RchiOBHm_Chr7g0178511

WUSCHEL-related homeobox

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0015046
Physical Location & Seq
Reverse (-)
1164626 .. 1167718
3093 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1161 bp
ATGTGGATGATGGGTTACAACGATGGTGGTGACTTCAACATGATTCCGGATTCAGCCTTCAACGGTCGGAAGCTTCGGCCTCTCGTTCCTAGGCCTCTGTCATCTCCTCATAACAACAACAACAACAACACTTCAACAAGTACACATGCTCCACCTTGTTTCAGTCGAATTCATGCTGCGTCTGATTTCTTAGCACAATATCACCAGCTGGGTGAACAAAGAGGGATGAGAGAGTTCAATACGGTGCCGCAGGTTGTGGTGAGCTCGAGATGGAACCCCACGCCGGAACAGTTGAGGGCACTAGAGGAGTTATATCGACGAGGGACTCGAACCCCATCGGCTGAGCAGATTCAGCAAATCACTGCTCAGCTTAGAAGGTATGGAAAGATAGAGGGCAAGAACGTGTTCTATTGGTTCCAAAACCACAAGGCAAGAGAGAGACAGAAACGCCGTCGCCAGATGGAATCTCACGACGACCTTCAACTCATGTGTTCAGATCACCAAAAGAAGGAATCATTAGGCGGGGCAAGTAGGACAGTGTATGAAGTTGAAGAGACCAAGAATTGGGCACCCTCTGCAAACTGCATGACTACTAGTCTCCAAGATCAGCTTCATCATCAACAGGAAACAGTAAAAGCAGGAGCAGAGAGCAGGACGGAAGCATGGGTCCAATTCGGTGAGGAAGAATTGCAGCAACTTCAACAAGAGCAAAGAAGGAATTCCATGACTGTAGAAAAGAATGCCAGGTGGCAGATGATGCAGTTGTCTTGTCCTCCTCCTCCTCGTCTTCATGACCTCACCCACCTCATAAACGCCCCCACTTGTACCAGAACGACAGTAAGAACAATGGAGATGGACCAAAAGCAGCTCATTAATAACCGTAATAATAAGACTAGTCCTCCTCATGATCTCAGCATCTTTATAGCTCCCTACAGGTCTGGCGCTGCCCTTAACGGTCGCCATCTCCAACAAAACCAACACCGTAACGAAGAAGAAGATATTTCACGTGGAGATCAGTCTCAAACCCTCCAGCTATTTCCGCTTCGGAGTAGTACTTGCGGCGAAAAAGATCATCTTACAACCGAGAAATCCTTGCTAAACCCTAGTTTCGGCACTGGCCCTAATTACCAGTTTTTTGAGTTCCTCCCATTGAAGAACTGA

Protein Analysis

386

Amino Acids

44.66

Weight (kDa)

8.85

Isoelectric Point (pI)

63.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 89 - 148 1.8e-15 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015046)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18010
fragaria_vesca FvH4_5g17270
malus_domestica MD06G1231300.v1.1 MD14G1235800.v1.1
prunus_persica Prupe.5G232600_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0178511
rosa_laevigata RLG00000005441
rosa_multiflora Rmu_sc0002421.1_g000001 Rmu_sc0016060.1_g000002
rosa_roxburghii Rroxscaffold_3G00274850
rosa_rugosa Rorug06G0417700
rosa_samantha Rh7AG016200 Rh7BG015700 Rh7CG016400 Rh7DG016300
