121
Bsa29I ATCGAT 1 cut(s) 238
BsaHI GRCGYC 1 cut(s) 38
BsaI GGTCTC 1 cut(s) 15
BsaJI CCNNGG 1 cut(s) 150
BsaXI ACNNNNNCTCC 2 cut(s) 94, 124
Bse118I RCCGGY 1 cut(s) 34
BseBI CCWGG 1 cut(s) 100
BseCI ATCGAT 1 cut(s) 238
BseDI CCNNGG 1 cut(s) 150
BseGI GGATG 1 cut(s) 76
BseMII CTCAG 1 cut(s) 26
BseXI GCAGC 1 cut(s) 217
BshNI GGYRCC 1 cut(s) 37
BshVI ATCGAT 1 cut(s) 238
BsiSI CCGG 1 cut(s) 35
BsmAI GTCTC 1 cut(s) 15
Bso31I GGTCTC 1 cut(s) 15
Bsp143I GATC 4 cut(s) 73, 133, 235, 239
BspCNI CTCAG 1 cut(s) 25
BspDI ATCGAT 1 cut(s) 238
BspLI GGNNCC 2 cut(s) 39, 135
BspPI GGATC 4 cut(s) 68, 128, 141, 234
BspT107I GGYRCC 1 cut(s) 37
BspTNI GGTCTC 1 cut(s) 15
BsrFI RCCGGY 1 cut(s) 34
BssAI RCCGGY 1 cut(s) 34
BssECI CCNNGG 1 cut(s) 150
BssMI GATC 4 cut(s) 73, 133, 235, 239
BssNI GRCGYC 1 cut(s) 38
BssT1I CCWWGG 1 cut(s) 150
Bst2UI CCWGG 1 cut(s) 100
BstACI GRCGYC 1 cut(s) 38
BstDEI CTNAG 1 cut(s) 12
BstF5I GGATG 1 cut(s) 76
BstH2I RGCGCY 1 cut(s) 41
BstHHI GCGC 2 cut(s) 32, 40
BstKTI GATC 4 cut(s) 76, 136, 238, 242
BstMAI GTCTC 1 cut(s) 15
BstMBI GATC 4 cut(s) 73, 133, 235, 239
BstNI CCWGG 1 cut(s) 100
BstSCI CCNGG 1 cut(s) 98
BstV1I GCAGC 1 cut(s) 217
BstX2I RGATCY 1 cut(s) 133
BstXI CCANNNNNNTGG 1 cut(s) 91
BstYI RGATCY 1 cut(s) 133
Bsu15I ATCGAT 1 cut(s) 238
BsuTUI ATCGAT 1 cut(s) 238
BtsCI GGATG 1 cut(s) 76
CfoI GCGC 2 cut(s) 32, 40
Cfr10I RCCGGY 1 cut(s) 34
ClaI ATCGAT 1 cut(s) 238
CviAII CATG 2 cut(s) 91, 166
CviJI RGCY 1 cut(s) 208
CviKI_1 RGCY 1 cut(s) 208
DdeI CTNAG 1 cut(s) 12
DinI GGCGCC 1 cut(s) 39
DpnI GATC 4 cut(s) 75, 135, 237, 241
DpnII GATC 4 cut(s) 73, 133, 235, 239
DraIII CACNNNGTG 1 cut(s) 94
Eco130I CCWWGG 1 cut(s) 150
Eco31I GGTCTC 1 cut(s) 15
EcoRII CCWGG 1 cut(s) 98
EcoT14I CCWWGG 1 cut(s) 150
EgeI GGCGCC 1 cut(s) 39
EheI GGCGCC 1 cut(s) 39
ErhI CCWWGG 1 cut(s) 150
FaeI CATG 2 cut(s) 94, 169
FaiI YATR 5 cut(s) 58, 92, 167, 217, 219
FatI CATG 2 cut(s) 90, 165
FauNDI CATATG 1 cut(s) 217
Fnu4HI GCNGC 1 cut(s) 206
FokI GGATG 1 cut(s) 83
Fsp4HI GCNGC 1 cut(s) 206
FspBI CTAG 1 cut(s) 117
GlaI GCGC 2 cut(s) 31, 39
GluI GCNGC 1 cut(s) 206
GsuI CTGGAG 1 cut(s) 121
HaeII RGCGCY 1 cut(s) 41
HapII CCGG 1 cut(s) 35
HhaI GCGC 2 cut(s) 32, 40
Hin1I GRCGYC 1 cut(s) 38
Hin1II CATG 2 cut(s) 94, 169
Hin6I GCGC 2 cut(s) 30, 38
HinP1I GCGC 2 cut(s) 30, 38
HpaII CCGG 1 cut(s) 35
Hpy188I TCNGA 1 cut(s) 48
Hpy188III TCNNGA 2 cut(s) 199, 243
HpyAV CCTTC 1 cut(s) 87
HpyF3I CTNAG 1 cut(s) 12
Hsp92I GRCGYC 1 cut(s) 38
Hsp92II CATG 2 cut(s) 94, 169
HspAI GCGC 2 cut(s) 30, 38
KasI GGCGCC 1 cut(s) 37
Kzo9I GATC 4 cut(s) 73, 133, 235, 239
LpnPI CCDG 4 cut(s) 9, 48, 85, 112
Lsp1109I GCAGC 1 cut(s) 217
MaeI CTAG 1 cut(s) 117
MalI GATC 4 cut(s) 75, 135, 237, 241
MboI GATC 4 cut(s) 73, 133, 235, 239
MboII GAAGA 1 cut(s) 72
MflI RGATCY 1 cut(s) 133
MluCI AATT 1 cut(s) 184
Mly113I GGCGCC 1 cut(s) 38
MmeI TCCRAC 1 cut(s) 108
MnlI CCTC 1 cut(s) 195
MroXI GAANNNNTTC 1 cut(s) 159
MseI TTAA 1 cut(s) 210
MspI CCGG 1 cut(s) 35
MspR9I CCNGG 1 cut(s) 100
MvaI CCWGG 1 cut(s) 100
NarI GGCGCC 1 cut(s) 38
NdeI CATATG 1 cut(s) 217
NdeII GATC 4 cut(s) 73, 133, 235, 239
NlaIII CATG 2 cut(s) 94, 169
NlaIV GGNNCC 2 cut(s) 39, 135
PdmI GAANNNNTTC 1 cut(s) 159
PfoI TCCNGGA 1 cut(s) 98
PkrI GCNGC 1 cut(s) 207
PluTI GGCGCC 1 cut(s) 41
Psp6I CCWGG 1 cut(s) 98
PspGI CCWGG 1 cut(s) 98
PspN4I GGNNCC 2 cut(s) 39, 135
PsuI RGATCY 1 cut(s) 133
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 1 cut(s) 206
Sau3AI GATC 4 cut(s) 73, 133, 235, 239
ScrFI CCNGG 1 cut(s) 100
SetI ASST 1 cut(s) 210
SfoI GGCGCC 1 cut(s) 39
SgrAI CRCCGGYG 1 cut(s) 34
Sse9I AATT 1 cut(s) 184
SspDI GGCGCC 1 cut(s) 37
SspMI CTAG 1 cut(s) 117
StyD4I CCNGG 1 cut(s) 98
StyI CCWWGG 1 cut(s) 150
TaqI TCGA 2 cut(s) 191, 238
TasI AATT 1 cut(s) 184
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TseI GCWGC 1 cut(s) 205
XmnI GAANNNNTTC 1 cut(s) 159
XspI CTAG 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.