pycom420g00560

YT521-B-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_420
OG0005296
Physical Location & Seq
Forward (+)
664091 .. 668177
4087 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1578 bp
ATGCATGTTTTATCACCAGTCATCTACAATGATAGTCCTTCTCTTCTGTTTCACTCTGGTTATGGCTTCAATCACGAAATTGCATATGGACAGTATTCACCAGTCGCTGGTCCTTTGCCTTCTGTAATGGTAGATGGCCAACTTTATTCTACACAACAGGTCCCTTTCTCTCCATCTTATTACCCCCAGCCATCTGAGTTGATGAGACCAGAAAGTAGTAGCACTGACAACATAGGTTATGGGCCAGGACCAGTTTACATGGTAAATTATAGATCATTCAGCGGAGATCTGTCTGGACATCTTGGTTCTAGTCCTTTAGCATCTCCAACAATTTATCCTCCACCAATGGGCATTCTTGGGTCATACGAACACAATGCAGGGCAGATTTCTCAACAACAGAGACCAATGCATGGATATGGATTGGTTTCAAGTTCCTTTGGTGGACGCTATCCTCAGGGTAGTTCTTACCAAAGCTCAAACTATGGTAGTGCTTCATATTCGTTTGGTAATGACCGGAACCGACTAAATGTTGACAAGACCAGAAGAAGAGAGAGGGACTGGGACTCAATTTCCGTCAATAATAATTCACATGATATATTCAATGACCGCAACAGAGGACCAAGGGCTTCACAGATGAAGGGAAAGAGTACTTCCGACCAGAGTTCTTCATCTAGTGTTAGGAAAATGGATCGATCTTCTTCTGGATTTAACCTTGATTCATTGAACCAGCTAGATTTTGTCACAGAATACAAGGATGCAAAATTCTTTATCATTAAGTCTTTCAGTGAGGACAACATTCACAAAAGTATTAAATACAATGTTTGGGCTAGCACGCCTCATGGAAACAAGAAACTTGATGCTGCTTATCATGAGGCAAAGAAGATAAAATGCAGCTGCCCAGTCTTCCTATTCTTTTCGGTTAATGCTAGCGGACAGTTTTGTGGGGTAGCTGAAATGGTTGGACCTGTAGATTTTGAGAAGGATGCTGATTACTGGCAGCAAGATAGGTGGAGTGGGCAATTTCCAGTTCAGTGGCATATTGTTAAGGATGTTCCTAACATCCGGTTCCGTCACATTCTACTTGAAAATAATGATAATAAGCCCGTCACGCACAGCCGAGATTGTCAGGAGGTGAATCTCAAACAAGGCATTGAGCTATTGAAAATTTTCAACGATTTTGATGCACGGACATCTATTATAGATGACTTTGAATTTTATGATGAGCGGGAAAAATCCTCGAAGCAAAGGAAAGTTAAACAAGAAGCTAGTTCGACTACGGATGCTTCTGATTCAGTTGGCATTGATTCTGTTAAGGAAATTTCTGATAGTTTTGATCACGCCCTGCAGTTGAAAGGAAGTAACGGCAAAGAAGTAGCAAAAACCGAGCATGACATTAGCTCTAAAACAGAAGCTGCTTCAGCAATCCTTGAACATGATTCCTCTATGGACCAAATATCTGATAGCTTATCTCAAGTATTGCAGTTGGAAGAGGGTGACAAAGAATTAGCACTGCCATCTGAAAGTAGTAATGATGGAGACGACAGCAAGTCGGTTGACAGGAAGGCAACAGGTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YTH

Protein Analysis

526

Amino Acids

58.49

Weight (kDa)

5.54

Isoelectric Point (pI)