rosa_wichuraiana Rw7G001280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 241
AccB1I GGYRCC 2 cut(s) 244, 568
AccB7I CCANNNNNTGG 1 cut(s) 564
AccIII TCCGGA 1 cut(s) 46
AciI CCGC 4 cut(s) 248, 522, 1040, 1059
AcsI RAATTY 2 cut(s) 168, 718
AcvI CACGTG 1 cut(s) 1007
AfaI GTAC 3 cut(s) 142, 826, 1054
AfiI CCNNNNNNNGG 4 cut(s) 283, 508, 564, 1109
AflIII ACRYGT 1 cut(s) 402
AgsI TTSAA 8 cut(s) 37, 61, 135, 238, 482, 551, 701, 1153
AhdI GACNNNNNGTC 1 cut(s) 594
AhlI ACTAGT 2 cut(s) 593, 893
AjnI CCWGG 1 cut(s) 743
AjuI GAANNNNNNNTTGG 2 cut(s) 594, 626
AluBI AGCT 8 cut(s) 73, 208, 264, 370, 610, 868, 926, 1033
AluI AGCT 8 cut(s) 73, 208, 264, 370, 610, 868, 926, 1033
Alw21I GWGCWC 1 cut(s) 266
Alw26I GTCTC 4 cut(s) 433, 548, 602, 1023
Ama87I CYCGRG 1 cut(s) 265
Aor13HI TCCGGA 1 cut(s) 46
AoxI GGCC 3 cut(s) 77, 92, 1117
ApeKI GCWGC 4 cut(s) 176, 691, 865, 944
ApoI RAATTY 2 cut(s) 168, 718
AseI ATTAAT 1 cut(s) 873
Asp700I GAANNNNTTC 2 cut(s) 404, 718
AspA2I CCTAGG 1 cut(s) 89
AspLEI GCGC 1 cut(s) 944
AspS9I GGNCC 3 cut(s) 667, 856, 1118
AsuHPI GGTGA 7 cut(s) 41, 194, 224, 271, 491, 689, 790
AvaI CYCGRG 1 cut(s) 265
AvaII GGWCC 2 cut(s) 667, 856
AvrII CCTAGG 1 cut(s) 89
BaeGI GKGCMC 2 cut(s) 301, 571
BanI GGYRCC 2 cut(s) 244, 568
BanII GRGCYC 1 cut(s) 266
BbrPI CACGTG 1 cut(s) 1007
BbsI GAAGAC 1 cut(s) 779
Bbv12I GWGCWC 1 cut(s) 266
BbvI GCAGC 4 cut(s) 163, 703, 877, 931
BccI CCATC 7 cut(s) 4, 17, 264, 343, 454, 847, 969
BceAI ACGGC 1 cut(s) 435
BciT130I CCWGG 1 cut(s) 745
BcoDI GTCTC 4 cut(s) 433, 548, 602, 1023
BcuI ACTAGT 2 cut(s) 593, 893
BfaI CTAG 5 cut(s) 90, 302, 594, 894, 1104
BfmI CTRYAG 2 cut(s) 729, 931
BfoI RGCGCY 1 cut(s) 945
BfuAI ACCTGC 1 cut(s) 241
BisI GCNGC 6 cut(s) 177, 248, 692, 866, 945, 1060
BlnI CCTAGG 1 cut(s) 89
BlpI GCTNAGC 2 cut(s) 342, 366
BlsI GCNGC 6 cut(s) 178, 249, 693, 867, 946, 1061
BmcAI AGTACT 1 cut(s) 1054
Bme1390I CCNGG 1 cut(s) 745
Bme18I GGWCC 2 cut(s) 667, 856
BmeRI GACNNNNNGTC 1 cut(s) 594
BmeT110I CYCGRG 1 cut(s) 265
BmgT120I GGNCC 3 cut(s) 667, 856, 1118
BmiI GGNNCC 5 cut(s) 246, 275, 416, 570, 668
BmrFI CCNGG 1 cut(s) 745
BmsI GCATC 2 cut(s) 747, 924
