Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_290

Orthogroup ID

OG0006628

Physical Location & Seq

Genomic Coordinates Forward (+)

110480 .. 112476

Gene Structure 1997 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGGGAAGGCTATCATCCAAGCAGCAAATTCTGCAGGACTCACTGTGGTTCCAGTTTCTTTTGGCTCCGCTGAGGAATCTGGCCAAACCGTCCAAGTCGGTACGAACGAGATTCTAGTGCATGGTCCTCATGAAAGAGAAAGCACCCTTGCATCCCTTTTCCAGAAATATCCCAATTTGATTGTCGTCGGCTTCACTGTCCCTTCTGCAGTCAATAATAACGCAGAGCTATATTGCAAAGTTGGAGTGCCCTTTGTGATGGTCACAACAGGCGGGGACAGGGATCAGTTGTATAAGACTGTCGAAGACTCAAAAGTCTATGTAGTGATTTCCCCACAAATGGGGAAACAGGTTGTGGCATTTCTTGCAGCCATGGATATCATGGCCGAGCAATTTCCTGGAGCCTTCTCTGGGTATTCGCTACAGGTGATGGAATCCCATCAAGCAAGTAAAGTTGACACATCTGGAACTGCCAAGGCTGTTATTTCTTGCTTCCAGAAGTTGGGGGTGTCCTTTGATATGGAACAGATCCAATTGATCCGAGATTGCCAGCAACAACTAGAGTTGGTGGGAGTTCCAGAGGAGCATTTGTCTGGTCATGCATTTCATAAGTATCATCTGACTTCACCTCATCAAATAGTTTCTTTTGAGTTTCAGCATAATGTTTGTGGTAGATCAATATATGCAGAGGGTACAATTGATGCTGTTATTTTCCTTGCCAAAAAGATTTATTCGAAGGCAGACAAGCGGATCTACAATATGATGGATGTCCTGGGAGAGGGTAACATGCGATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0008839 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016491 GO:0016627 GO:0016628 GO:0019752 GO:0019877 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046451 GO:0055114 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00261 ko00300 ko01100 ko01110 ko01120 ko01130 ko01230 map00261 map00300 map01100 map01110 map01120 map01130 map01230

Pfam Domains

Protein Families

DapB_C DapB_N

Protein Analysis

266

Amino Acids

28.93

Weight (kDa)

5.83

Isoelectric Point (pI)