56.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YTH PF04146 253 - 391 3.1e-51 YT521-B-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 107, 410
AccBSI CCGCTC 1 cut(s) 1225
AciI CCGC 4 cut(s) 282, 607, 930, 1225
AclWI GGATC 1 cut(s) 696
AcoI YGGCCR 1 cut(s) 136
AcsI RAATTY 4 cut(s) 761, 1164, 1211, 1317
AcuI CTGAAG 1 cut(s) 1401
AfaI GTAC 1 cut(s) 649
AfiI CCNNNNNNNGG 3 cut(s) 107, 347, 410
AhdI GACNNNNNGTC 1 cut(s) 1546
AjnI CCWGG 1 cut(s) 244
AluBI AGCT 9 cut(s) 474, 730, 894, 950, 1156, 1265, 1398, 1412, 1464
AluI AGCT 9 cut(s) 474, 730, 894, 950, 1156, 1265, 1398, 1412, 1464
Alw26I GTCTC 3 cut(s) 199, 394, 1530
AlwI GGATC 1 cut(s) 696
AlwNI CAGNNNCTG 2 cut(s) 107, 1412
AoxI GGCC 2 cut(s) 136, 242
ApeKI GCWGC 5 cut(s) 860, 891, 894, 997, 1412
ApoI RAATTY 4 cut(s) 761, 1164, 1211, 1317
Asp700I GAANNNNTTC 1 cut(s) 1166
AspS9I GGNCC 7 cut(s) 110, 160, 242, 248, 617, 962, 1447
AsuHPI GGTGA 4 cut(s) 6, 90, 1144, 1505
AsuNHI GCTAGC 2 cut(s) 827, 926
AvaII GGWCC 6 cut(s) 110, 160, 248, 617, 962, 1447
AxyI CCTNAGG 1 cut(s) 453
BalI TGGCCA 1 cut(s) 138
BbsI GAAGAC 1 cut(s) 895
BbvI GCAGC 5 cut(s) 847, 881, 903, 1009, 1399
BccI CCATC 5 cut(s) 128, 181, 199, 1522, 1526
BceAI ACGGC 1 cut(s) 1378
BcgI CGANNNNNNTGC 4 cut(s) 356, 390, 1163, 1197
BciT130I CCWGG 1 cut(s) 246
BclI TGATCA 1 cut(s) 1333
BcoDI GTCTC 3 cut(s) 199, 394, 1530
BfaI CTAG 6 cut(s) 309, 672, 731, 828, 927, 1266
BfmI CTRYAG 2 cut(s) 966, 1343
BglII AGATCT 1 cut(s) 286
BisI GCNGC 5 cut(s) 861, 892, 895, 998, 1413
BlsI GCNGC 5 cut(s) 862, 893, 896, 999, 1414
BmcAI AGTACT 1 cut(s) 649
Bme1390I CCNGG 1 cut(s) 246
Bme18I GGWCC 6 cut(s) 110, 160, 248, 617, 962, 1447
BmeRI GACNNNNNGTC 1 cut(s) 1546
BmgT120I GGNCC 7 cut(s) 110, 160, 242, 248, 617, 962, 1447
BmiI GGNNCC 3 cut(s) 162, 518, 1067
BmrFI CCNGG 1 cut(s) 246
BmrI ACTGGG 2 cut(s) 568, 893
BmsI GCATC 6 cut(s) 329, 745, 847, 973, 1171, 1270
BmtI GCTAGC 2 cut(s) 831, 930
BmuI ACTGGG 2 cut(s) 568, 893
BpiI GAAGAC 1 cut(s) 895
BpuEI CTTGAG 1 cut(s) 1455
Bsa29I ATCGAT 1 cut(s) 691
BsaI GGTCTC 2 cut(s) 199, 394
BsaJI CCNNGG 1 cut(s) 620
BsaWI WCCGGW 2 cut(s) 513, 1062
Bsc4I CCNNNNNNNGG 3 cut(s) 107, 347, 410
Bse1I ACTGG 7 cut(s) 17, 101, 251, 563, 899, 998, 1025
Bse21I CCTNAGG 1 cut(s) 453
BseBI CCWGG 1 cut(s) 246
BseCI ATCGAT 1 cut(s) 691
BseDI CCNNGG 1 cut(s) 620
BseGI GGATG 5 cut(s) 760, 988, 1054, 1059, 1285
BseLI CCNNNNNNNGG 3 cut(s) 107, 347, 410
BseMII CTCAG 2 cut(s) 186, 467
BseNI ACTGG 7 cut(s) 17, 101, 251, 563, 899, 998, 1025
BseXI GCAGC 5 cut(s) 847, 881, 903, 1009, 1399
