Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0003711

Physical Location & Seq

Genomic Coordinates Forward (+)

25973252 .. 25975102

Gene Structure 1851 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGGCGGAGAAGAAACCACCAGTTATTTCGTATCAGATGAGTTTTCTCTTGATATGATTCCGGTGCACTCCCAAGGTGCACATGGATCATCAACACCCATTATTTTTGGGTGTTCTACCACGGTGTCCGGTCTTTTTGCTGAGACCGACCTTTCACTCGATGGGATATTGGGATTAAGCCAAGGCCCATTGTCTGTCGTATCACAGTTATCCTCTCGAGGGATAACTCTGAATGTCTTCTCCCAACTGTTTAAAGGGAGATGGCGATGGTGGAGGTACACTTGTACTGGGGGAGATTTTGGAGCCGAGTATTGTGTATACTCCCCTTGTCCCCAATTCAGAAAGTCTTATTATGCAATCAACCTTGAAAGCATTGCAGTCAATGGGCAAATCTTGCCCATTGATCCAGCAGCTTTCAGAACATTAGATGATCAATTTACCGTTGTTGACACTGGAACCACATTGGCTTATTTTGTAGAAGAGGCATATGAACCTCTTGTTCGTGCGATAACTTTGGCTTCCAACTTTGTGTCTCCCATCATTTCAGGAAAGTCACAATGTTATCTGATCTACACCAGTTTGGGGAAGTCATTTCCTTTGGTCACACTCATCTTTGCAGCTGCTGCGTCAATGACTTTGACACCACAAGACTACCTGCTATATTCAGGATCTCATGTTGGTGCTGCTATGTGGTGTCTAGGTTTCAAGAAAACTCGGGAAGCAAGCCGAGGCTTCACGGTGTTAGGAGATCTTGTTCTGAGAGATAAGATTGTGGTATATGATTTAGCCCGTCAGCAACTTGGATGGGTTAATTACAATTGTAACTCATCTCAGGTGAATTTCTCTACAGCTTTTCACCCGACACACCGAAGTGGAAGCAGTGGCTCATCAGGAGACACACTAATCAAGTTGCTAAAAACTGTGACTGTGCTCCTCTTGATGCATTTGTTCAATCTGTATATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

322

Amino Acids

35.17

Weight (kDa)

6.06

Isoelectric Point (pI)