31.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DapB_N	PF01113	1 - 114	3.9e-11	Dihydrodipicolinate reductase, N-terminus
DapB_C	PF05173	118 - 258	2.7e-14	Dihydrodipicolinate reductase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44040 AT3G59890 AT3G59890
fragaria_vesca	FvH4_2g00280 FvH4_2g00280 FvH4_2g00280 FvH4_2g00280 FvH4_2g00280 FvH4_2g00630
malus_domestica	MD15G1142500.v1.1
prunus_persica	Prupe.6G152500_v2.0.a1 Prupe.6G152500_v2.0.a1
pyrus_communis	pycom290g00130
rosa_chinensis	RchiOBHm_Chr2g0084421 RchiOBHm_Chr2g0126841
rosa_laevigata	RLG00000015615
rosa_multiflora	Rmu_sc0009404.1_g000008 Rmu_sc0025868.1_g000003
rosa_roxburghii	Rroxscaffold_2G00156110
rosa_rugosa	Rorug01G0453400
rosa_samantha	Rh2AG001600 Rh2BG001400 Rh2BG329900 Rh2CG001500 Rh2DG001700
rosa_wichuraiana	Rw2G000140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	314
AccB7I	CCANNNNNTGG	1 cut(s)	502
AciI	CCGC	3 cut(s)	69, 273, 748
AclWI	GGATC	4 cut(s)	291, 523, 532, 758
AcoI	YGGCCR	2 cut(s)	82, 384
AcsI	RAATTY	1 cut(s)	28
AfaI	GTAC	2 cut(s)	103, 694
AfiI	CCNNNNNNNGG	5 cut(s)	340, 341, 411, 502, 778
AjnI	CCWGG	2 cut(s)	397, 771
AluBI	AGCT	1 cut(s)	229
AluI	AGCT	1 cut(s)	229
AlwI	GGATC	4 cut(s)	291, 523, 532, 758
AoxI	GGCC	2 cut(s)	82, 384
ApeKI	GCWGC	2 cut(s)	23, 368
ApoI	RAATTY	1 cut(s)	28
AspS9I	GGNCC	1 cut(s)	125
AsuHPI	GGTGA	2 cut(s)	439, 618
AsuII	TTCGAA	1 cut(s)	734
AvaII	GGWCC	1 cut(s)	125
BaeGI	GKGCMC	1 cut(s)	252
BalI	TGGCCA	1 cut(s)	84
BbsI	GAAGAC	1 cut(s)	312
BbvCI	CCTCAGC	1 cut(s)	72
BbvI	GCAGC	2 cut(s)	35, 380
BccI	CCATC	4 cut(s)	253, 424, 447, 757
BciT130I	CCWGG	2 cut(s)	399, 773
BfaI	CTAG	2 cut(s)	116, 560
BfmI	CTRYAG	3 cut(s)	33, 207, 422
BisI	GCNGC	2 cut(s)	24, 369
BlsI	GCNGC	2 cut(s)	25, 370
Bme1390I	CCNGG	2 cut(s)	399, 773
Bme18I	GGWCC	1 cut(s)	125
BmgT120I	GGNCC	1 cut(s)	125
BmiI	GGNNCC	3 cut(s)	51, 67, 403
BmrFI	CCNGG	2 cut(s)	399, 773
BmsI	GCATC	2 cut(s)	161, 691
BpiI	GAAGAC	1 cut(s)	312
BpmI	CTGGAG	1 cut(s)	420
Bpu10I	CCTNAGC	1 cut(s)	72
Bpu14I	TTCGAA	1 cut(s)	734
BsaJI	CCNNGG	3 cut(s)	372, 474, 772
BsaXI	ACNNNNNCTCC	2 cut(s)	575, 605
Bsc4I	CCNNNNNNNGG	5 cut(s)	340, 341, 411, 502, 778
Bse1I	ACTGG	1 cut(s)	53
BseBI	CCWGG	2 cut(s)	399, 773
BseDI	CCNNGG	3 cut(s)	372, 474, 772
BseGI	GGATG	3 cut(s)	15, 152, 772
BseLI	CCNNNNNNNGG	5 cut(s)	340, 341, 411, 502, 778
BseMII	CTCAG	1 cut(s)	63
BseNI	ACTGG	1 cut(s)	53
BseRI	GAGGAG	1 cut(s)	596
BseSI	GKGCMC	1 cut(s)	252
BseXI	GCAGC	2 cut(s)	35, 380
BshFI	GGCC	2 cut(s)	84, 386
BslFI	GGGAC	2 cut(s)	185, 290
BslI	CCNNNNNNNGG	5 cut(s)	340, 341, 411, 502, 778
BsmFI	GGGAC	2 cut(s)	185, 290
BsnI	GGCC	2 cut(s)	84, 386
Bsp119I	TTCGAA	1 cut(s)	734
Bsp1286I	GDGCHC	1 cut(s)	252
Bsp143I	GATC	6 cut(s)	283, 528, 537, 674, 750, 791
Bsp19I	CCATGG	1 cut(s)	372
BspACI	CCGC	3 cut(s)	69, 273, 748
BspANI	GGCC	2 cut(s)	84, 386
BspCNI	CTCAG	1 cut(s)	64
