Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0004731

Physical Location & Seq

Genomic Coordinates Forward (+)

21870548 .. 21872656

Gene Structure 2109 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGATCAATATGGATGTGAAAGGTGCAACCTGGGTTGGGGTTGTATACCAGAAATTCGAGACTATGTGCTTGGAGGACACAGTCAAATTTGTTGAGAATCAGGTACAGACTGTTGGTGCAAGTGTTAAAAAGTTCTACGCAGATGTAATGCAAGATTTGGTCTGTCACTCTTCAGCCTTTGGGGACCCTGTAGAAAATAATTTTCATGTTGATAATTCTAAAAAGTCAAAGGTTAGCAAGAAAGGAGAGCCGGTAAAAGTTGATGTTGAAAAATTGAGTGGGGATTCAGAGGTGATTGCTGCAATGAATATGGATATGGACCATAAATCATTGTTCTGTGGACAGCACATGGATGAATATCGCATGCTATCCTCAGGGAATTGTGCTGGAGGAGCATGCTCTGATGTATACTTAAGACAAGACTATGATGGGAGTAATTTTAATAATTCAAACTCGGTTGTCAAAGAAAACCCAATCAAGGAGAACTTTCCCGGGGCAATCACTCTGGTTGAATCTGATTTGGGCAGGCCATCATCATCCTGCTGTGTAAATTTGAATGATACCCATGAAGTTTCGAGGAAATGTAGAGATACAGCTATAACGCCATCTATAACCAAAGGTGTGACATGTAAGTCCACAAGGGAAAGTTGTGTGATTGCAAATGCAAGCCAATGTACAGCTGATGTTTCAGTTGACAGCCGAACATCTAATATGATTGTTTTGGATAAATTGGAAGCAAAAGAATGGAACGAAATACCGGATTCATCCTTTGGTGGCTCATCAGTAGAATCAAATGGATCCTCTCCAAGTGGACAAGTACACTCTGAAAAACATGCTGCCGAGGAAATCTCTGCGTCTCATCCTGGGGGTTTGCATGACTCCAATTTTCATGCAACTGAGAGTAATACTGTTGTACATGGAACGGAAACCATTCAACAATCTGAAAGGGTAAAGCTTGAGGAGACTTGTGTAATGGTGACTGATGAGGACGTTCATTTTGTTCCTCACGTGGACAGCAAGCATAGGCCTGACAAGAAAAAAATTCAGAATGCCTTTGCTTTGAGGAAGAGGTCAGCAAGGAAGCAAGAATATGAGCAGATTGCATTATGGTATGGGGATGATGAAAAATCAAATTTAGAAAGTGGAGAACGTCTCGGGCATTCTCCGACTGTGGAGGAGACACAGAAATCACCAGCTCATGAATTTTGTGAATCTGAATGGGAGATTCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

411

Amino Acids

45.25

Weight (kDa)

5.16

Isoelectric Point (pI)

