Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0007718

Physical Location & Seq

Genomic Coordinates Forward (+)

26161955 .. 26167044

Gene Structure 5090 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g28130.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGATAATGGAAGTGGCACAGACAGGGTGGAAATTATGGTATTCATATTCATGGGGGTTAAGAGTAGTAGGGGGAGTAGGTGGTGTTTCAAGAAGAAGCAGTGGCAGAGCAGCTGCTGCTGCTGTAACACTAAGAAGAAAGGAAAGCTTCAATAACTGGGCGTGGTCCCAAAAGCATCCACCACCGCCACAATCCTTCTTCTTCGTACGGTGCTGTAAGTACGGAAGTAGCAGCAGCAGCAGCAGTAGCAGCGTCAGTGCTAGTAATAGTAATGGGCCTAATGGCTCCAATGTCGGAAAGGGATATCTGCAATCTACGGACCAAGAGCTGATGAGCCAGTGCCAAATGGACACTTTCAAGACGTCGGGTCCGGGGGGTCAGCACCGTAACAAGCGAGAGTCTGCCGTACGCCTCAAGCATCTCCCCACCGGTATTACTGCGCAGGCTGCGGAGGACCGATCCCAGCATATGAATCGTGCCTCAGCCTTGGCTCGTCTTCGCACTCTTATAGCACTCAAAGTCAGGAACACCGTCGATCTCGATGCTTATTCCCCTCCTCGAGAGCTTCTTCAAATTCTTCCCCCAAAGTCTACCATCAGAGGCTCAGATTGTGGTCCCCAAATTGGTCCCAACAATCCTAAGTTCATTTTGGGAATGCAAGCTCTGCTGGATCTCATTTTCACAGTTGACGGTTCTGTCTCGGAGACAGCAAAGTTCCTGGGGTTGAGCACAGGTGCTCTGTCGCGGTTAATACTCTCGAATGATTCTTTCCGACTAGCAGTCAATGAACTAAGGTTTTCCAAGGGTATGAAGCCTCTCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RF-1

Protein Analysis

275

Amino Acids

29.8

Weight (kDa)

10.26

Isoelectric Point (pI)

