RchiOBHm_Chr7g0194471

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0012210
Physical Location & Seq
Forward (+)
12510662 .. 12511649
988 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 633 bp
ATGAGCAAGCCGCAGACACAGAGACCGAAACCGCCACCGTCGGGGCGGACCAACCTTGCGTCGTGCATAGTGGCCACCATCTTCCTAATCTTCGTGGTCATCGTCTCCCTCATCGTCTACTTCACCGTCTTCAAACCCAAAGACCCCAAAATCTCCGTCAGCTCCGTCCAGCTCCCCTCCTTCTCCATCCTCAACTCCACCGTCAACTTCACCTTCTCCCAATACGTCGCCGTCCGCAACCCCAACCGCGCCGCCTTCCGCCACTACGACAGCACCCTCCAGCTCCTCTACTCCGGCAACCAAGTCGGCTTCATGTTCATCCCCGCCGGCGAAATCGAGCCCGGTCAGACCCAGTACATGGCCGCCACTTTCGCCGTCAATTCCTTCCCCGTTTCGGATCCCAATCTCTCCGGGGCGGTCCAGGGCCCGATGGGCTCCCCCCAGTTCGGCGACGGGCTCAGCGGGTTTCGCGGCGGAGGAGGCGGAGGGCCCACGATGGAGATAGAGTCGAGGCTGCAGATGGCGGGTCGGGTTCGGGTCATGCACTTTTTCACCCACCACGCGGAGGCGAATTCCGGGTGTAGAGTCGCCATTGCTGTGAGTGATGGATCTGTGCTGGGTTTTCATTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

210

Amino Acids

22.54

Weight (kDa)

9.37

Isoelectric Point (pI)