BpiI GAAGAC 1 cut(s) 779
BpmI CTGGAG 1 cut(s) 1013
Bpu1102I GCTNAGC 2 cut(s) 342, 366
BsaAI YACGTR 1 cut(s) 1007
BsaI GGTCTC 1 cut(s) 548
BsaJI CCNNGG 1 cut(s) 89
BsaWI WCCGGW 1 cut(s) 46
BsaXI ACNNNNNCTCC 4 cut(s) 133, 163, 883, 913
Bsc4I CCNNNNNNNGG 4 cut(s) 283, 508, 564, 1109
Bse1I ACTGG 2 cut(s) 1120, 1129
BseAI TCCGGA 1 cut(s) 46
BseBI CCWGG 1 cut(s) 745
BseDI CCNNGG 1 cut(s) 89
BseGI GGATG 2 cut(s) 12, 231
BseLI CCNNNNNNNGG 4 cut(s) 283, 508, 564, 1109
BseMII CTCAG 3 cut(s) 333, 380, 925
BseNI ACTGG 2 cut(s) 1120, 1129
BseRI GAGGAG 6 cut(s) 96, 320, 765, 768, 771, 891
BseSI GKGCMC 2 cut(s) 301, 571
BseXI GCAGC 4 cut(s) 163, 703, 877, 931
BseYI CCCAGC 1 cut(s) 208
Bsh1285I CGRYCG 2 cut(s) 67, 958
BshFI GGCC 3 cut(s) 79, 94, 1119
BshNI GGYRCC 2 cut(s) 244, 568
BsiEI CGRYCG 2 cut(s) 67, 958
BsiHKAI GWGCWC 1 cut(s) 266
BsiHKCI CYCGRG 1 cut(s) 265
BsiSI CCGG 2 cut(s) 47, 284
BslFI GGGAC 1 cut(s) 337
BslI CCNNNNNNNGG 4 cut(s) 283, 508, 564, 1109
BsmAI GTCTC 4 cut(s) 433, 548, 602, 1023
BsmFI GGGAC 1 cut(s) 337
BsmI GAATGC 1 cut(s) 745
BsnI GGCC 3 cut(s) 79, 94, 1119
Bso31I GGTCTC 1 cut(s) 548
BsoBI CYCGRG 1 cut(s) 265
Bsp1286I GDGCHC 3 cut(s) 266, 301, 571
Bsp13I TCCGGA 1 cut(s) 46
Bsp143I GATC 5 cut(s) 496, 604, 907, 1012, 1069
Bsp1720I GCTNAGC 2 cut(s) 342, 366
BspACI CCGC 4 cut(s) 248, 522, 1040, 1059
BspANI GGCC 3 cut(s) 79, 94, 1119
BspCNI CTCAG 3 cut(s) 334, 379, 924
BspEI TCCGGA 1 cut(s) 46
BspHI TCATGA 2 cut(s) 790, 904
BspLI GGNNCC 5 cut(s) 246, 275, 416, 570, 668
BspMI ACCTGC 1 cut(s) 241
BspT107I GGYRCC 2 cut(s) 244, 568
BspTNI GGTCTC 1 cut(s) 548
BsrI ACTGG 2 cut(s) 1120, 1129
BssECI CCNNGG 1 cut(s) 89
BssMI GATC 5 cut(s) 496, 604, 907, 1012, 1069
BssT1I CCWWGG 1 cut(s) 89
Bst2UI CCWGG 1 cut(s) 745
Bst6I CTCTTC 1 cut(s) 546
BstAPI GCANNNNNTGC 2 cut(s) 575, 757
BstBAI YACGTR 1 cut(s) 1007
BstDEI CTNAG 5 cut(s) 190, 342, 366, 371, 911
BstF5I GGATG 2 cut(s) 12, 231
BstH2I RGCGCY 1 cut(s) 945
BstHHI GCGC 1 cut(s) 944
BstKTI GATC 5 cut(s) 499, 607, 910, 1015, 1072
BstMAI GTCTC 4 cut(s) 433, 548, 602, 1023
BstMBI GATC 5 cut(s) 496, 604, 907, 1012, 1069