28.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	6 - 82	5.2e-09	Xylanase inhibitor N-terminal
Asp	PF00026	114 - 268	2.5e-10	Eukaryotic aspartyl protease
TAXi_C	PF14541	118 - 269	6.5e-21	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36670 AT2G36670 AT2G36670 AT2G36670
fragaria_vesca	FvH4_6g17290 FvH4_6g17290
malus_domestica	MD09G1292800.v1.1 MD12G1102500.v1.1 MD14G1096400.v1.1 MD16G1113800.v1.1 MD17G1282200.v1.1 MD17G1282300.v1.1 MD17G1282800.v1.1 MD17G1283200.v1.1
prunus_persica	Prupe.7G007000_v2.0.a1 Prupe.7G007500_v2.0.a1 Prupe.7G122500_v2.0.a1 Prupe.7G122500_v2.0.a1
pyrus_communis	pycom06g08820 pycom09g07760 pycom09g19650 pycom12g10050 pycom14g09440 pycom16g09750 pycom17g27920
rosa_chinensis	RchiOBHm_Chr3g0471401
rosa_laevigata	RLG00000024180
rosa_roxburghii	Rroxscaffold_6G00409970
rosa_rugosa	Rorug03G0117700
rosa_samantha	Rh3AG167400 Rh3BG192900 Rh3CG183300 Rh3DG182600
rosa_wichuraiana	Rw3G015770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	663
AccI	GTMKAC	1 cut(s)	318
AciI	CCGC	1 cut(s)	6
AclWI	GGATC	3 cut(s)	94, 398, 676
AcsI	RAATTY	1 cut(s)	838
AfaI	GTAC	2 cut(s)	278, 286
AfiI	CCNNNNNNNGG	2 cut(s)	219, 582
AgsI	TTSAA	3 cut(s)	368, 706, 952
AleI	CACNNNNGTG	1 cut(s)	870
AloI	GAACNNNNNNTCC	2 cut(s)	738, 770
AluBI	AGCT	3 cut(s)	413, 620, 851
AluI	AGCT	3 cut(s)	413, 620, 851
Alw21I	GWGCWC	3 cut(s)	69, 82, 933
Alw26I	GTCTC	3 cut(s)	137, 537, 888
Alw44I	GTGCAC	2 cut(s)	65, 78
AlwI	GGATC	3 cut(s)	94, 398, 676
AlwNI	CAGNNNCTG	1 cut(s)	623
Ama87I	CYCGRG	2 cut(s)	216, 714
AoxI	GGCC	1 cut(s)	184
ApaLI	GTGCAC	2 cut(s)	65, 78
ApeKI	GCWGC	5 cut(s)	410, 617, 620, 623, 683
ApoI	RAATTY	1 cut(s)	838
Asp700I	GAANNNNTTC	1 cut(s)	236
AspS9I	GGNCC	1 cut(s)	185
AsuHPI	GGTGA	2 cut(s)	847, 848
AvaI	CYCGRG	2 cut(s)	216, 714
BaeGI	GKGCMC	2 cut(s)	69, 82
BaeI	ACNNNNGTAYC	2 cut(s)	268, 301
BbsI	GAAGAC	1 cut(s)	229
Bbv12I	GWGCWC	3 cut(s)	69, 82, 933
BbvI	GCAGC	5 cut(s)	422, 607, 610, 629, 670
BccI	CCATC	5 cut(s)	155, 255, 261, 545, 798
BclI	TGATCA	1 cut(s)	430
BcoDI	GTCTC	3 cut(s)	137, 537, 888
BfaI	CTAG	1 cut(s)	698
BfmI	CTRYAG	1 cut(s)	846
BfuAI	ACCTGC	1 cut(s)	663
BglII	AGATCT	1 cut(s)	748
BisI	GCNGC	5 cut(s)	411, 618, 621, 624, 684
BlsI	GCNGC	5 cut(s)	412, 619, 622, 625, 685