45.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 358
AccI GTMKAC 1 cut(s) 117
AccII CGCG 3 cut(s) 249, 471, 563
AclWI GGATC 3 cut(s) 392, 405, 616
AcoI YGGCCR 2 cut(s) 72, 360
AcsI RAATTY 1 cut(s) 571
AfaI GTAC 1 cut(s) 356
AfiI CCNNNNNNNGG 6 cut(s) 41, 358, 394, 446, 562, 565
AgsI TTSAA 1 cut(s) 133
AjnI CCWGG 1 cut(s) 420
AluBI AGCT 3 cut(s) 162, 172, 283
AluI AGCT 3 cut(s) 162, 172, 283
Alw26I GTCTC 2 cut(s) 16, 109
AlwI GGATC 3 cut(s) 392, 405, 616
AoxI GGCC 4 cut(s) 72, 360, 424, 488
ApaI GGGCCC 2 cut(s) 428, 492
ApeKI GCWGC 1 cut(s) 514
ApoI RAATTY 1 cut(s) 571
ArsI GACNNNNNNTTYG 2 cut(s) 141, 173
AspLEI GCGC 1 cut(s) 251
AspS9I GGNCC 6 cut(s) 48, 418, 424, 425, 488, 489
AsuC2I CCSGG 3 cut(s) 342, 412, 577
AsuHPI GGTGA 3 cut(s) 115, 202, 544
AvaII GGWCC 2 cut(s) 48, 418
BaeGI GKGCMC 2 cut(s) 428, 492
BalI TGGCCA 1 cut(s) 74
BamHI GGATCC 1 cut(s) 397
BanII GRGCYC 5 cut(s) 342, 428, 437, 459, 492
BbsI GAAGAC 1 cut(s) 121
BbvI GCAGC 1 cut(s) 501
BccI CCATC 6 cut(s) 86, 194, 424, 490, 514, 599
BceAI ACGGC 2 cut(s) 215, 359
BcgI CGANNNNNNTGC 2 cut(s) 286, 320
BciT130I CCWGG 1 cut(s) 422
BcnI CCSGG 3 cut(s) 342, 412, 577
BcoDI GTCTC 2 cut(s) 16, 109
BfmI CTRYAG 1 cut(s) 515
BglI GCCNNNNNGGC 1 cut(s) 432
BisI GCNGC 5 cut(s) 11, 252, 363, 472, 515
BlpI GCTNAGC 1 cut(s) 458
BlsI GCNGC 5 cut(s) 12, 253, 364, 473, 516
Bme1390I CCNGG 4 cut(s) 342, 412, 422, 577
Bme18I GGWCC 2 cut(s) 48, 418
BmgT120I GGNCC 6 cut(s) 48, 418, 424, 425, 488, 489
BmiI GGNNCC 4 cut(s) 399, 426, 436, 490
BmrFI CCNGG 4 cut(s) 342, 412, 422, 577
BmrI ACTGGG 2 cut(s) 346, 436
BmuI ACTGGG 2 cut(s) 346, 436
BpiI GAAGAC 1 cut(s) 121
BpmI CTGGAG 1 cut(s) 263
Bpu1102I GCTNAGC 1 cut(s) 458
BpuMI CCSGG 3 cut(s) 342, 412, 577
BsaBI GATNNNNATC 1 cut(s) 402
BsaI GGTCTC 1 cut(s) 16
BsaJI CCNNGG 2 cut(s) 411, 421
BsaXI ACNNNNNCTCC 2 cut(s) 491, 521
Bsc4I CCNNNNNNNGG 6 cut(s) 41, 358, 394, 446, 562, 565
Bse118I RCCGGY 1 cut(s) 326
Bse1I ACTGG 2 cut(s) 352, 442
Bse3DI GCAATG 1 cut(s) 591
Bse8I GATNNNNATC 1 cut(s) 402
BseBI CCWGG 1 cut(s) 422
BseDI CCNNGG 2 cut(s) 411, 421
BseGI GGATG 2 cut(s) 186, 318
BseJI GATNNNNATC 1 cut(s) 402
BseLI CCNNNNNNNGG 6 cut(s) 41, 358, 394, 446, 562, 565
BseMI GCAATG 1 cut(s) 591
BseMII CTCAG 1 cut(s) 472
BseNI ACTGG 2 cut(s) 352, 442
BseRI GAGGAG 2 cut(s) 275, 492
BseSI GKGCMC 2 cut(s) 428, 492
BseXI GCAGC 1 cut(s) 501
BseYI CCCAGC 1 cut(s) 616
Bsh1236I CGCG 3 cut(s) 249, 471, 563
BshFI GGCC 4 cut(s) 74, 362, 426, 490
BsiSI CCGG 5 cut(s) 294, 327, 342, 411, 576
BslI CCNNNNNNNGG 6 cut(s) 41, 358, 394, 446, 562, 565
BsmAI GTCTC 2 cut(s) 16, 109
BsmBI CGTCTC 1 cut(s) 109
BsnI GGCC 4 cut(s) 74, 362, 426, 490
Bso31I GGTCTC 1 cut(s) 16
Bsp120I GGGCCC 2 cut(s) 424, 488
Bsp1286I GDGCHC 5 cut(s) 342, 428, 437, 459, 492
