pycom17g24260

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0010583
Physical Location & Seq
Reverse (-)
22565550 .. 22566618
1069 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 750 bp
ATGGCTGATGTAACTTGGATGACGAGTAGAGTAGCTGAGACTCATATTATATGTTTCTGTGTGTGTGTGTGTGTGTGTCTATTTATATATGGTATTTTTACTTATTTGTGGCCAACTTGCCAGAGAATGGATCGTAATCAAGCAAATGAATCTTCTTCAACCAAAGTTGAAAGGAGGGTTGTTGAGAAGAACAGGAGAAATCGTATGAAACTTTTTTACTCCAATCTCTACTCCCTCCTCCCTAAACAAACTTTTAAGGAGCCACTAAGTCAGACAGAACAAATAGATGAAGCCATAAAGTACATAAAAAGCCAAGAGTCGAAGCTGCAGAAGTTAAAGGAGAAGAAGGAGAGCTTAATGCGCACTAGAAAAAGATCATATGCTACAGCATGCGTAAATGTTGAGAGCACAAGGAGCGCAAAAGCACCCCAAATCAAAATCCATGAGATAGACTCCACGCTAGAGGTAGTACTGATAAGTGGCTTAGAAAATCATCAGTTCATGTTCTACGAAATCATTCGCCTGCTTGACGCAGAACATGCCAACGTTGTGCATGCTAACTTTTCAACTTTGGGAGACTCAGTGTTTCACGGAGTCCGGGCAGAAATGGGCAAATCTATGTCCAAGTTTGGGGCTGCAAGAATAACTGAAAAACTTAACAGATTTGTCAATGGATCCACCAGCGACCAAGAATCACAGCAAGACTACTTTTGCGACTTCGAATTTCAGCCTGTGACGACATGGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

250

Amino Acids

28.91

Weight (kDa)

8.56

Isoelectric Point (pI)