BstMCI CGRYCG 2 cut(s) 67, 958
BstMWI GCNNNNNNNGC 4 cut(s) 352, 575, 757, 1039
BstNI CCWGG 1 cut(s) 745
BstNSI RCATGY 1 cut(s) 149
BstSCI CCNGG 1 cut(s) 743
BstSFI CTRYAG 2 cut(s) 729, 931
BstSLI GKGCMC 2 cut(s) 301, 571
BstV1I GCAGC 4 cut(s) 163, 703, 877, 931
BstV2I GAAGAC 1 cut(s) 779
BsuRI GGCC 3 cut(s) 79, 94, 1119
BtsCI GGATG 2 cut(s) 12, 231
BtsI GCAGTG 1 cut(s) 360
BtsIMutI CAGTG 3 cut(s) 360, 543, 1113
BveI ACCTGC 1 cut(s) 241
CciI TCATGA 2 cut(s) 790, 904
CfoI GCGC 1 cut(s) 944
Cfr13I GGNCC 3 cut(s) 667, 856, 1118
CseI GACGC 1 cut(s) 168
Csp6I GTAC 3 cut(s) 141, 825, 1053
CspCI CAANNNNNGTGG 2 cut(s) 7, 42
CviAII CATG 9 cut(s) 40, 146, 173, 487, 586, 663, 724, 791, 905
CviQI GTAC 3 cut(s) 141, 825, 1053
DdeI CTNAG 5 cut(s) 190, 342, 366, 371, 911
DpnI GATC 5 cut(s) 498, 606, 909, 1014, 1071
DpnII GATC 5 cut(s) 496, 604, 907, 1012, 1069
DriI GACNNNNNGTC 1 cut(s) 594
Eam1104I CTCTTC 1 cut(s) 546
Eam1105I GACNNNNNGTC 1 cut(s) 594
EarI CTCTTC 1 cut(s) 546
Ecl136II GAGCTC 1 cut(s) 264
Eco130I CCWWGG 1 cut(s) 89
Eco147I AGGCCT 1 cut(s) 94
Eco24I GRGCYC 1 cut(s) 266
Eco31I GGTCTC 1 cut(s) 548
Eco47I GGWCC 2 cut(s) 667, 856
Eco53kI GAGCTC 1 cut(s) 264
Eco72I CACGTG 1 cut(s) 1007
Eco88I CYCGRG 1 cut(s) 265
EcoICRI GAGCTC 1 cut(s) 264
EcoRI GAATTC 2 cut(s) 168, 718
EcoRII CCWGG 1 cut(s) 743
EcoT14I CCWWGG 1 cut(s) 89
EcoT38I GRGCYC 1 cut(s) 266
ErhI CCWWGG 1 cut(s) 89
FaeI CATG 9 cut(s) 43, 149, 176, 490, 589, 666, 727, 794, 908
FalI AAGNNNNNCTT 4 cut(s) 594, 626, 1059, 1091
FaqI GGGAC 1 cut(s) 337
FatI CATG 9 cut(s) 39, 145, 172, 486, 585, 662, 723, 790, 904
FauI CCCGC 1 cut(s) 515
Fnu4HI GCNGC 6 cut(s) 177, 248, 692, 866, 945, 1060
FokI GGATG 2 cut(s) 19, 238
FriOI GRGCYC 1 cut(s) 266
Fsp4HI GCNGC 6 cut(s) 177, 248, 692, 866, 945, 1060
FspBI CTAG 5 cut(s) 90, 302, 594, 894, 1104
GlaI GCGC 1 cut(s) 943
GluI GCNGC 6 cut(s) 177, 248, 692, 866, 945, 1060
GsaI CCCAGC 1 cut(s) 212
GsuI CTGGAG 1 cut(s) 1013
HaeII RGCGCY 1 cut(s) 945
HaeIII GGCC 3 cut(s) 79, 94, 1119
HapII CCGG 2 cut(s) 47, 284
HgaI GACGC 1 cut(s) 168
HhaI GCGC 1 cut(s) 944