BmeT110I	CYCGRG	2 cut(s)	216, 714
BmgT120I	GGNCC	1 cut(s)	185
BmiI	GGNNCC	2 cut(s)	304, 457
BmrI	ACTGGG	1 cut(s)	297
BmsI	GCATC	1 cut(s)	930
BmuI	ACTGGG	1 cut(s)	297
BpiI	GAAGAC	1 cut(s)	229
BsaI	GGTCTC	1 cut(s)	137
BsaJI	CCNNGG	4 cut(s)	73, 120, 181, 727
BsaWI	WCCGGW	2 cut(s)	61, 128
BsaXI	ACNNNNNCTCC	2 cut(s)	738, 768
Bsc4I	CCNNNNNNNGG	2 cut(s)	219, 582
Bse1I	ACTGG	4 cut(s)	21, 292, 457, 576
Bse3DI	GCAATG	1 cut(s)	372
BseDI	CCNNGG	4 cut(s)	73, 120, 181, 727
BseGI	GGATG	1 cut(s)	809
BseLI	CCNNNNNNNGG	2 cut(s)	219, 582
BseMI	GCAATG	1 cut(s)	372
BseMII	CTCAG	3 cut(s)	132, 749, 845
BseNI	ACTGG	4 cut(s)	21, 292, 457, 576
BseRI	GAGGAG	1 cut(s)	923
BseSI	GKGCMC	2 cut(s)	69, 82
BseXI	GCAGC	5 cut(s)	422, 607, 610, 629, 670
BshFI	GGCC	1 cut(s)	186
BsiHKAI	GWGCWC	3 cut(s)	69, 82, 933
BsiHKCI	CYCGRG	2 cut(s)	216, 714
BsiSI	CCGG	2 cut(s)	62, 129
BslFI	GGGAC	1 cut(s)	315
BslI	CCNNNNNNNGG	2 cut(s)	219, 582
BsmAI	GTCTC	3 cut(s)	137, 537, 888
BsmFI	GGGAC	1 cut(s)	315
BsnI	GGCC	1 cut(s)	186
Bso31I	GGTCTC	1 cut(s)	137
BsoBI	CYCGRG	2 cut(s)	216, 714
Bsp1286I	GDGCHC	3 cut(s)	69, 82, 933
Bsp143I	GATC	6 cut(s)	86, 403, 430, 567, 668, 748
BspACI	CCGC	1 cut(s)	6
BspANI	GGCC	1 cut(s)	186
BspCNI	CTCAG	3 cut(s)	133, 750, 844
BspLI	GGNNCC	2 cut(s)	304, 457
BspMI	ACCTGC	1 cut(s)	663
BspPI	GGATC	3 cut(s)	94, 398, 676
BspTNI	GGTCTC	1 cut(s)	137
BsrDI	GCAATG	1 cut(s)	372
BsrI	ACTGG	4 cut(s)	21, 292, 457, 576
BssECI	CCNNGG	4 cut(s)	73, 120, 181, 727
BssMI	GATC	6 cut(s)	86, 403, 430, 567, 668, 748
BssNAI	GTATAC	1 cut(s)	319
BssT1I	CCWWGG	2 cut(s)	73, 181
Bst1107I	GTATAC	1 cut(s)	319
Bst4CI	ACNGT	7 cut(s)	124, 207, 249, 442, 739, 922, 928
Bst6I	CTCTTC	1 cut(s)	474
BstAPI	GCANNNNNTGC	2 cut(s)	394, 623
BstC8I	GCNNGC	1 cut(s)	724
BstDEI	CTNAG	3 cut(s)	141, 758, 831
BstDSI	CCRYGG	1 cut(s)	120
BstF5I	GGATG	1 cut(s)	809
BstKTI	GATC	6 cut(s)	89, 406, 433, 570, 671, 751
BstMAI	GTCTC	3 cut(s)	137, 537, 888
BstMBI	GATC	6 cut(s)	86, 403, 430, 567, 668, 748
BstMWI	GCNNNNNNNGC	2 cut(s)	394, 623
BstSFI	CTRYAG	1 cut(s)	846
BstSLI	GKGCMC	2 cut(s)	69, 82
BstV1I	GCAGC	5 cut(s)	422, 607, 610, 629, 670
BstV2I	GAAGAC	1 cut(s)	229
BstX2I	RGATCY	2 cut(s)	668, 748
BstYI	RGATCY	2 cut(s)	668, 748
BstZ17I	GTATAC	1 cut(s)	319