45.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 57 - 104 3.2e-08 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 362
AccB7I CCANNNNNTGG 1 cut(s) 127
AclI AACGTT 1 cut(s) 546
AclWI GGATC 3 cut(s) 138, 669, 682
AcoI YGGCCR 1 cut(s) 110
AcsI RAATTY 1 cut(s) 722
AfaI GTAC 2 cut(s) 302, 471
AfiI CCNNNNNNNGG 2 cut(s) 127, 630
AgsI TTSAA 3 cut(s) 159, 170, 567
AluBI AGCT 3 cut(s) 35, 325, 354
AluI AGCT 3 cut(s) 35, 325, 354
Alw21I GWGCWC 1 cut(s) 410
Alw26I GTCTC 2 cut(s) 32, 570
AlwI GGATC 3 cut(s) 138, 669, 682
AoxI GGCC 1 cut(s) 110
ApeKI GCWGC 2 cut(s) 325, 635
ApoI RAATTY 1 cut(s) 722
Asp700I GAANNNNTTC 1 cut(s) 516
AspLEI GCGC 2 cut(s) 363, 419
AsuC2I CCSGG 1 cut(s) 599
AsuII TTCGAA 1 cut(s) 720
BalI TGGCCA 1 cut(s) 112
BamHI GGATCC 1 cut(s) 674
Bbv12I GWGCWC 1 cut(s) 410
BbvI GCAGC 2 cut(s) 312, 622
BcnI CCSGG 1 cut(s) 599
BcoDI GTCTC 2 cut(s) 32, 570
BfaI CTAG 2 cut(s) 366, 461
BfmI CTRYAG 2 cut(s) 326, 384
BisI GCNGC 2 cut(s) 326, 636
BlsI GCNGC 2 cut(s) 327, 637
BmcAI AGTACT 1 cut(s) 471
Bme1390I CCNGG 1 cut(s) 599
BmiI GGNNCC 2 cut(s) 261, 676
BmrFI CCNGG 1 cut(s) 599
BplI GAGNNNNNCTC 2 cut(s) 437, 469
Bpu14I TTCGAA 1 cut(s) 720
BpuMI CCSGG 1 cut(s) 599
BsaBI GATNNNNATC 1 cut(s) 135
BsaXI ACNNNNNCTCC 4 cut(s) 187, 217, 567, 597
Bsc4I CCNNNNNNNGG 2 cut(s) 127, 630
Bse8I GATNNNNATC 1 cut(s) 135
BseGI GGATG 1 cut(s) 24
BseJI GATNNNNATC 1 cut(s) 135
BseLI CCNNNNNNNGG 2 cut(s) 127, 630
BseMII CTCAG 2 cut(s) 27, 594
BseRI GAGGAG 1 cut(s) 227
BseXI GCAGC 2 cut(s) 312, 622
BshFI GGCC 1 cut(s) 112
BsiHKAI GWGCWC 1 cut(s) 410
BsiSI CCGG 1 cut(s) 598
BslI CCNNNNNNNGG 2 cut(s) 127, 630
BsmAI GTCTC 2 cut(s) 32, 570
BsnI GGCC 1 cut(s) 112
Bsp119I TTCGAA 1 cut(s) 720
Bsp1286I GDGCHC 1 cut(s) 410
Bsp143I GATC 3 cut(s) 130, 374, 674
BspANI GGCC 1 cut(s) 112
BspCNI CTCAG 2 cut(s) 28, 593
BspLI GGNNCC 2 cut(s) 261, 676
BspMAI CTGCAG 1 cut(s) 330
BspPI GGATC 3 cut(s) 138, 669, 682
BspT104I TTCGAA 1 cut(s) 720
BssMI GATC 3 cut(s) 130, 374, 674
BstAPI GCANNNNNTGC 1 cut(s) 539
BstBI TTCGAA 1 cut(s) 720
BstC8I GCNNGC 3 cut(s) 391, 524, 555
BstDEI CTNAG 4 cut(s) 36, 266, 484, 580
BstF5I GGATG 1 cut(s) 24
BstHHI GCGC 2 cut(s) 363, 419
BstKTI GATC 3 cut(s) 133, 377, 677
BstMAI GTCTC 2 cut(s) 32, 570
BstMBI GATC 3 cut(s) 130, 374, 674
BstMWI GCNNNNNNNGC 3 cut(s) 360, 414, 539
BstNSI RCATGY 3 cut(s) 393, 542, 557
BstSCI CCNGG 1 cut(s) 597
BstSFI CTRYAG 2 cut(s) 326, 384
BstV1I GCAGC 2 cut(s) 312, 622
BstX2I RGATCY 1 cut(s) 674
BstYI RGATCY 1 cut(s) 674
BsuRI GGCC 1 cut(s) 112
BtsCI GGATG 1 cut(s) 24
BtsIMutI CAGTG 1 cut(s) 588
Cac8I GCNNGC 3 cut(s) 391, 524, 555
CfoI GCGC 2 cut(s) 363, 419
CseI GACGC 1 cut(s) 539
Csp6I GTAC 2 cut(s) 301, 470
CviAII CATG 6 cut(s) 390, 443, 502, 539, 554, 741
CviQI GTAC 2 cut(s) 301, 470
DdeI CTNAG 4 cut(s) 36, 266, 484, 580
DpnI GATC 3 cut(s) 132, 376, 676
DpnII GATC 3 cut(s) 130, 374, 674
EaeI YGGCCR 1 cut(s) 110
FaeI CATG 6 cut(s) 393, 446, 505, 542, 557, 744
FalI AAGNNNNNCTT 2 cut(s) 338, 370
FatI CATG 6 cut(s) 389, 442, 501, 538, 553, 740
FauNDI CATATG 1 cut(s) 379
Fnu4HI GCNGC 2 cut(s) 326, 636
FokI GGATG 1 cut(s) 31
Fsp4HI GCNGC 2 cut(s) 326, 636
FspAI RTGCGCAY 1 cut(s) 362
FspBI CTAG 2 cut(s) 366, 461