44.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007718)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33330 AT1G33330 AT1G33330
fragaria_vesca	FvH4_2g16920
malus_domestica	MD17G1285500.v1.1
prunus_persica	Prupe.3G000100_v2.0.a1 Prupe.3G000100_v2.0.a1 Prupe.3G000100_v2.0.a1
pyrus_communis	pycom17g28130
rosa_chinensis	RchiOBHm_Chr6g0281061
rosa_laevigata	RLG00000013000
rosa_multiflora	Rmu_sc0001705.1_g000003
rosa_roxburghii	Rroxscaffold_7G00187340
rosa_rugosa	Rorug06G0138400 Rorug06G0138500 Rorug06G0138600 Rorug06G0138600 Rorug06G0138600 Rorug06G0138700
rosa_samantha	Rh6AG250900 Rh6BG253500 Rh6CG253400 Rh6DG245000
rosa_wichuraiana	Rw6G021750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	695
AatII	GACGTC	1 cut(s)	365
Acc16I	TGCGCA	1 cut(s)	441
AccI	GTMKAC	1 cut(s)	590
AccII	CGCG	1 cut(s)	745
AciI	CCGC	3 cut(s)	185, 449, 745
AclWI	GGATC	2 cut(s)	453, 678
AcsI	RAATTY	1 cut(s)	573
AcyI	GRCGYC	1 cut(s)	362
AfaI	GTAC	3 cut(s)	207, 221, 408
AfiI	CCNNNNNNNGG	1 cut(s)	623
AgeI	ACCGGT	1 cut(s)	428
AgsI	TTSAA	4 cut(s)	90, 151, 358, 572
AhdI	GACNNNNNGTC	2 cut(s)	366, 779
AjnI	CCWGG	1 cut(s)	717
AluBI	AGCT	5 cut(s)	113, 147, 328, 565, 662
AluI	AGCT	5 cut(s)	113, 147, 328, 565, 662
Alw21I	GWGCWC	2 cut(s)	731, 739
Alw26I	GTCTC	2 cut(s)	698, 703
AlwI	GGATC	2 cut(s)	453, 678
AlwNI	CAGNNNCTG	1 cut(s)	116
Ama87I	CYCGRG	1 cut(s)	558
AoxI	GGCC	1 cut(s)	275
ApoI	RAATTY	1 cut(s)	573
AsiGI	ACCGGT	1 cut(s)	428
AspLEI	GCGC	1 cut(s)	442
AspS9I	GGNCC	7 cut(s)	165, 275, 319, 368, 454, 614, 626
AsuC2I	CCSGG	1 cut(s)	372
AvaI	CYCGRG	1 cut(s)	558
AvaII	GGWCC	6 cut(s)	165, 319, 368, 454, 614, 626
BbsI	GAAGAC	1 cut(s)	488
Bbv12I	GWGCWC	2 cut(s)	731, 739
BbvCI	CCTCAGC	1 cut(s)	481
BccI	CCATC	1 cut(s)	602
BceAI	ACGGC	1 cut(s)	389
BcgI	CGANNNNNNTGC	4 cut(s)	455, 489, 524, 558
BciT130I	CCWGG	1 cut(s)	719
BcnI	CCSGG	1 cut(s)	372
BcoDI	GTCTC	2 cut(s)	698, 703
BfaI	CTAG	2 cut(s)	261, 776
Bme1390I	CCNGG	2 cut(s)	372, 719
Bme18I	GGWCC	6 cut(s)	165, 319, 368, 454, 614, 626
BmeRI	GACNNNNNGTC	2 cut(s)	366, 779
BmeT110I	CYCGRG	1 cut(s)	558
BmgT120I	GGNCC	7 cut(s)	165, 275, 319, 368, 454, 614, 626
BmiI	GGNNCC	5 cut(s)	167, 286, 369, 616, 628
BmrFI	CCNGG	2 cut(s)	372, 719
BmrI	ACTGGG	1 cut(s)	166
BmsI	GCATC	3 cut(s)	184, 427, 532
BmuI	ACTGGG	1 cut(s)	166
BpiI	GAAGAC	1 cut(s)	488
Bpu10I	CCTNAGC	1 cut(s)	481