36.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31130 AT2G31130 AT2G31130 AT2G31130 AT2G31130 AT2G31130 AT2G31130
fragaria_vesca	FvH4_6g27121 FvH4_6g27121
malus_domestica	MD09G1239700.v1.1 MD17G1232800.v1.1
prunus_persica	Prupe.3G122900_v2.0.a1
pyrus_communis	pycom09g15830 pycom17g23540 pycom17g23560
rosa_chinensis	RchiOBHm_Chr2g0128471 RchiOBHm_Chr2g0128481 RchiOBHm_Chr2g0129081
rosa_laevigata	RLG00000019053
rosa_multiflora	Rmu_ssc0000449.1_g000008
rosa_roxburghii	Rroxscaffold_2G00114890
rosa_rugosa	Rorug02G0284300.1 Rorug02G0284400 Rorug02G0284500
rosa_samantha	Rh2AG336700 Rh2BG344700 Rh2CG324000 Rh2DG361600 Rh3BG289900 Rh5AG278500
rosa_wichuraiana	Rw2G027300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	631
AccI	GTMKAC	2 cut(s)	45, 408
AclWI	GGATC	2 cut(s)	792, 805
AcsI	RAATTY	6 cut(s)	53, 86, 550, 1041, 1132, 1202
AcuI	CTGAAG	1 cut(s)	156
AcvI	CACGTG	1 cut(s)	1009
AfaI	GTAC	4 cut(s)	105, 676, 819, 915
AfiI	CCNNNNNNNGG	2 cut(s)	36, 478
AflII	CTTAAG	1 cut(s)	412
AflIII	ACRYGT	1 cut(s)	626
AgsI	TTSAA	5 cut(s)	269, 450, 512, 556, 935
AjnI	CCWGG	2 cut(s)	29, 862
AluBI	AGCT	4 cut(s)	596, 680, 955, 1196
AluI	AGCT	4 cut(s)	596, 680, 955, 1196
Alw26I	GTCTC	5 cut(s)	53, 861, 956, 1157, 1172
AlwI	GGATC	2 cut(s)	792, 805
Ama87I	CYCGRG	2 cut(s)	491, 1154
AoxI	GGCC	2 cut(s)	527, 1025
ApeKI	GCWGC	2 cut(s)	299, 836
ApoI	RAATTY	6 cut(s)	53, 86, 550, 1041, 1132, 1202
ArsI	GACNNNNNNTTYG	2 cut(s)	980, 1012
Asp700I	GAANNNNTTC	1 cut(s)	930
AspS9I	GGNCC	2 cut(s)	184, 319
AsuC2I	CCSGG	2 cut(s)	492, 493
AsuHPI	GGTGA	3 cut(s)	304, 988, 1182
AvaI	CYCGRG	2 cut(s)	491, 1154
AvaII	GGWCC	2 cut(s)	184, 319
AxyI	CCTNAGG	1 cut(s)	373
BamHI	GGATCC	1 cut(s)	797
BbrPI	CACGTG	1 cut(s)	1009
BbvI	GCAGC	2 cut(s)	286, 823
BccI	CCATC	3 cut(s)	422, 538, 613
BciT130I	CCWGG	2 cut(s)	31, 864
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	2 cut(s)	492, 493
BcoDI	GTCTC	5 cut(s)	53, 861, 956, 1157, 1172
BfaI	CTAG	1 cut(s)	1231
BfmI	CTRYAG	1 cut(s)	189
BfrI	CTTAAG	1 cut(s)	412
BisI	GCNGC	2 cut(s)	300, 837
BlsI	GCNGC	2 cut(s)	301, 838
Bme1390I	CCNGG	4 cut(s)	31, 492, 493, 864
Bme18I	GGWCC	2 cut(s)	184, 319
BmeT110I	CYCGRG	2 cut(s)	491, 1154
BmgT120I	GGNCC	2 cut(s)	184, 319
BmiI	GGNNCC	3 cut(s)	185, 186, 799
BmrFI	CCNGG	4 cut(s)	31, 492, 493, 864
BplI	GAGNNNNNCTC	4 cut(s)	833, 865, 1137, 1169
BpmI	CTGGAG	1 cut(s)	408
BpuEI	CTTGAG	1 cut(s)	977
BpuMI	CCSGG	2 cut(s)	492, 493