BsuRI	GGCC	1 cut(s)	186
BtgI	CCRYGG	1 cut(s)	120
BtgZI	GCGATG	1 cut(s)	280
BtsCI	GGATG	1 cut(s)	809
BtsI	GCAGTG	1 cut(s)	886
BtsIMutI	CAGTG	2 cut(s)	450, 886
BveI	ACCTGC	1 cut(s)	663
Cac8I	GCNNGC	1 cut(s)	724
CaiI	CAGNNNCTG	1 cut(s)	623
Cfr13I	GGNCC	1 cut(s)	185
CseI	GACGC	1 cut(s)	615
Csp6I	GTAC	2 cut(s)	277, 285
CviAII	CATG	2 cut(s)	83, 674
CviQI	GTAC	2 cut(s)	277, 285
DdeI	CTNAG	3 cut(s)	141, 758, 831
DpnI	GATC	6 cut(s)	88, 405, 432, 569, 670, 750
DpnII	GATC	6 cut(s)	86, 403, 430, 567, 668, 748
DraI	TTTAAA	1 cut(s)	253
Eam1104I	CTCTTC	1 cut(s)	474
EarI	CTCTTC	1 cut(s)	474
EciI	GGCGGA	1 cut(s)	21
Eco130I	CCWWGG	2 cut(s)	73, 181
Eco31I	GGTCTC	1 cut(s)	137
Eco88I	CYCGRG	2 cut(s)	216, 714
EcoT14I	CCWWGG	2 cut(s)	73, 181
EcoT22I	ATGCAT	1 cut(s)	945
ErhI	CCWWGG	2 cut(s)	73, 181
FaeI	CATG	2 cut(s)	86, 677
FaqI	GGGAC	1 cut(s)	315
FatI	CATG	2 cut(s)	82, 673
FauNDI	CATATG	1 cut(s)	487
FbaI	TGATCA	1 cut(s)	430
FblI	GTMKAC	1 cut(s)	318
Fnu4HI	GCNGC	5 cut(s)	411, 618, 621, 624, 684
FokI	GGATG	1 cut(s)	816
Fsp4HI	GCNGC	5 cut(s)	411, 618, 621, 624, 684
FspBI	CTAG	1 cut(s)	698
GluI	GCNGC	5 cut(s)	411, 618, 621, 624, 684
HaeIII	GGCC	1 cut(s)	186
HapII	CCGG	2 cut(s)	62, 129
HgaI	GACGC	1 cut(s)	615
Hin1II	CATG	2 cut(s)	86, 677
HincII	GTYRAC	1 cut(s)	448
HindII	GTYRAC	1 cut(s)	448
HinfI	GANTC	1 cut(s)	58
HpaII	CCGG	2 cut(s)	62, 129
HphI	GGTGA	2 cut(s)	847, 848
Hpy166II	GTNNAC	5 cut(s)	67, 80, 279, 319, 448
Hpy188I	TCNGA	6 cut(s)	37, 231, 341, 419, 567, 759
Hpy188III	TCNNGA	8 cut(s)	50, 216, 546, 666, 706, 716, 891, 937
Hpy8I	GTNNAC	5 cut(s)	67, 80, 279, 319, 448
HpyCH4III	ACNGT	7 cut(s)	124, 207, 249, 442, 739, 922, 928
HpyCH4V	TGCA	6 cut(s)	67, 80, 356, 377, 617, 943
HpyF10VI	GCNNNNNNNGC	2 cut(s)	394, 623
HpyF3I	CTNAG	3 cut(s)	141, 758, 831
Hsp92II	CATG	2 cut(s)	86, 677
Ksp22I	TGATCA	1 cut(s)	430
Kzo9I	GATC	6 cut(s)	86, 403, 430, 567, 668, 748
LmnI	GCTCC	2 cut(s)	302, 936
Lsp1109I	GCAGC	5 cut(s)	422, 607, 610, 629, 670
LweI	GCATC	1 cut(s)	930
MaeI	CTAG	1 cut(s)	698
MaeIII	GTNAC	4 cut(s)	552, 601, 821, 922
MalI	GATC	6 cut(s)	88, 405, 432, 569, 670, 750
MboI	GATC	6 cut(s)	86, 403, 430, 567, 668, 748
MboII	GAAGA	3 cut(s)	23, 229, 491
MfeI	CAATTG	1 cut(s)	817
MflI	RGATCY	2 cut(s)	668, 748
MhlI	GDGCHC	3 cut(s)	69, 82, 933