FspI TGCGCA 1 cut(s) 362
GlaI GCGC 2 cut(s) 362, 418
GluI GCNGC 2 cut(s) 326, 636
HaeIII GGCC 1 cut(s) 112
HapII CCGG 1 cut(s) 598
HgaI GACGC 1 cut(s) 539
HhaI GCGC 2 cut(s) 363, 419
Hin1II CATG 6 cut(s) 393, 446, 505, 542, 557, 744
Hin6I GCGC 2 cut(s) 361, 417
HinP1I GCGC 2 cut(s) 361, 417
HinfI GANTC 7 cut(s) 40, 149, 317, 452, 578, 594, 692
HpaII CCGG 1 cut(s) 598
Hpy188I TCNGA 1 cut(s) 273
HpyAV CCTTC 1 cut(s) 340
HpyCH4IV ACGT 1 cut(s) 546
HpyCH4V TGCA 3 cut(s) 328, 553, 638
HpyF10VI GCNNNNNNNGC 3 cut(s) 360, 414, 539
HpyF3I CTNAG 4 cut(s) 36, 266, 484, 580
HpySE526I ACGT 1 cut(s) 546
Hsp92II CATG 6 cut(s) 393, 446, 505, 542, 557, 744
HspAI GCGC 2 cut(s) 361, 417
Kzo9I GATC 3 cut(s) 130, 374, 674
LmnI GCTCC 2 cut(s) 259, 414
LpnPI CCDG 6 cut(s) 134, 178, 536, 611, 694, 744
Lsp1109I GCAGC 2 cut(s) 312, 622
MaeI CTAG 2 cut(s) 366, 461
MaeII ACGT 1 cut(s) 546
MaeIII GTNAC 2 cut(s) 10, 733
MalI GATC 3 cut(s) 132, 376, 676
MboI GATC 3 cut(s) 130, 374, 674
MboII GAAGA 4 cut(s) 144, 147, 199, 355
MflI RGATCY 1 cut(s) 674
MhlI GDGCHC 1 cut(s) 410
MlsI TGGCCA 1 cut(s) 112
MluCI AATT 1 cut(s) 722
MluNI TGGCCA 1 cut(s) 112
MlyI GAGTC 5 cut(s) 34, 326, 446, 572, 603
MnlI CCTC 4 cut(s) 168, 245, 248, 457
Mox20I TGGCCA 1 cut(s) 112
MroXI GAANNNNTTC 1 cut(s) 516
MscI TGGCCA 1 cut(s) 112
MseI TTAA 4 cut(s) 255, 335, 356, 657
Msp20I TGGCCA 1 cut(s) 112
MspI CCGG 1 cut(s) 598
MspR9I CCNGG 1 cut(s) 599
MwoI GCNNNNNNNGC 3 cut(s) 360, 414, 539
NciI CCSGG 1 cut(s) 599
NdeI CATATG 1 cut(s) 379
NdeII GATC 3 cut(s) 130, 374, 674
NlaIII CATG 6 cut(s) 393, 446, 505, 542, 557, 744
NlaIV GGNNCC 2 cut(s) 261, 676
NmuCI GTSAC 1 cut(s) 733
NsbI TGCGCA 1 cut(s) 362
NspI RCATGY 3 cut(s) 393, 542, 557
NspV TTCGAA 1 cut(s) 720
PaeI GCATGC 2 cut(s) 393, 557
PdmI GAANNNNTTC 1 cut(s) 516
PfeI GAWTC 2 cut(s) 149, 692
PflMI CCANNNNNTGG 1 cut(s) 127
PkrI GCNGC 2 cut(s) 327, 637
PleI GAGTC 5 cut(s) 34, 325, 446, 572, 602
PpsI GAGTC 5 cut(s) 34, 325, 446, 572, 602
Psp1406I AACGTT 1 cut(s) 546
PspN4I GGNNCC 2 cut(s) 261, 676
PstI CTGCAG 1 cut(s) 330
PsuI RGATCY 1 cut(s) 674
RsaI GTAC 2 cut(s) 302, 471
RsaNI GTAC 2 cut(s) 301, 470
SaqAI TTAA 4 cut(s) 255, 335, 356, 657
SatI GCNGC 2 cut(s) 326, 636
Sau3AI GATC 3 cut(s) 130, 374, 674
ScaI AGTACT 1 cut(s) 471
SchI GAGTC 5 cut(s) 34, 326, 446, 572, 603
ScrFI CCNGG 1 cut(s) 599
SduI GDGCHC 1 cut(s) 410
SetI ASST 5 cut(s) 37, 327, 356, 468, 549
SfcI CTRYAG 2 cut(s) 326, 384
SfuI TTCGAA 1 cut(s) 720
SphI GCATGC 2 cut(s) 393, 557
Sse9I AATT 1 cut(s) 722
SspMI CTAG 2 cut(s) 366, 461
StyD4I CCNGG 1 cut(s) 597
TaiI ACGT 1 cut(s) 549
TaqI TCGA 2 cut(s) 320, 720
TasI AATT 1 cut(s) 722
TatI WGTACW 2 cut(s) 300, 469
TfiI GAWTC 2 cut(s) 149, 692
Tru1I TTAA 4 cut(s) 255, 335, 356, 657
Tru9I TTAA 4 cut(s) 255, 335, 356, 657
TscAI CASTG 1 cut(s) 588
TseFI GTSAC 1 cut(s) 733
TseI GCWGC 2 cut(s) 325, 635
Tsp45I GTSAC 1 cut(s) 733
TspDTI ATGAA 4 cut(s) 162, 221, 303, 490
TspGWI ACGGA 1 cut(s) 606
TspRI CASTG 1 cut(s) 588
Van91I CCANNNNNTGG 1 cut(s) 127
XapI RAATTY 1 cut(s) 722
XceI RCATGY 3 cut(s) 393, 542, 557
XmnI GAANNNNTTC 1 cut(s) 516
XspI CTAG 2 cut(s) 366, 461
ZrmI AGTACT 1 cut(s) 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.