BsaAI	YACGTR	1 cut(s)	1009
BsaBI	GATNNNNATC	1 cut(s)	357
BsaJI	CCNNGG	5 cut(s)	30, 491, 492, 840, 863
BsaWI	WCCGGW	1 cut(s)	757
BsaXI	ACNNNNNCTCC	2 cut(s)	237, 267
Bsc4I	CCNNNNNNNGG	2 cut(s)	36, 478
Bse118I	RCCGGY	1 cut(s)	250
Bse21I	CCTNAGG	1 cut(s)	373
Bse3DI	GCAATG	1 cut(s)	309
Bse8I	GATNNNNATC	1 cut(s)	357
BseBI	CCWGG	2 cut(s)	31, 864
BseDI	CCNNGG	5 cut(s)	30, 491, 492, 840, 863
BseGI	GGATG	6 cut(s)	19, 358, 536, 764, 859, 1123
BseJI	GATNNNNATC	1 cut(s)	357
BseLI	CCNNNNNNNGG	2 cut(s)	36, 478
BseMI	GCAATG	1 cut(s)	309
BseMII	CTCAG	2 cut(s)	387, 888
BseRI	GAGGAG	3 cut(s)	405, 974, 1190
BseXI	GCAGC	2 cut(s)	286, 823
BshFI	GGCC	2 cut(s)	529, 1027
BsiHKCI	CYCGRG	2 cut(s)	491, 1154
BsiSI	CCGG	3 cut(s)	251, 492, 758
BslFI	GGGAC	1 cut(s)	197
BslI	CCNNNNNNNGG	2 cut(s)	36, 478
BsmAI	GTCTC	5 cut(s)	53, 861, 956, 1157, 1172
BsmBI	CGTCTC	2 cut(s)	861, 1157
BsmFI	GGGAC	1 cut(s)	197
BsmI	GAATGC	2 cut(s)	1054, 1159
BsnI	GGCC	2 cut(s)	529, 1027
BsoBI	CYCGRG	2 cut(s)	491, 1154
Bsp1407I	TGTACA	2 cut(s)	674, 913
Bsp143I	GATC	2 cut(s)	3, 797
BspANI	GGCC	2 cut(s)	529, 1027
BspCNI	CTCAG	2 cut(s)	386, 889
BspHI	TCATGA	1 cut(s)	1198
BspLI	GGNNCC	3 cut(s)	185, 186, 799
BspPI	GGATC	2 cut(s)	792, 805
BspTI	CTTAAG	1 cut(s)	412
BsrDI	GCAATG	1 cut(s)	309
BsrFI	RCCGGY	1 cut(s)	250
BsrGI	TGTACA	2 cut(s)	674, 913
BssAI	RCCGGY	1 cut(s)	250
BssECI	CCNNGG	5 cut(s)	30, 491, 492, 840, 863
BssMI	GATC	2 cut(s)	3, 797
BssNAI	GTATAC	2 cut(s)	46, 409
Bst1107I	GTATAC	2 cut(s)	46, 409
Bst2UI	CCWGG	2 cut(s)	31, 864
Bst4CI	ACNGT	4 cut(s)	82, 112, 910, 1171
Bst6I	CTCTTC	2 cut(s)	175, 1061
BstAFI	CTTAAG	1 cut(s)	412
BstAUI	TGTACA	2 cut(s)	674, 913
BstBAI	YACGTR	1 cut(s)	1009
BstC8I	GCNNGC	5 cut(s)	365, 397, 527, 667, 1019
BstDEI	CTNAG	2 cut(s)	373, 897
BstF5I	GGATG	6 cut(s)	19, 358, 536, 764, 859, 1123
BstKTI	GATC	2 cut(s)	6, 800
BstMAI	GTCTC	5 cut(s)	53, 861, 956, 1157, 1172
BstMBI	GATC	2 cut(s)	3, 797
BstMWI	GCNNNNNNNGC	1 cut(s)	392
BstNI	CCWGG	2 cut(s)	31, 864
BstNSI	RCATGY	4 cut(s)	367, 399, 630, 836
BstSCI	CCNGG	4 cut(s)	29, 490, 491, 862
BstSFI	CTRYAG	1 cut(s)	189
BstV1I	GCAGC	2 cut(s)	286, 823
BstX2I	RGATCY	1 cut(s)	797
BstYI	RGATCY	1 cut(s)	797
BstZ17I	GTATAC	2 cut(s)	46, 409
Bsu36I	CCTNAGG	1 cut(s)	373
BsuRI	GGCC	2 cut(s)	529, 1027
BtsCI	GGATG	6 cut(s)	19, 358, 536, 764, 859, 1123
Cac8I	GCNNGC	5 cut(s)	365, 397, 527, 667, 1019
CciI	TCATGA	1 cut(s)	1198
Cfr10I	RCCGGY	1 cut(s)	250
Cfr13I	GGNCC	2 cut(s)	184, 319