BspHI	TCATGA	1 cut(s)	130
BspLI	GGNNCC	3 cut(s)	51, 67, 403
BspMAI	CTGCAG	2 cut(s)	37, 211
BspPI	GGATC	4 cut(s)	291, 523, 532, 758
BspT104I	TTCGAA	1 cut(s)	734
BsrI	ACTGG	1 cut(s)	53
BssECI	CCNNGG	3 cut(s)	372, 474, 772
BssMI	GATC	6 cut(s)	283, 528, 537, 674, 750, 791
BssT1I	CCWWGG	2 cut(s)	372, 474
Bst2UI	CCWGG	2 cut(s)	399, 773
Bst4CI	ACNGT	4 cut(s)	46, 91, 199, 301
BstAPI	GCANNNNNTGC	2 cut(s)	32, 365
BstBI	TTCGAA	1 cut(s)	734
BstC8I	GCNNGC	1 cut(s)	551
BstDEI	CTNAG	1 cut(s)	72
BstDSI	CCRYGG	1 cut(s)	372
BstENI	CCTNNNNNAGG	1 cut(s)	776
BstF5I	GGATG	3 cut(s)	15, 152, 772
BstKTI	GATC	6 cut(s)	286, 531, 540, 677, 753, 794
BstMBI	GATC	6 cut(s)	283, 528, 537, 674, 750, 791
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 365
BstNI	CCWGG	2 cut(s)	399, 773
BstNSI	RCATGY	1 cut(s)	790
BstSCI	CCNGG	2 cut(s)	397, 771
BstSFI	CTRYAG	3 cut(s)	33, 207, 422
BstSLI	GKGCMC	1 cut(s)	252
BstV1I	GCAGC	2 cut(s)	35, 380
BstV2I	GAAGAC	1 cut(s)	312
BstX2I	RGATCY	2 cut(s)	528, 750
BstYI	RGATCY	2 cut(s)	528, 750
BsuRI	GGCC	2 cut(s)	84, 386
BtgI	CCRYGG	1 cut(s)	372
BtsCI	GGATG	3 cut(s)	15, 152, 772
BtsIMutI	CAGTG	2 cut(s)	42, 195
Cac8I	GCNNGC	1 cut(s)	551
CciI	TCATGA	1 cut(s)	130
Cfr13I	GGNCC	1 cut(s)	125
Csp6I	GTAC	2 cut(s)	102, 693
CviAII	CATG	6 cut(s)	122, 131, 373, 382, 599, 787
CviJI	RGCY	9 cut(s)	11, 66, 84, 192, 229, 371, 386, 404, 479
CviKI_1	RGCY	9 cut(s)	11, 66, 84, 192, 229, 371, 386, 404, 479
CviQI	GTAC	2 cut(s)	102, 693
DdeI	CTNAG	1 cut(s)	72
DpnI	GATC	6 cut(s)	285, 530, 539, 676, 752, 793
DpnII	GATC	6 cut(s)	283, 528, 537, 674, 750, 791
DrdI	GACNNNNNNGTC	1 cut(s)	314
DseDI	GACNNNNNNGTC	1 cut(s)	314
EaeI	YGGCCR	2 cut(s)	82, 384
Eco130I	CCWWGG	2 cut(s)	372, 474
Eco32I	GATATC	1 cut(s)	379
Eco47I	GGWCC	1 cut(s)	125
EcoNI	CCTNNNNNAGG	1 cut(s)	776
EcoRII	CCWGG	2 cut(s)	397, 771
EcoRV	GATATC	1 cut(s)	379
EcoT14I	CCWWGG	2 cut(s)	372, 474
EcoT22I	ATGCAT	1 cut(s)	604
ErhI	CCWWGG	2 cut(s)	372, 474
FaeI	CATG	6 cut(s)	125, 134, 376, 385, 602, 790
FaqI	GGGAC	2 cut(s)	185, 290
FatI	CATG	6 cut(s)	121, 130, 372, 381, 598, 786
FauI	CCCGC	1 cut(s)	266
Fnu4HI	GCNGC	2 cut(s)	24, 369
FokI	GGATG	3 cut(s)	2, 139, 779
Fsp4HI	GCNGC	2 cut(s)	24, 369
FspBI	CTAG	2 cut(s)	116, 560
GluI	GCNGC	2 cut(s)	24, 369
GsuI	CTGGAG	1 cut(s)	420
HaeIII	GGCC	2 cut(s)	84, 386
Hin1II	CATG	6 cut(s)	125, 134, 376, 385, 602, 790
HincII	GTYRAC	1 cut(s)	457
HindII	GTYRAC	1 cut(s)	457
HinfI	GANTC	5 cut(s)	39, 77, 112, 308, 434
HphI	GGTGA	2 cut(s)	439, 618
Hpy166II	GTNNAC	1 cut(s)	457
Hpy188I	TCNGA	2 cut(s)	542, 621
Hpy188III	TCNNGA	5 cut(s)	131, 163, 465, 496, 578
Hpy8I	GTNNAC	1 cut(s)	457
Hpy99I	CGWCG	1 cut(s)	191
HpyAV	CCTTC	3 cut(s)	213, 415, 730
HpyCH4III	ACNGT	4 cut(s)	46, 91, 199, 301
HpyCH4V	TGCA	8 cut(s)	35, 121, 152, 209, 237, 368, 602, 686
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 365