BseYI CCCAGC 1 cut(s) 186
BshFI GGCC 2 cut(s) 138, 244
BshVI ATCGAT 1 cut(s) 691
BsiSI CCGG 2 cut(s) 514, 1063
BslFI GGGAC 3 cut(s) 146, 569, 575
BslI CCNNNNNNNGG 3 cut(s) 107, 347, 410
BsmAI GTCTC 3 cut(s) 199, 394, 1530
BsmBI CGTCTC 1 cut(s) 1530
BsmFI GGGAC 3 cut(s) 146, 569, 575
BsmI GAATGC 1 cut(s) 351
BsnI GGCC 2 cut(s) 138, 244
Bso31I GGTCTC 2 cut(s) 199, 394
Bsp143I GATC 5 cut(s) 272, 286, 688, 692, 1333
BspACI CCGC 4 cut(s) 282, 607, 930, 1225
BspANI GGCC 2 cut(s) 138, 244
BspCNI CTCAG 2 cut(s) 187, 466
BspDI ATCGAT 1 cut(s) 691
BspHI TCATGA 1 cut(s) 868
BspLI GGNNCC 3 cut(s) 162, 518, 1067
BspMAI CTGCAG 1 cut(s) 1347
BspOI GCTAGC 2 cut(s) 831, 930
BspPI GGATC 1 cut(s) 696
BspTNI GGTCTC 2 cut(s) 199, 394
BsrBI CCGCTC 1 cut(s) 1225
BsrI ACTGG 7 cut(s) 17, 101, 251, 563, 899, 998, 1025
BssECI CCNNGG 1 cut(s) 620
BssMI GATC 5 cut(s) 272, 286, 688, 692, 1333
BssT1I CCWWGG 1 cut(s) 620
Bst2UI CCWGG 1 cut(s) 246
Bst4CI ACNGT 2 cut(s) 93, 936
Bst6I CTCTTC 3 cut(s) 48, 541, 1482
BstC8I GCNNGC 3 cut(s) 829, 833, 928
BstDEI CTNAG 2 cut(s) 195, 453
BstF5I GGATG 5 cut(s) 760, 988, 1054, 1059, 1285
BstKTI GATC 5 cut(s) 275, 289, 691, 695, 1336
BstMAI GTCTC 3 cut(s) 199, 394, 1530
BstMBI GATC 5 cut(s) 272, 286, 688, 692, 1333
BstMWI GCNNNNNNNGC 2 cut(s) 1108, 1418
BstNI CCWGG 1 cut(s) 246
BstNSI RCATGY 1 cut(s) 8
BstSCI CCNGG 1 cut(s) 244
BstSFI CTRYAG 2 cut(s) 966, 1343
BstV1I GCAGC 5 cut(s) 847, 881, 903, 1009, 1399
BstV2I GAAGAC 1 cut(s) 895
BstX2I RGATCY 1 cut(s) 286
BstXI CCANNNNNNTGG 1 cut(s) 1032
BstYI RGATCY 1 cut(s) 286
Bsu15I ATCGAT 1 cut(s) 691
Bsu36I CCTNAGG 1 cut(s) 453
BsuRI GGCC 2 cut(s) 138, 244
BsuTUI ATCGAT 1 cut(s) 691
BtsCI GGATG 5 cut(s) 760, 988, 1054, 1059, 1285
BtsI GCAGTG 1 cut(s) 1508
BtsIMutI CAGTG 4 cut(s) 222, 790, 1037, 1508
Cac8I GCNNGC 3 cut(s) 829, 833, 928
CaiI CAGNNNCTG 2 cut(s) 107, 1412
CciI TCATGA 1 cut(s) 868
Cfr13I GGNCC 7 cut(s) 110, 160, 242, 248, 617, 962, 1447
ClaI ATCGAT 1 cut(s) 691
CseI GACGC 1 cut(s) 453
Csp6I GTAC 1 cut(s) 648
CspCI CAANNNNNGTGG 2 cut(s) 989, 1024
CviAII CATG 8 cut(s) 5, 259, 410, 590, 839, 869, 1388, 1433
CviQI GTAC 1 cut(s) 648
DdeI CTNAG 2 cut(s) 195, 453
DpnI GATC 5 cut(s) 274, 288, 690, 694, 1335
DpnII GATC 5 cut(s) 272, 286, 688, 692, 1333
DriI GACNNNNNGTC 1 cut(s) 1546
EaeI YGGCCR 1 cut(s) 136
Eam1104I CTCTTC 3 cut(s) 48, 541, 1482
Eam1105I GACNNNNNGTC 1 cut(s) 1546
EarI CTCTTC 3 cut(s) 48, 541, 1482
Eco130I CCWWGG 1 cut(s) 620
Eco31I GGTCTC 2 cut(s) 199, 394
Eco47I GGWCC 6 cut(s) 110, 160, 248, 617, 962, 1447