Cfr9I	CCCGGG	1 cut(s)	491
CseI	GACGC	1 cut(s)	843
Csp6I	GTAC	4 cut(s)	104, 675, 818, 914
CviQI	GTAC	4 cut(s)	104, 675, 818, 914
DdeI	CTNAG	2 cut(s)	373, 897
DpnI	GATC	2 cut(s)	5, 799
DpnII	GATC	2 cut(s)	3, 797
DrdI	GACNNNNNNGTC	1 cut(s)	631
DseDI	GACNNNNNNGTC	1 cut(s)	631
Eam1104I	CTCTTC	2 cut(s)	175, 1061
EarI	CTCTTC	2 cut(s)	175, 1061
Eco147I	AGGCCT	1 cut(s)	1027
Eco47I	GGWCC	2 cut(s)	184, 319
Eco57I	CTGAAG	1 cut(s)	156
Eco72I	CACGTG	1 cut(s)	1009
Eco81I	CCTNAGG	1 cut(s)	373
Eco88I	CYCGRG	2 cut(s)	491, 1154
EcoO109I	RGGNCCY	1 cut(s)	184
EcoRII	CCWGG	2 cut(s)	29, 862
Esp3I	CGTCTC	2 cut(s)	861, 1157
FalI	AAGNNNNNCTT	2 cut(s)	470, 502
FaqI	GGGAC	1 cut(s)	197
FbaI	TGATCA	1 cut(s)	3
FblI	GTMKAC	2 cut(s)	45, 408
Fnu4HI	GCNGC	2 cut(s)	300, 837
FokI	GGATG	6 cut(s)	26, 365, 523, 751, 846, 1130
Fsp4HI	GCNGC	2 cut(s)	300, 837
FspBI	CTAG	1 cut(s)	1231
GluI	GCNGC	2 cut(s)	300, 837
GsuI	CTGGAG	1 cut(s)	408
HaeIII	GGCC	2 cut(s)	529, 1027
HapII	CCGG	3 cut(s)	251, 492, 758
HgaI	GACGC	1 cut(s)	843
HincII	GTYRAC	1 cut(s)	694
HindII	GTYRAC	1 cut(s)	694
HindIII	AAGCTT	1 cut(s)	953
HinfI	GANTC	8 cut(s)	97, 284, 512, 761, 788, 878, 1211, 1225
HpaII	CCGG	3 cut(s)	251, 492, 758
HphI	GGTGA	3 cut(s)	304, 988, 1182
Hpy166II	GTNNAC	8 cut(s)	46, 341, 409, 636, 694, 812, 820, 1012
Hpy188I	TCNGA	8 cut(s)	289, 403, 517, 826, 943, 1047, 1167, 1216
Hpy188III	TCNNGA	2 cut(s)	58, 1199
Hpy8I	GTNNAC	8 cut(s)	46, 341, 409, 636, 694, 812, 820, 1012
HpyCH4III	ACNGT	4 cut(s)	82, 112, 910, 1171
HpyCH4IV	ACGT	3 cut(s)	990, 1008, 1150
HpyCH4V	TGCA	9 cut(s)	26, 119, 151, 302, 659, 665, 874, 893, 1103
HpyF10VI	GCNNNNNNNGC	1 cut(s)	392
HpyF3I	CTNAG	2 cut(s)	373, 897
HpySE526I	ACGT	3 cut(s)	990, 1008, 1150
KflI	GGGWCCC	1 cut(s)	184
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	2 cut(s)	3, 797
LmnI	GCTCC	1 cut(s)	392
Lsp1109I	GCAGC	2 cut(s)	286, 823
MaeI	CTAG	1 cut(s)	1231
MaeII	ACGT	3 cut(s)	990, 1008, 1150
MaeIII	GTNAC	3 cut(s)	164, 622, 976
MalI	GATC	2 cut(s)	5, 799
MboI	GATC	2 cut(s)	3, 797
MboII	GAAGA	2 cut(s)	162, 1078
MflI	RGATCY	1 cut(s)	797
MlyI	GAGTC	1 cut(s)	872
MmeI	TCCRAC	1 cut(s)	1190
MroXI	GAANNNNTTC	1 cut(s)	930
MseI	TTAA	3 cut(s)	126, 413, 441
MslI	CAYNNNNRTG	1 cut(s)	351
MspA1I	CMGCKG	1 cut(s)	680
MspCI	CTTAAG	1 cut(s)	412
MspI	CCGG	3 cut(s)	251, 492, 758
MspR9I	CCNGG	4 cut(s)	31, 492, 493, 864
Mva1269I	GAATGC	2 cut(s)	1054, 1159
MvaI	CCWGG	2 cut(s)	31, 864
