Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012698

Physical Location & Seq

Genomic Coordinates Reverse (-)

13447673 .. 13448393

Gene Structure 721 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGTTGGCCCTCATGGAGAAGGAGGCGGGGATGTTGGCCCGCATGGAGACGGCGAGGTTGGCCCGCCTGGATACGGCGAGGGAGATGGAGACTGGCGGCCCTGCTGGTGGCGCGTTTGGAGTGACCTCTTTCACTAACTTCTTCCCCAAAGAACGAGCATCAAAGATGCTGCAAGCTTGGCCTATGCTGGAATCTTCCTTACAAGACTTTGGCATTTCAAGCTCTCTCAATAGCGTATGTGTGTGTATATATATATATATATATATATATATATATATATATATATACTTTGCTTTTAAGTTTGTTTGTCTTCCTTTAATTGATTCAAACATTTCAACCTGTGATCAGGCAAACAATTCCATCACCGTTTCAACAACCGCAAGGACTAAGGACGCATATGCTATTGACAAGGCCCAGTGTCTGCTTGAACTTTTGTCTGCAACTGATGTTCCGCCGTCCATGGTGTACAAACCTTCTTCTTCCAATTTCATTCTATCACAGCACTTAGTAATATTGGTTGCTAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

175

Amino Acids

19.41

Weight (kDa)

5.8

Isoelectric Point (pI)