BpuEI	CTTGAG	2 cut(s)	398, 803
BpuMI	CCSGG	1 cut(s)	372
BsaHI	GRCGYC	1 cut(s)	362
BsaJI	CCNNGG	4 cut(s)	371, 486, 718, 801
BsaWI	WCCGGW	1 cut(s)	428
Bsc4I	CCNNNNNNNGG	1 cut(s)	623
Bse118I	RCCGGY	1 cut(s)	428
Bse1I	ACTGG	2 cut(s)	161, 337
BseBI	CCWGG	1 cut(s)	719
BseDI	CCNNGG	4 cut(s)	371, 486, 718, 801
BseGI	GGATG	1 cut(s)	175
BseLI	CCNNNNNNNGG	1 cut(s)	623
BseMII	CTCAG	2 cut(s)	495, 618
BseNI	ACTGG	2 cut(s)	161, 337
BseRI	GAGGAG	1 cut(s)	546
BseYI	CCCAGC	1 cut(s)	462
Bsh1236I	CGCG	1 cut(s)	745
BshFI	GGCC	1 cut(s)	277
BshTI	ACCGGT	1 cut(s)	428
BsiHKAI	GWGCWC	2 cut(s)	731, 739
BsiHKCI	CYCGRG	1 cut(s)	558
BsiSI	CCGG	2 cut(s)	371, 429
BsiWI	CGTACG	2 cut(s)	205, 406
BslFI	GGGAC	3 cut(s)	151, 600, 612
BslI	CCNNNNNNNGG	1 cut(s)	623
BsmAI	GTCTC	2 cut(s)	698, 703
BsmFI	GGGAC	3 cut(s)	151, 600, 612
BsmI	GAATGC	1 cut(s)	660
BsnI	GGCC	1 cut(s)	277
BsoBI	CYCGRG	1 cut(s)	558
Bsp1286I	GDGCHC	2 cut(s)	731, 739
Bsp143I	GATC	3 cut(s)	458, 535, 670
BspACI	CCGC	3 cut(s)	185, 449, 745
BspANI	GGCC	1 cut(s)	277
BspCNI	CTCAG	2 cut(s)	494, 617
BspFNI	CGCG	1 cut(s)	745
BspLI	GGNNCC	5 cut(s)	167, 286, 369, 616, 628
BspPI	GGATC	2 cut(s)	453, 678
BsrFI	RCCGGY	1 cut(s)	428
BsrI	ACTGG	2 cut(s)	161, 337
BssAI	RCCGGY	1 cut(s)	428
BssECI	CCNNGG	4 cut(s)	371, 486, 718, 801
BssMI	GATC	3 cut(s)	458, 535, 670
BssNI	GRCGYC	1 cut(s)	362
BssT1I	CCWWGG	2 cut(s)	486, 801
Bst2UI	CCWGG	1 cut(s)	719
Bst4CI	ACNGT	5 cut(s)	210, 386, 532, 685, 692
BstACI	GRCGYC	1 cut(s)	362
BstAPI	GCANNNNNTGC	2 cut(s)	116, 664
BstC8I	GCNNGC	2 cut(s)	444, 660
BstDEI	CTNAG	5 cut(s)	131, 481, 604, 639, 791
BstF5I	GGATG	1 cut(s)	175
BstFNI	CGCG	1 cut(s)	745
BstHHI	GCGC	1 cut(s)	442
BstKTI	GATC	3 cut(s)	461, 538, 673
BstMAI	GTCTC	2 cut(s)	698, 703
BstMBI	GATC	3 cut(s)	458, 535, 670
BstMWI	GCNNNNNNNGC	8 cut(s)	116, 119, 237, 240, 246, 249, 446, 664
BstNI	CCWGG	1 cut(s)	719
BstSCI	CCNGG	2 cut(s)	370, 717
BstUI	CGCG	1 cut(s)	745
BstV2I	GAAGAC	1 cut(s)	488
BstX2I	RGATCY	1 cut(s)	670
BstYI	RGATCY	1 cut(s)	670
BsuRI	GGCC	1 cut(s)	277
BtsCI	GGATG	1 cut(s)	175
BtsI	GCAGTG	1 cut(s)	106
BtsIMutI	CAGTG	3 cut(s)	106, 262, 344
Cac8I	GCNNGC	2 cut(s)	444, 660
CaiI	CAGNNNCTG	1 cut(s)	116
CfoI	GCGC	1 cut(s)	442
Cfr10I	RCCGGY	1 cut(s)	428
Cfr13I	GGNCC	7 cut(s)	165, 275, 319, 368, 454, 614, 626
CseI	GACGC	1 cut(s)	241
Csp6I	GTAC	3 cut(s)	206, 220, 407