Eco57I CTGAAG 1 cut(s) 1401
Eco81I CCTNAGG 1 cut(s) 453
EcoO109I RGGNCCY 1 cut(s) 160
EcoRII CCWGG 1 cut(s) 244
EcoT14I CCWWGG 1 cut(s) 620
EcoT22I ATGCAT 2 cut(s) 6, 411
ErhI CCWWGG 1 cut(s) 620
Esp3I CGTCTC 1 cut(s) 1530
FaeI CATG 8 cut(s) 8, 262, 413, 593, 842, 872, 1391, 1436
FaqI GGGAC 3 cut(s) 146, 569, 575
FatI CATG 8 cut(s) 4, 258, 409, 589, 838, 868, 1387, 1432
FauI CCCGC 1 cut(s) 1218
FauNDI CATATG 1 cut(s) 85
FbaI TGATCA 1 cut(s) 1333
Fnu4HI GCNGC 5 cut(s) 861, 892, 895, 998, 1413
FokI GGATG 5 cut(s) 767, 995, 1046, 1061, 1292
Fsp4HI GCNGC 5 cut(s) 861, 892, 895, 998, 1413
FspBI CTAG 6 cut(s) 309, 672, 731, 828, 927, 1266
GluI GCNGC 5 cut(s) 861, 892, 895, 998, 1413
GsaI CCCAGC 1 cut(s) 190
HaeIII GGCC 2 cut(s) 138, 244
HapII CCGG 2 cut(s) 514, 1063
HgaI GACGC 1 cut(s) 453
Hin1II CATG 8 cut(s) 8, 262, 413, 593, 842, 872, 1391, 1436
HincII GTYRAC 2 cut(s) 532, 1555
HindII GTYRAC 2 cut(s) 532, 1555
HinfI GANTC 6 cut(s) 563, 716, 1135, 1289, 1304, 1436
HpaII CCGG 2 cut(s) 514, 1063
HphI GGTGA 4 cut(s) 6, 90, 1144, 1505
Hpy166II GTNNAC 4 cut(s) 256, 443, 532, 1555
Hpy188I TCNGA 6 cut(s) 196, 655, 1288, 1324, 1459, 1519
Hpy188III TCNNGA 5 cut(s) 74, 294, 702, 869, 1127
Hpy8I GTNNAC 4 cut(s) 256, 443, 532, 1555
HpyAV CCTTC 5 cut(s) 48, 129, 631, 973, 1555
HpyCH4III ACNGT 2 cut(s) 93, 936
HpyCH4V TGCA 9 cut(s) 4, 83, 377, 409, 758, 891, 1184, 1345, 1480
HpyF10VI GCNNNNNNNGC 2 cut(s) 1108, 1418
HpyF3I CTNAG 2 cut(s) 195, 453
Hsp92II CATG 8 cut(s) 8, 262, 413, 593, 842, 872, 1391, 1436
Ksp22I TGATCA 1 cut(s) 1333
Kzo9I GATC 5 cut(s) 272, 286, 688, 692, 1333
Lsp1109I GCAGC 5 cut(s) 847, 881, 903, 1009, 1399
LweI GCATC 6 cut(s) 329, 745, 847, 973, 1171, 1270
MaeI CTAG 6 cut(s) 309, 672, 731, 828, 927, 1266
MaeIII GTNAC 5 cut(s) 739, 1070, 1105, 1358, 1493
MalI GATC 5 cut(s) 274, 288, 690, 694, 1335
MbiI CCGCTC 1 cut(s) 1225
MboI GATC 5 cut(s) 272, 286, 688, 692, 1333
MboII GAAGA 9 cut(s) 35, 555, 558, 657, 687, 690, 892, 895, 1499
MflI RGATCY 1 cut(s) 286
MlsI TGGCCA 1 cut(s) 138
MluNI TGGCCA 1 cut(s) 138
MlyI GAGTC 1 cut(s) 557
MmeI TCCRAC 4 cut(s) 350, 678, 940, 1464
Mox20I TGGCCA 1 cut(s) 138
Mph1103I ATGCAT 2 cut(s) 6, 411
MroXI GAANNNNTTC 1 cut(s) 1166
MscI TGGCCA 1 cut(s) 138
MseI TTAA 7 cut(s) 708, 774, 810, 921, 1044, 1254, 1311
MslI CAYNNNNRTG 1 cut(s) 414
Msp20I TGGCCA 1 cut(s) 138
MspA1I CMGCKG 2 cut(s) 282, 894
MspI CCGG 2 cut(s) 514, 1063
MspR9I CCNGG 1 cut(s) 246
Mva1269I GAATGC 1 cut(s) 351
MvaI CCWGG 1 cut(s) 246
MwoI GCNNNNNNNGC 2 cut(s) 1108, 1418
NdeI CATATG 1 cut(s) 85