MluCI	AATT	5 cut(s)	335, 434, 811, 817, 838
MmeI	TCCRAC	1 cut(s)	546
MnlI	CCTC	7 cut(s)	212, 223, 267, 475, 504, 722, 944
Mph1103I	ATGCAT	1 cut(s)	945
MroXI	GAANNNNTTC	1 cut(s)	236
MseI	TTAA	3 cut(s)	176, 252, 810
MslI	CAYNNNNRTG	2 cut(s)	678, 870
MspA1I	CMGCKG	1 cut(s)	620
MspI	CCGG	2 cut(s)	62, 129
MunI	CAATTG	1 cut(s)	817
MwoI	GCNNNNNNNGC	2 cut(s)	394, 623
NdeI	CATATG	1 cut(s)	487
NdeII	GATC	6 cut(s)	86, 403, 430, 567, 668, 748
NlaIII	CATG	2 cut(s)	86, 677
NlaIV	GGNNCC	2 cut(s)	304, 457
NmeAIII	GCCGAG	2 cut(s)	331, 752
NmuCI	GTSAC	3 cut(s)	552, 601, 922
NsiI	ATGCAT	1 cut(s)	945
OliI	CACNNNNGTG	1 cut(s)	870
PaeR7I	CTCGAG	1 cut(s)	216
PdmI	GAANNNNTTC	1 cut(s)	236
PfeI	GAWTC	1 cut(s)	58
PkrI	GCNGC	5 cut(s)	412, 619, 622, 625, 685
PspN4I	GGNNCC	2 cut(s)	304, 457
PspPI	GGNCC	1 cut(s)	185
PstNI	CAGNNNCTG	1 cut(s)	623
PsuI	RGATCY	2 cut(s)	668, 748
PvuII	CAGCTG	1 cut(s)	620
RsaI	GTAC	2 cut(s)	278, 286
RsaNI	GTAC	2 cut(s)	277, 285
RseI	CAYNNNNRTG	2 cut(s)	678, 870
SaqAI	TTAA	3 cut(s)	176, 252, 810
SatI	GCNGC	5 cut(s)	411, 618, 621, 624, 684
Sau3AI	GATC	6 cut(s)	86, 403, 430, 567, 668, 748
Sau96I	GGNCC	1 cut(s)	185
SduI	GDGCHC	3 cut(s)	69, 82, 933
SfaNI	GCATC	1 cut(s)	930
SfcI	CTRYAG	1 cut(s)	846
Sfr274I	CTCGAG	1 cut(s)	216
SlaI	CTCGAG	1 cut(s)	216
SmiMI	CAYNNNNRTG	2 cut(s)	678, 870
SmlI	CTYRAG	1 cut(s)	216
SmoI	CTYRAG	1 cut(s)	216
Sse9I	AATT	5 cut(s)	335, 434, 811, 817, 838
SsiI	CCGC	1 cut(s)	6
SspMI	CTAG	1 cut(s)	698
StyI	CCWWGG	2 cut(s)	73, 181
TaaI	ACNGT	7 cut(s)	124, 207, 249, 442, 739, 922, 928
TaqI	TCGA	2 cut(s)	159, 217
TaqII	GACCGA	1 cut(s)	161
TasI	AATT	5 cut(s)	335, 434, 811, 817, 838
TatI	WGTACW	1 cut(s)	284
TfiI	GAWTC	1 cut(s)	58
Tru1I	TTAA	3 cut(s)	176, 252, 810
Tru9I	TTAA	3 cut(s)	176, 252, 810
TscAI	CASTG	2 cut(s)	457, 886
TseFI	GTSAC	3 cut(s)	552, 601, 922
TseI	GCWGC	5 cut(s)	410, 617, 620, 623, 683
Tsp45I	GTSAC	3 cut(s)	552, 601, 922
TspDTI	ATGAA	1 cut(s)	504
TspRI	CASTG	2 cut(s)	457, 886
VneI	GTGCAC	2 cut(s)	65, 78
XapI	RAATTY	1 cut(s)	838
XcmI	CCANNNNNNNNNTGG	1 cut(s)	80
XhoI	CTCGAG	1 cut(s)	216
XmiI	GTMKAC	1 cut(s)	318
XmnI	GAANNNNTTC	1 cut(s)	236
XspI	CTAG	1 cut(s)	698
Zsp2I	ATGCAT	1 cut(s)	945

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.