CspAI	ACCGGT	1 cut(s)	428
CviAII	CATG	1 cut(s)	51
CviQI	GTAC	3 cut(s)	206, 220, 407
DdeI	CTNAG	5 cut(s)	131, 481, 604, 639, 791
DpnI	GATC	3 cut(s)	460, 537, 672
DpnII	GATC	3 cut(s)	458, 535, 670
DrdI	GACNNNNNNGTC	1 cut(s)	695
DriI	GACNNNNNGTC	2 cut(s)	366, 779
DseDI	GACNNNNNNGTC	1 cut(s)	695
Eam1105I	GACNNNNNGTC	2 cut(s)	366, 779
Eco130I	CCWWGG	2 cut(s)	486, 801
Eco32I	GATATC	1 cut(s)	305
Eco47I	GGWCC	6 cut(s)	165, 319, 368, 454, 614, 626
Eco88I	CYCGRG	1 cut(s)	558
EcoRII	CCWGG	1 cut(s)	717
EcoRV	GATATC	1 cut(s)	305
EcoT14I	CCWWGG	2 cut(s)	486, 801
ErhI	CCWWGG	2 cut(s)	486, 801
FaeI	CATG	1 cut(s)	54
FaiI	YATR	7 cut(s)	37, 46, 52, 468, 470, 509, 809
FalI	AAGNNNNNCTT	2 cut(s)	131, 163
FaqI	GGGAC	3 cut(s)	151, 600, 612
FatI	CATG	1 cut(s)	50
FauNDI	CATATG	1 cut(s)	468
FblI	GTMKAC	1 cut(s)	590
FokI	GGATG	1 cut(s)	162
FspBI	CTAG	2 cut(s)	261, 776
FspI	TGCGCA	1 cut(s)	441
GlaI	GCGC	1 cut(s)	441
GsaI	CCCAGC	1 cut(s)	466
HaeIII	GGCC	1 cut(s)	277
HapII	CCGG	2 cut(s)	371, 429
HgaI	GACGC	1 cut(s)	241
HhaI	GCGC	1 cut(s)	442
Hin1I	GRCGYC	1 cut(s)	362
Hin1II	CATG	1 cut(s)	54
Hin6I	GCGC	1 cut(s)	440
HinP1I	GCGC	1 cut(s)	440
HincII	GTYRAC	1 cut(s)	688
HindII	GTYRAC	1 cut(s)	688
HindIII	AAGCTT	1 cut(s)	145
HinfI	GANTC	3 cut(s)	398, 472, 764
HpaII	CCGG	2 cut(s)	371, 429
Hpy166II	GTNNAC	2 cut(s)	591, 688
Hpy188I	TCNGA	5 cut(s)	296, 599, 607, 703, 773
Hpy188III	TCNNGA	6 cut(s)	90, 358, 523, 539, 560, 757
Hpy8I	GTNNAC	2 cut(s)	591, 688
Hpy99I	CGWCG	2 cut(s)	367, 536
HpyAV	CCTTC	1 cut(s)	205
HpyCH4III	ACNGT	5 cut(s)	210, 386, 532, 685, 692
HpyCH4IV	ACGT	1 cut(s)	362
HpyCH4V	TGCA	2 cut(s)	310, 658
HpyF10VI	GCNNNNNNNGC	8 cut(s)	116, 119, 237, 240, 246, 249, 446, 664
HpyF3I	CTNAG	5 cut(s)	131, 481, 604, 639, 791
HpySE526I	ACGT	1 cut(s)	362
Hsp92I	GRCGYC	1 cut(s)	362
Hsp92II	CATG	1 cut(s)	54
HspAI	GCGC	1 cut(s)	440
Kzo9I	GATC	3 cut(s)	458, 535, 670
LmnI	GCTCC	1 cut(s)	290
LweI	GCATC	3 cut(s)	184, 427, 532
MaeI	CTAG	2 cut(s)	261, 776
MaeII	ACGT	1 cut(s)	362
MaeIII	GTNAC	2 cut(s)	124, 386
MalI	GATC	3 cut(s)	460, 537, 672
MboI	GATC	3 cut(s)	458, 535, 670
MboII	GAAGA	7 cut(s)	105, 147, 190, 193, 488, 560, 569
MflI	RGATCY	1 cut(s)	670
MhlI	GDGCHC	2 cut(s)	731, 739
MluCI	AATT	3 cut(s)	32, 573, 621
MlyI	GAGTC	1 cut(s)	407
MmeI	TCCRAC	2 cut(s)	274, 796
MnlI	CCTC	7 cut(s)	422, 445, 490, 564, 567, 593, 825