MwoI	GCNNNNNNNGC	1 cut(s)	392
NciI	CCSGG	2 cut(s)	492, 493
NdeII	GATC	2 cut(s)	3, 797
NlaIV	GGNNCC	3 cut(s)	185, 186, 799
NmeAIII	GCCGAG	1 cut(s)	865
NmuCI	GTSAC	3 cut(s)	164, 622, 976
NspI	RCATGY	4 cut(s)	367, 399, 630, 836
PaeI	GCATGC	2 cut(s)	367, 399
PagI	TCATGA	1 cut(s)	1198
PceI	AGGCCT	1 cut(s)	1027
PciI	ACATGT	1 cut(s)	626
PctI	GAATGC	2 cut(s)	1054, 1159
PdmI	GAANNNNTTC	1 cut(s)	930
PfeI	GAWTC	7 cut(s)	97, 284, 512, 761, 788, 1211, 1225
PflFI	GACNNNGTC	1 cut(s)	80
PkrI	GCNGC	2 cut(s)	301, 838
PleI	GAGTC	1 cut(s)	872
PmaCI	CACGTG	1 cut(s)	1009
PmlI	CACGTG	1 cut(s)	1009
PpsI	GAGTC	1 cut(s)	872
Ppu21I	YACGTR	1 cut(s)	1009
PpuMI	RGGWCCY	1 cut(s)	184
PscI	ACATGT	1 cut(s)	626
Psp5II	RGGWCCY	1 cut(s)	184
Psp6I	CCWGG	2 cut(s)	29, 862
PspCI	CACGTG	1 cut(s)	1009
PspGI	CCWGG	2 cut(s)	29, 862
PspN4I	GGNNCC	3 cut(s)	185, 186, 799
PspPI	GGNCC	2 cut(s)	184, 319
PspPPI	RGGWCCY	1 cut(s)	184
PsuI	RGATCY	1 cut(s)	797
PsyI	GACNNNGTC	1 cut(s)	80
PvuII	CAGCTG	1 cut(s)	680
RsaI	GTAC	4 cut(s)	105, 676, 819, 915
RsaNI	GTAC	4 cut(s)	104, 675, 818, 914
RseI	CAYNNNNRTG	1 cut(s)	351
SaqAI	TTAA	3 cut(s)	126, 413, 441
SatI	GCNGC	2 cut(s)	300, 837
Sau3AI	GATC	2 cut(s)	3, 797
Sau96I	GGNCC	2 cut(s)	184, 319
SchI	GAGTC	1 cut(s)	872
ScrFI	CCNGG	4 cut(s)	31, 492, 493, 864
SfcI	CTRYAG	1 cut(s)	189
SinI	GGWCC	2 cut(s)	184, 319
SmaI	CCCGGG	1 cut(s)	493
SmiMI	CAYNNNNRTG	1 cut(s)	351
SmlI	CTYRAG	2 cut(s)	412, 956
SmoI	CTYRAG	2 cut(s)	412, 956
SphI	GCATGC	2 cut(s)	367, 399
SseBI	AGGCCT	1 cut(s)	1027
SspMI	CTAG	1 cut(s)	1231
StuI	AGGCCT	1 cut(s)	1027
StyD4I	CCNGG	4 cut(s)	29, 490, 491, 862
TaaI	ACNGT	4 cut(s)	82, 112, 910, 1171
TaiI	ACGT	3 cut(s)	993, 1011, 1153
TaqI	TCGA	2 cut(s)	57, 575
TatI	WGTACW	3 cut(s)	674, 817, 913
TfiI	GAWTC	7 cut(s)	97, 284, 512, 761, 788, 1211, 1225
Tru1I	TTAA	3 cut(s)	126, 413, 441
Tru9I	TTAA	3 cut(s)	126, 413, 441
TseFI	GTSAC	3 cut(s)	164, 622, 976
TseI	GCWGC	2 cut(s)	299, 836
Tsp45I	GTSAC	3 cut(s)	164, 622, 976
TspDTI	ATGAA	9 cut(s)	194, 320, 369, 582, 753, 878, 983, 1137, 1215
TspGWI	ACGGA	1 cut(s)	938
TspMI	CCCGGG	1 cut(s)	491
Tth111I	GACNNNGTC	1 cut(s)	80
Vha464I	CTTAAG	1 cut(s)	412
VpaK11BI	GGWCC	2 cut(s)	184, 319
XapI	RAATTY	6 cut(s)	53, 86, 550, 1041, 1132, 1202
XceI	RCATGY	4 cut(s)	367, 399, 630, 836
XmaI	CCCGGG	1 cut(s)	491
XmiI	GTMKAC	2 cut(s)	45, 408
XmnI	GAANNNNTTC	1 cut(s)	930
XspI	CTAG	1 cut(s)	1231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.