Hin1II CATG 9 cut(s) 43, 149, 176, 490, 589, 666, 727, 794, 908
Hin6I GCGC 1 cut(s) 942
HinP1I GCGC 1 cut(s) 942
HindIII AAGCTT 1 cut(s) 71
HinfI GANTC 6 cut(s) 43, 50, 325, 349, 464, 512
HpaII CCGG 2 cut(s) 47, 284
HphI GGTGA 7 cut(s) 41, 194, 224, 271, 491, 689, 790
Hpy166II GTNNAC 2 cut(s) 143, 215
Hpy188I TCNGA 4 cut(s) 69, 184, 496, 1047
Hpy188III TCNNGA 5 cut(s) 47, 267, 470, 791, 905
Hpy8I GTNNAC 2 cut(s) 143, 215
Hpy99I CGWCG 3 cut(s) 321, 456, 476
HpyAV CCTTC 5 cut(s) 67, 369, 488, 502, 708
HpyCH4IV ACGT 2 cut(s) 402, 1006
HpyCH4V TGCA 4 cut(s) 578, 585, 691, 760
HpyF10VI GCNNNNNNNGC 4 cut(s) 352, 575, 757, 1039
HpyF3I CTNAG 5 cut(s) 190, 342, 366, 371, 911
HpySE526I ACGT 2 cut(s) 402, 1006
Hsp92II CATG 9 cut(s) 43, 149, 176, 490, 589, 666, 727, 794, 908
HspAI GCGC 1 cut(s) 942
Kpn2I TCCGGA 1 cut(s) 46
Kzo9I GATC 5 cut(s) 496, 604, 907, 1012, 1069
LmnI GCTCC 3 cut(s) 154, 641, 931
Lsp1109I GCAGC 4 cut(s) 163, 703, 877, 931
LweI GCATC 2 cut(s) 747, 924
MaeI CTAG 5 cut(s) 90, 302, 594, 894, 1104
MaeII ACGT 2 cut(s) 402, 1006
MaeIII GTNAC 3 cut(s) 14, 29, 983
MalI GATC 5 cut(s) 498, 606, 909, 1014, 1071
MboI GATC 5 cut(s) 496, 604, 907, 1012, 1069
MboII GAAGA 6 cut(s) 563, 695, 779, 1001, 1004, 1007
MhlI GDGCHC 3 cut(s) 266, 301, 571
MluCI AATT 6 cut(s) 168, 562, 671, 686, 718, 1123
MlyI GAGTC 1 cut(s) 319
MmeI TCCRAC 2 cut(s) 47, 991
MroI TCCGGA 1 cut(s) 46
MroXI GAANNNNTTC 2 cut(s) 404, 718
MseI TTAA 2 cut(s) 873, 951
MspA1I CMGCKG 1 cut(s) 208
MspI CCGG 2 cut(s) 47, 284
MspR9I CCNGG 1 cut(s) 745
Mva1269I GAATGC 1 cut(s) 745
MvaI CCWGG 1 cut(s) 745
MwoI GCNNNNNNNGC 4 cut(s) 352, 575, 757, 1039
NdeII GATC 5 cut(s) 496, 604, 907, 1012, 1069
NlaIII CATG 9 cut(s) 43, 149, 176, 490, 589, 666, 727, 794, 908
NlaIV GGNNCC 5 cut(s) 246, 275, 416, 570, 668
NmuCI GTSAC 1 cut(s) 29
NspI RCATGY 1 cut(s) 149
PaeR7I CTCGAG 1 cut(s) 265
PagI TCATGA 2 cut(s) 790, 904
PceI AGGCCT 1 cut(s) 94
PcsI WCGNNNNNNNCGW 1 cut(s) 325
PctI GAATGC 1 cut(s) 745
PdmI GAANNNNTTC 2 cut(s) 404, 718
PfeI GAWTC 5 cut(s) 43, 50, 349, 464, 512
PflMI CCANNNNNTGG 1 cut(s) 564
PkrI GCNGC 6 cut(s) 178, 249, 693, 867, 946, 1061