MseI	TTAA	2 cut(s)	59, 749
MslI	CAYNNNNRTG	1 cut(s)	49
MspA1I	CMGCKG	1 cut(s)	113
MspI	CCGG	2 cut(s)	371, 429
MspR9I	CCNGG	2 cut(s)	372, 719
Mva1269I	GAATGC	1 cut(s)	660
MvaI	CCWGG	1 cut(s)	719
MvnI	CGCG	1 cut(s)	745
MwoI	GCNNNNNNNGC	8 cut(s)	116, 119, 237, 240, 246, 249, 446, 664
NciI	CCSGG	1 cut(s)	372
NdeI	CATATG	1 cut(s)	468
NdeII	GATC	3 cut(s)	458, 535, 670
NlaIII	CATG	1 cut(s)	54
NlaIV	GGNNCC	5 cut(s)	167, 286, 369, 616, 628
NsbI	TGCGCA	1 cut(s)	441
PaeR7I	CTCGAG	1 cut(s)	558
PctI	GAATGC	1 cut(s)	660
PfeI	GAWTC	2 cut(s)	472, 764
Pfl23II	CGTACG	2 cut(s)	205, 406
PinAI	ACCGGT	1 cut(s)	428
PleI	GAGTC	1 cut(s)	406
PpsI	GAGTC	1 cut(s)	406
Psp6I	CCWGG	1 cut(s)	717
PspFI	CCCAGC	1 cut(s)	462
PspGI	CCWGG	1 cut(s)	717
PspLI	CGTACG	2 cut(s)	205, 406
PspN4I	GGNNCC	5 cut(s)	167, 286, 369, 616, 628
PspPI	GGNCC	7 cut(s)	165, 275, 319, 368, 454, 614, 626
PstNI	CAGNNNCTG	1 cut(s)	116
PsuI	RGATCY	1 cut(s)	670
PvuII	CAGCTG	1 cut(s)	113
RsaI	GTAC	3 cut(s)	207, 221, 408
RsaNI	GTAC	3 cut(s)	206, 220, 407
RseI	CAYNNNNRTG	1 cut(s)	49
SaqAI	TTAA	2 cut(s)	59, 749
Sau3AI	GATC	3 cut(s)	458, 535, 670
Sau96I	GGNCC	7 cut(s)	165, 275, 319, 368, 454, 614, 626
SchI	GAGTC	1 cut(s)	407
ScrFI	CCNGG	2 cut(s)	372, 719
SduI	GDGCHC	2 cut(s)	731, 739
SetI	ASST	9 cut(s)	82, 115, 149, 330, 365, 567, 664, 736, 797
SfaNI	GCATC	3 cut(s)	184, 427, 532
Sfr274I	CTCGAG	1 cut(s)	558
SinI	GGWCC	6 cut(s)	165, 319, 368, 454, 614, 626
SlaI	CTCGAG	1 cut(s)	558
SmiMI	CAYNNNNRTG	1 cut(s)	49
SmlI	CTYRAG	3 cut(s)	413, 558, 818
SmoI	CTYRAG	3 cut(s)	413, 558, 818
Sse9I	AATT	3 cut(s)	32, 573, 621
SsiI	CCGC	3 cut(s)	185, 449, 745
SspMI	CTAG	2 cut(s)	261, 776
StyD4I	CCNGG	2 cut(s)	370, 717
StyI	CCWWGG	2 cut(s)	486, 801
TaaI	ACNGT	5 cut(s)	210, 386, 532, 685, 692
TaiI	ACGT	1 cut(s)	365
TaqI	TCGA	4 cut(s)	534, 540, 559, 758
TaqII	GACCGA	1 cut(s)	471
TasI	AATT	3 cut(s)	32, 573, 621
TfiI	GAWTC	2 cut(s)	472, 764
Tru1I	TTAA	2 cut(s)	59, 749
Tru9I	TTAA	2 cut(s)	59, 749
TscAI	CASTG	3 cut(s)	106, 262, 344
TspDTI	ATGAA	6 cut(s)	33, 39, 485, 634, 801, 824
TspGWI	ACGGA	2 cut(s)	237, 332
TspRI	CASTG	3 cut(s)	106, 262, 344
VpaK11BI	GGWCC	6 cut(s)	165, 319, 368, 454, 614, 626
XapI	RAATTY	1 cut(s)	573
XhoI	CTCGAG	1 cut(s)	558
XmiI	GTMKAC	1 cut(s)	590
XspI	CTAG	2 cut(s)	261, 776
ZraI	GACGTC	1 cut(s)	363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.