HpyF3I	CTNAG	1 cut(s)	72
Hsp92II	CATG	6 cut(s)	125, 134, 376, 385, 602, 790
Kzo9I	GATC	6 cut(s)	283, 528, 537, 674, 750, 791
LmnI	GCTCC	3 cut(s)	71, 401, 583
Lsp1109I	GCAGC	2 cut(s)	35, 380
LweI	GCATC	2 cut(s)	161, 691
MaeI	CTAG	2 cut(s)	116, 560
MaeIII	GTNAC	2 cut(s)	262, 782
MalI	GATC	6 cut(s)	285, 530, 539, 676, 752, 793
MboI	GATC	6 cut(s)	283, 528, 537, 674, 750, 791
MboII	GAAGA	1 cut(s)	317
MfeI	CAATTG	2 cut(s)	533, 696
MflI	RGATCY	2 cut(s)	528, 750
MhlI	GDGCHC	1 cut(s)	252
MlsI	TGGCCA	1 cut(s)	84
MluCI	AATT	5 cut(s)	28, 175, 392, 533, 696
MluNI	TGGCCA	1 cut(s)	84
MlyI	GAGTC	2 cut(s)	33, 302
MmeI	TCCRAC	1 cut(s)	223
MnlI	CCTC	6 cut(s)	67, 138, 574, 639, 682, 772
Mox20I	TGGCCA	1 cut(s)	84
Mph1103I	ATGCAT	1 cut(s)	604
MscI	TGGCCA	1 cut(s)	84
Msp20I	TGGCCA	1 cut(s)	84
MspA1I	CMGCKG	1 cut(s)	71
MspR9I	CCNGG	2 cut(s)	399, 773
MunI	CAATTG	2 cut(s)	533, 696
MvaI	CCWGG	2 cut(s)	399, 773
MwoI	GCNNNNNNNGC	2 cut(s)	32, 365
NcoI	CCATGG	1 cut(s)	372
NdeII	GATC	6 cut(s)	283, 528, 537, 674, 750, 791
NlaIII	CATG	6 cut(s)	125, 134, 376, 385, 602, 790
NlaIV	GGNNCC	3 cut(s)	51, 67, 403
NmeAIII	GCCGAG	1 cut(s)	412
NmuCI	GTSAC	1 cut(s)	262
NsiI	ATGCAT	1 cut(s)	604
NspI	RCATGY	1 cut(s)	790
NspV	TTCGAA	1 cut(s)	734
PagI	TCATGA	1 cut(s)	130
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PfeI	GAWTC	3 cut(s)	77, 112, 434
PflMI	CCANNNNNTGG	1 cut(s)	502
PfoI	TCCNGGA	1 cut(s)	397
PkrI	GCNGC	2 cut(s)	25, 370
PleI	GAGTC	2 cut(s)	33, 302
PpsI	GAGTC	2 cut(s)	33, 302
Psp6I	CCWGG	2 cut(s)	397, 771
PspGI	CCWGG	2 cut(s)	397, 771
PspN4I	GGNNCC	3 cut(s)	51, 67, 403
PspPI	GGNCC	1 cut(s)	125
PstI	CTGCAG	2 cut(s)	37, 211
PsuI	RGATCY	2 cut(s)	528, 750
RsaI	GTAC	2 cut(s)	103, 694
RsaNI	GTAC	2 cut(s)	102, 693
SatI	GCNGC	2 cut(s)	24, 369
Sau3AI	GATC	6 cut(s)	283, 528, 537, 674, 750, 791
Sau96I	GGNCC	1 cut(s)	125
SchI	GAGTC	2 cut(s)	33, 302
ScrFI	CCNGG	2 cut(s)	399, 773
SduI	GDGCHC	1 cut(s)	252
SetI	ASST	4 cut(s)	231, 354, 429, 631
SfaNI	GCATC	2 cut(s)	161, 691
SfcI	CTRYAG	3 cut(s)	33, 207, 422
SfuI	TTCGAA	1 cut(s)	734
SinI	GGWCC	1 cut(s)	125
Sse9I	AATT	5 cut(s)	28, 175, 392, 533, 696
SsiI	CCGC	3 cut(s)	69, 273, 748
SspMI	CTAG	2 cut(s)	116, 560
StyD4I	CCNGG	2 cut(s)	397, 771
StyI	CCWWGG	2 cut(s)	372, 474
TaaI	ACNGT	4 cut(s)	46, 91, 199, 301
TaqI	TCGA	2 cut(s)	303, 734
TasI	AATT	5 cut(s)	28, 175, 392, 533, 696
TfiI	GAWTC	3 cut(s)	77, 112, 434
TscAI	CASTG	2 cut(s)	49, 202
TseFI	GTSAC	1 cut(s)	262
TseI	GCWGC	2 cut(s)	23, 368
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	2 cut(s)	147, 596
TspRI	CASTG	2 cut(s)	49, 202
Van91I	CCANNNNNTGG	1 cut(s)	502
VpaK11BI	GGWCC	1 cut(s)	125
XagI	CCTNNNNNAGG	1 cut(s)	776
XapI	RAATTY	1 cut(s)	28
XceI	RCATGY	1 cut(s)	790
XcmI	CCANNNNNNNNNTGG	1 cut(s)	379
XspI	CTAG	2 cut(s)	116, 560
Zsp2I	ATGCAT	1 cut(s)	604

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.