PleI GAGTC 1 cut(s) 319
PmaCI CACGTG 1 cut(s) 1007
PmlI CACGTG 1 cut(s) 1007
PpsI GAGTC 1 cut(s) 319
Ppu21I YACGTR 1 cut(s) 1007
PshBI ATTAAT 1 cut(s) 873
Psp124BI GAGCTC 1 cut(s) 266
Psp6I CCWGG 1 cut(s) 743
PspCI CACGTG 1 cut(s) 1007
PspFI CCCAGC 1 cut(s) 208
PspGI CCWGG 1 cut(s) 743
PspN4I GGNNCC 5 cut(s) 246, 275, 416, 570, 668
PspPI GGNCC 3 cut(s) 667, 856, 1118
PvuII CAGCTG 1 cut(s) 208
RsaI GTAC 3 cut(s) 142, 826, 1054
RsaNI GTAC 3 cut(s) 141, 825, 1053
SacI GAGCTC 1 cut(s) 266
SaqAI TTAA 2 cut(s) 873, 951
SatI GCNGC 6 cut(s) 177, 248, 692, 866, 945, 1060
Sau3AI GATC 5 cut(s) 496, 604, 907, 1012, 1069
Sau96I GGNCC 3 cut(s) 667, 856, 1118
ScaI AGTACT 1 cut(s) 1054
SchI GAGTC 1 cut(s) 319
ScrFI CCNGG 1 cut(s) 745
SduI GDGCHC 3 cut(s) 266, 301, 571
SfaNI GCATC 2 cut(s) 747, 924
SfcI CTRYAG 2 cut(s) 729, 931
Sfr274I CTCGAG 1 cut(s) 265
SinI GGWCC 2 cut(s) 667, 856
SlaI CTCGAG 1 cut(s) 265
SmlI CTYRAG 1 cut(s) 265
SmoI CTYRAG 1 cut(s) 265
SpeI ACTAGT 2 cut(s) 593, 893
Sse9I AATT 6 cut(s) 168, 562, 671, 686, 718, 1123
SseBI AGGCCT 1 cut(s) 94
SsiI CCGC 4 cut(s) 248, 522, 1040, 1059
SspMI CTAG 5 cut(s) 90, 302, 594, 894, 1104
SstI GAGCTC 1 cut(s) 266
StuI AGGCCT 1 cut(s) 94
StyD4I CCNGG 1 cut(s) 743
StyI CCWWGG 1 cut(s) 89
TaiI ACGT 2 cut(s) 405, 1009
TaqI TCGA 4 cut(s) 166, 266, 316, 328
TasI AATT 6 cut(s) 168, 562, 671, 686, 718, 1123
TatI WGTACW 2 cut(s) 140, 1052
TauI GCSGC 2 cut(s) 250, 1062
TfiI GAWTC 5 cut(s) 43, 50, 349, 464, 512
Tru1I TTAA 2 cut(s) 873, 951
Tru9I TTAA 2 cut(s) 873, 951
TscAI CASTG 3 cut(s) 367, 543, 1120
TseFI GTSAC 1 cut(s) 29
TseI GCWGC 4 cut(s) 176, 691, 865, 944
Tsp45I GTSAC 1 cut(s) 29
TspDTI ATGAA 4 cut(s) 161, 558, 602, 779
TspGWI ACGGA 1 cut(s) 671
TspRI CASTG 3 cut(s) 367, 543, 1120
Van91I CCANNNNNTGG 1 cut(s) 564
VpaK11BI GGWCC 2 cut(s) 667, 856
VspI ATTAAT 1 cut(s) 873
XapI RAATTY 2 cut(s) 168, 718
XceI RCATGY 1 cut(s) 149
XhoI CTCGAG 1 cut(s) 265
XmaJI CCTAGG 1 cut(s) 89
XmnI GAANNNNTTC 2 cut(s) 404, 718
XspI CTAG 5 cut(s) 90, 302, 594, 894, 1104
ZrmI AGTACT 1 cut(s) 1054
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.