Bsp143I GATC 2 cut(s) 397, 608
Bsp1720I GCTNAGC 1 cut(s) 458
BspANI GGCC 4 cut(s) 74, 362, 426, 490
BspCNI CTCAG 1 cut(s) 471
BspFNI CGCG 3 cut(s) 249, 471, 563
BspLI GGNNCC 4 cut(s) 399, 426, 436, 490
BspMAI CTGCAG 1 cut(s) 519
BspPI GGATC 3 cut(s) 392, 405, 616
BspTNI GGTCTC 1 cut(s) 16
BsrDI GCAATG 1 cut(s) 591
BsrFI RCCGGY 1 cut(s) 326
BsrI ACTGG 2 cut(s) 352, 442
BssAI RCCGGY 1 cut(s) 326
BssECI CCNNGG 2 cut(s) 411, 421
BssMI GATC 2 cut(s) 397, 608
Bst2UI CCWGG 1 cut(s) 422
Bst4CI ACNGT 3 cut(s) 39, 127, 202
BstC8I GCNNGC 2 cut(s) 8, 328
BstDEI CTNAG 1 cut(s) 458
BstF5I GGATG 2 cut(s) 186, 318
BstFNI CGCG 3 cut(s) 249, 471, 563
BstHHI GCGC 1 cut(s) 251
BstKTI GATC 2 cut(s) 400, 611
BstMAI GTCTC 2 cut(s) 16, 109
BstMBI GATC 2 cut(s) 397, 608
BstMWI GCNNNNNNNGC 4 cut(s) 371, 432, 468, 480
BstNI CCWGG 1 cut(s) 422
BstSCI CCNGG 4 cut(s) 340, 410, 420, 575
BstSFI CTRYAG 1 cut(s) 515
BstSLI GKGCMC 2 cut(s) 428, 492
BstUI CGCG 3 cut(s) 249, 471, 563
BstV1I GCAGC 1 cut(s) 501
BstV2I GAAGAC 1 cut(s) 121
BstX2I RGATCY 2 cut(s) 397, 608
BstYI RGATCY 2 cut(s) 397, 608
BsuRI GGCC 4 cut(s) 74, 362, 426, 490
BtsCI GGATG 2 cut(s) 186, 318
Cac8I GCNNGC 2 cut(s) 8, 328
CfoI GCGC 1 cut(s) 251
Cfr10I RCCGGY 1 cut(s) 326
Cfr13I GGNCC 6 cut(s) 48, 418, 424, 425, 488, 489
CseI GACGC 1 cut(s) 48
Csp6I GTAC 1 cut(s) 355
CviAII CATG 3 cut(s) 313, 358, 541
CviQI GTAC 1 cut(s) 355
DdeI CTNAG 1 cut(s) 458
DpnI GATC 2 cut(s) 399, 610
DpnII GATC 2 cut(s) 397, 608
EaeI YGGCCR 2 cut(s) 72, 360
EciI GGCGGA 4 cut(s) 61, 248, 489, 498
Eco24I GRGCYC 5 cut(s) 342, 428, 437, 459, 492
Eco31I GGTCTC 1 cut(s) 16
Eco47I GGWCC 2 cut(s) 48, 418
EcoO109I RGGNCCY 2 cut(s) 424, 488
EcoRI GAATTC 1 cut(s) 571
EcoRII CCWGG 1 cut(s) 420
EcoT38I GRGCYC 5 cut(s) 342, 428, 437, 459, 492
Esp3I CGTCTC 1 cut(s) 109
FaeI CATG 3 cut(s) 316, 361, 544
FaiI YATR 4 cut(s) 68, 314, 359, 542
FatI CATG 3 cut(s) 312, 357, 540
FauI CCCGC 3 cut(s) 331, 455, 517
FblI GTMKAC 1 cut(s) 117
Fnu4HI GCNGC 5 cut(s) 11, 252, 363, 472, 515
FokI GGATG 2 cut(s) 173, 305
FriOI GRGCYC 5 cut(s) 342, 428, 437, 459, 492
Fsp4HI GCNGC 5 cut(s) 11, 252, 363, 472, 515
GlaI GCGC 1 cut(s) 250
GluI GCNGC 5 cut(s) 11, 252, 363, 472, 515
GsaI CCCAGC 1 cut(s) 620
GsuI CTGGAG 1 cut(s) 263
HaeIII GGCC 4 cut(s) 74, 362, 426, 490
HapII CCGG 5 cut(s) 294, 327, 342, 411, 576
HgaI GACGC 1 cut(s) 48
HhaI GCGC 1 cut(s) 251
Hin1II CATG 3 cut(s) 316, 361, 544
Hin6I GCGC 1 cut(s) 249
HinP1I GCGC 1 cut(s) 249
HincII GTYRAC 1 cut(s) 205
HindII GTYRAC 1 cut(s) 205
HinfI GANTC 2 cut(s) 506, 585
HpaII CCGG 5 cut(s) 294, 327, 342, 411, 576
HphI GGTGA 3 cut(s) 115, 202, 544
Hpy166II GTNNAC 2 cut(s) 118, 205
Hpy188I TCNGA 2 cut(s) 348, 397
Hpy8I GTNNAC 2 cut(s) 118, 205
Hpy99I CGWCG 4 cut(s) 43, 64, 230, 455