NdeII GATC 5 cut(s) 272, 286, 688, 692, 1333
NheI GCTAGC 2 cut(s) 827, 926
NlaIII CATG 8 cut(s) 8, 262, 413, 593, 842, 872, 1391, 1436
NlaIV GGNNCC 3 cut(s) 162, 518, 1067
NmeAIII GCCGAG 1 cut(s) 1142
NmuCI GTSAC 4 cut(s) 739, 1070, 1105, 1493
NsiI ATGCAT 2 cut(s) 6, 411
NspI RCATGY 1 cut(s) 8
PagI TCATGA 1 cut(s) 868
PctI GAATGC 1 cut(s) 351
PdmI GAANNNNTTC 1 cut(s) 1166
PfeI GAWTC 5 cut(s) 716, 1135, 1289, 1304, 1436
PflMI CCANNNNNTGG 2 cut(s) 107, 410
PkrI GCNGC 5 cut(s) 862, 893, 896, 999, 1414
PleI GAGTC 1 cut(s) 557
PpsI GAGTC 1 cut(s) 557
PpuMI RGGWCCY 1 cut(s) 160
Psp5II RGGWCCY 1 cut(s) 160
Psp6I CCWGG 1 cut(s) 244
PspFI CCCAGC 1 cut(s) 186
PspGI CCWGG 1 cut(s) 244
PspN4I GGNNCC 3 cut(s) 162, 518, 1067
PspPI GGNCC 7 cut(s) 110, 160, 242, 248, 617, 962, 1447
PspPPI RGGWCCY 1 cut(s) 160
PstI CTGCAG 1 cut(s) 1347
PstNI CAGNNNCTG 2 cut(s) 107, 1412
PsuI RGATCY 1 cut(s) 286
PvuII CAGCTG 1 cut(s) 894
RsaI GTAC 1 cut(s) 649
RsaNI GTAC 1 cut(s) 648
RseI CAYNNNNRTG 1 cut(s) 414
SaqAI TTAA 7 cut(s) 708, 774, 810, 921, 1044, 1254, 1311
SatI GCNGC 5 cut(s) 861, 892, 895, 998, 1413
Sau3AI GATC 5 cut(s) 272, 286, 688, 692, 1333
Sau96I GGNCC 7 cut(s) 110, 160, 242, 248, 617, 962, 1447
ScaI AGTACT 1 cut(s) 649
SchI GAGTC 1 cut(s) 557
ScrFI CCNGG 1 cut(s) 246
SfaNI GCATC 6 cut(s) 329, 745, 847, 973, 1171, 1270
SfcI CTRYAG 2 cut(s) 966, 1343
SinI GGWCC 6 cut(s) 110, 160, 248, 617, 962, 1447
SmiMI CAYNNNNRTG 1 cut(s) 414
SmlI CTYRAG 1 cut(s) 1470
SmoI CTYRAG 1 cut(s) 1470
SsiI CCGC 4 cut(s) 282, 607, 930, 1225
SspMI CTAG 6 cut(s) 309, 672, 731, 828, 927, 1266
StyD4I CCNGG 1 cut(s) 244
StyI CCWWGG 1 cut(s) 620
TaaI ACNGT 2 cut(s) 93, 936
TaqI TCGA 3 cut(s) 691, 1238, 1271
TatI WGTACW 1 cut(s) 647
TfiI GAWTC 5 cut(s) 716, 1135, 1289, 1304, 1436
Tru1I TTAA 7 cut(s) 708, 774, 810, 921, 1044, 1254, 1311
Tru9I TTAA 7 cut(s) 708, 774, 810, 921, 1044, 1254, 1311
TscAI CASTG 4 cut(s) 229, 790, 1037, 1515
TseFI GTSAC 4 cut(s) 739, 1070, 1105, 1493
TseI GCWGC 5 cut(s) 860, 891, 894, 997, 1412
Tsp45I GTSAC 4 cut(s) 739, 1070, 1105, 1493
TspDTI ATGAA 4 cut(s) 483, 650, 657, 708
TspGWI ACGGA 4 cut(s) 562, 1058, 1201, 1292
TspRI CASTG 4 cut(s) 229, 790, 1037, 1515
Van91I CCANNNNNTGG 2 cut(s) 107, 410
VpaK11BI GGWCC 6 cut(s) 110, 160, 248, 617, 962, 1447
XapI RAATTY 4 cut(s) 761, 1164, 1211, 1317
XceI RCATGY 1 cut(s) 8
XmnI GAANNNNTTC 1 cut(s) 1166
XspI CTAG 6 cut(s) 309, 672, 731, 828, 927, 1266
ZrmI AGTACT 1 cut(s) 649
Zsp2I ATGCAT 2 cut(s) 6, 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.