HpyAV CCTTC 4 cut(s) 190, 223, 265, 394
HpyCH4III ACNGT 3 cut(s) 39, 127, 202
HpyCH4IV ACGT 1 cut(s) 225
HpyCH4V TGCA 3 cut(s) 66, 517, 544
HpyF10VI GCNNNNNNNGC 4 cut(s) 371, 432, 468, 480
HpyF3I CTNAG 1 cut(s) 458
HpySE526I ACGT 1 cut(s) 225
Hsp92II CATG 3 cut(s) 316, 361, 544
HspAI GCGC 1 cut(s) 249
KroI GCCGGC 1 cut(s) 326
KroNI GCCGGC 1 cut(s) 328
Kzo9I GATC 2 cut(s) 397, 608
LmnI GCTCC 4 cut(s) 167, 177, 288, 440
Lsp1109I GCAGC 1 cut(s) 501
MaeII ACGT 1 cut(s) 225
MalI GATC 2 cut(s) 399, 610
MboI GATC 2 cut(s) 397, 608
MboII GAAGA 3 cut(s) 73, 82, 121
MflI RGATCY 2 cut(s) 397, 608
MhlI GDGCHC 5 cut(s) 342, 428, 437, 459, 492
MlsI TGGCCA 1 cut(s) 74
MluCI AATT 2 cut(s) 379, 571
MluNI TGGCCA 1 cut(s) 74
MlyI GAGTC 2 cut(s) 515, 594
Mox20I TGGCCA 1 cut(s) 74
MreI CGCCGGCG 1 cut(s) 326
MroNI GCCGGC 1 cut(s) 326
MscI TGGCCA 1 cut(s) 74
MslI CAYNNNNRTG 1 cut(s) 596
Msp20I TGGCCA 1 cut(s) 74
MspA1I CMGCKG 1 cut(s) 462
MspI CCGG 5 cut(s) 294, 327, 342, 411, 576
MspR9I CCNGG 4 cut(s) 342, 412, 422, 577
MvaI CCWGG 1 cut(s) 422
MvnI CGCG 3 cut(s) 249, 471, 563
MwoI GCNNNNNNNGC 4 cut(s) 371, 432, 468, 480
NaeI GCCGGC 1 cut(s) 328
NciI CCSGG 3 cut(s) 342, 412, 577
NdeII GATC 2 cut(s) 397, 608
NgoMIV GCCGGC 1 cut(s) 326
NlaIII CATG 3 cut(s) 316, 361, 544
NlaIV GGNNCC 4 cut(s) 399, 426, 436, 490
PcsI WCGNNNNNNNCGW 1 cut(s) 99
PdiI GCCGGC 1 cut(s) 328
PflMI CCANNNNNTGG 1 cut(s) 358
PkrI GCNGC 5 cut(s) 12, 253, 364, 473, 516
PleI GAGTC 2 cut(s) 514, 593
PpsI GAGTC 2 cut(s) 514, 593
Psp6I CCWGG 1 cut(s) 420
PspFI CCCAGC 1 cut(s) 616
PspGI CCWGG 1 cut(s) 420
PspN4I GGNNCC 4 cut(s) 399, 426, 436, 490
PspOMI GGGCCC 2 cut(s) 424, 488
PspPI GGNCC 6 cut(s) 48, 418, 424, 425, 488, 489
PstI CTGCAG 1 cut(s) 519
PsuI RGATCY 2 cut(s) 397, 608
RsaI GTAC 1 cut(s) 356
RsaNI GTAC 1 cut(s) 355
RseI CAYNNNNRTG 1 cut(s) 596
SatI GCNGC 5 cut(s) 11, 252, 363, 472, 515
Sau3AI GATC 2 cut(s) 397, 608
Sau96I GGNCC 6 cut(s) 48, 418, 424, 425, 488, 489
SchI GAGTC 2 cut(s) 515, 594
ScrFI CCNGG 4 cut(s) 342, 412, 422, 577
SduI GDGCHC 5 cut(s) 342, 428, 437, 459, 492
SetI ASST 6 cut(s) 57, 164, 174, 215, 228, 285
SfcI CTRYAG 1 cut(s) 515
SgrAI CRCCGGYG 1 cut(s) 326
SinI GGWCC 2 cut(s) 48, 418
SmiMI CAYNNNNRTG 1 cut(s) 596
Sse9I AATT 2 cut(s) 379, 571
StyD4I CCNGG 4 cut(s) 340, 410, 420, 575
TaaI ACNGT 3 cut(s) 39, 127, 202
TaiI ACGT 1 cut(s) 228
TaqI TCGA 2 cut(s) 336, 509
TaqII GACCGA 1 cut(s) 40
TasI AATT 2 cut(s) 379, 571
TatI WGTACW 1 cut(s) 354
TauI GCSGC 4 cut(s) 13, 254, 365, 474
TseI GCWGC 1 cut(s) 514
TspDTI ATGAA 3 cut(s) 301, 307, 614
TspGWI ACGGA 2 cut(s) 145, 154
Van91I CCANNNNNTGG 1 cut(s) 358
VpaK11BI GGWCC 2 cut(s) 48, 418
XapI RAATTY 1 cut(s) 571
XmiI GTMKAC 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.