34.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012698)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0195631 RchiOBHm_Chr7g0195641 RchiOBHm_Chr7g0211811
rosa_multiflora	Rmu_sc0003314.1_g000004 Rmu_sc0010418.1_g000006
rosa_roxburghii	Rroxscaffold_3G00260270 Rroxscaffold_4G00308620
rosa_rugosa	Rorug07G0025200 Rorug07G0025300
rosa_samantha	Rh4AG083700 Rh4CG090800 Rh7AG152800 Rh7BG154300 Rh7CG158000 Rh7CG158100 Rh7CG158200 Rh7DG153800
rosa_wichuraiana	Rw7G013060 Rw7G013070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	113
AciI	CCGC	6 cut(s)	26, 40, 64, 96, 378, 452
AfaI	GTAC	1 cut(s)	467
AfiI	CCNNNNNNNGG	2 cut(s)	73, 107
AgsI	TTSAA	5 cut(s)	219, 327, 336, 372, 428
AjnI	CCWGG	1 cut(s)	66
AluBI	AGCT	2 cut(s)	176, 222
AluI	AGCT	2 cut(s)	176, 222
Alw26I	GTCTC	2 cut(s)	41, 83
AlwNI	CAGNNNCTG	1 cut(s)	421
AoxI	GGCC	6 cut(s)	6, 36, 60, 97, 179, 411
ApeKI	GCWGC	1 cut(s)	169
AspLEI	GCGC	1 cut(s)	113
AspS9I	GGNCC	5 cut(s)	7, 37, 61, 98, 412
AsuHPI	GGTGA	1 cut(s)	355
BbsI	GAAGAC	1 cut(s)	302
BbvI	GCAGC	1 cut(s)	156
BccI	CCATC	2 cut(s)	79, 368
BceAI	ACGGC	3 cut(s)	66, 90, 439
BciT130I	CCWGG	1 cut(s)	68
BciVI	GTATCC	1 cut(s)	64
BclI	TGATCA	1 cut(s)	343
BcoDI	GTCTC	2 cut(s)	41, 83
BfaI	CTAG	1 cut(s)	522
BfuI	GTATCC	1 cut(s)	64
BisI	GCNGC	2 cut(s)	97, 170
BlsI	GCNGC	2 cut(s)	98, 171
Bme1390I	CCNGG	1 cut(s)	68
BmgT120I	GGNCC	5 cut(s)	7, 37, 61, 98, 412
BmrFI	CCNGG	1 cut(s)	68
BmrI	ACTGGG	1 cut(s)	409
BmsI	GCATC	2 cut(s)	156, 167
BmuI	ACTGGG	1 cut(s)	409
BpiI	GAAGAC	1 cut(s)	302
BsaJI	CCNNGG	1 cut(s)	459
Bsc4I	CCNNNNNNNGG	2 cut(s)	73, 107
Bse1I	ACTGG	2 cut(s)	97, 415
BseBI	CCWGG	1 cut(s)	68
BseDI	CCNNGG	1 cut(s)	459
BseGI	GGATG	1 cut(s)	36
BseLI	CCNNNNNNNGG	2 cut(s)	73, 107
BseNI	ACTGG	2 cut(s)	97, 415
BseXI	GCAGC	1 cut(s)	156
Bsh1236I	CGCG	1 cut(s)	113
BshFI	GGCC	6 cut(s)	8, 38, 62, 99, 181, 413
BslI	CCNNNNNNNGG	2 cut(s)	73, 107
BsmAI	GTCTC	2 cut(s)	41, 83
BsmBI	CGTCTC	1 cut(s)	41
BsnI	GGCC	6 cut(s)	8, 38, 62, 99, 181, 413
Bsp1407I	TGTACA	1 cut(s)	465
Bsp143I	GATC	1 cut(s)	343
Bsp19I	CCATGG	1 cut(s)	459
BspACI	CCGC	6 cut(s)	26, 40, 64, 96, 378, 452
BspANI	GGCC	6 cut(s)	8, 38, 62, 99, 181, 413
BspFNI	CGCG	1 cut(s)	113
BsrGI	TGTACA	1 cut(s)	465
BsrI	ACTGG	2 cut(s)	97, 415
BssECI	CCNNGG	1 cut(s)	459
BssMI	GATC	1 cut(s)	343
BssT1I	CCWWGG	1 cut(s)	459
Bst2UI	CCWGG	1 cut(s)	68
Bst4CI	ACNGT	1 cut(s)	367
BstAUI	TGTACA	1 cut(s)	465
BstC8I	GCNNGC	3 cut(s)	40, 64, 174
BstDEI	CTNAG	2 cut(s)	387, 505
BstDSI	CCRYGG	1 cut(s)	459
BstF5I	GGATG	1 cut(s)	36
BstFNI	CGCG	1 cut(s)	113
BstHHI	GCGC	1 cut(s)	113
BstKTI	GATC	1 cut(s)	346
BstMAI	GTCTC	2 cut(s)	41, 83
BstMBI	GATC	1 cut(s)	343
BstMWI	GCNNNNNNNGC	4 cut(s)	59, 110, 178, 219
BstNI	CCWGG	1 cut(s)	68
BstSCI	CCNGG	1 cut(s)	66
BstUI	CGCG	1 cut(s)	113
BstV1I	GCAGC	1 cut(s)	156
BstV2I	GAAGAC	1 cut(s)	302
BsuI	GTATCC	1 cut(s)	64
BsuRI	GGCC	6 cut(s)	8, 38, 62, 99, 181, 413
BtgI	CCRYGG	1 cut(s)	459
BtsCI	GGATG	1 cut(s)	36
BtsIMutI	CAGTG	1 cut(s)	422
Cac8I	GCNNGC	3 cut(s)	40, 64, 174
CaiI	CAGNNNCTG	1 cut(s)	421
CfoI	GCGC	1 cut(s)	113
Cfr13I	GGNCC	5 cut(s)	7, 37, 61, 98, 412
CseI	GACGC	1 cut(s)	401
Csp6I	GTAC	1 cut(s)	466
CviAII	CATG	3 cut(s)	13, 43, 460
CviJI	RGCY	8 cut(s)	8, 38, 62, 99, 176, 181, 222, 413
CviKI_1	RGCY	8 cut(s)	8, 38, 62, 99, 176, 181, 222, 413
CviQI	GTAC	1 cut(s)	466
DdeI	CTNAG	2 cut(s)	387, 505
DpnI	GATC	1 cut(s)	345
DpnII	GATC	1 cut(s)	343
EciI	GGCGGA	1 cut(s)	441
Eco130I	CCWWGG	1 cut(s)	459
EcoRII	CCWGG	1 cut(s)	66
EcoT14I	CCWWGG	1 cut(s)	459
ErhI	CCWWGG	1 cut(s)	459
Esp3I	CGTCTC	1 cut(s)	41
FaeI	CATG	3 cut(s)	16, 46, 463
FatI	CATG	3 cut(s)	12, 42, 459
FauI	CCCGC	3 cut(s)	19, 47, 71
FauNDI	CATATG	1 cut(s)	397
FbaI	TGATCA	1 cut(s)	343
Fnu4HI	GCNGC	2 cut(s)	97, 170
FokI	GGATG	1 cut(s)	43
Fsp4HI	GCNGC	2 cut(s)	97, 170
FspBI	CTAG	1 cut(s)	522
GlaI	GCGC	1 cut(s)	112
GluI	GCNGC	2 cut(s)	97, 170
HaeIII	GGCC	6 cut(s)	8, 38, 62, 99, 181, 413
HgaI	GACGC	1 cut(s)	401
HhaI	GCGC	1 cut(s)	113
Hin1II	CATG	3 cut(s)	16, 46, 463
Hin6I	GCGC	1 cut(s)	111
HinP1I	GCGC	1 cut(s)	111
HindIII	AAGCTT	1 cut(s)	174
HinfI	GANTC	2 cut(s)	191, 323
HphI	GGTGA	1 cut(s)	355
Hpy166II	GTNNAC	1 cut(s)	466
Hpy8I	GTNNAC	1 cut(s)	466
HpyAV	CCTTC	2 cut(s)	13, 483
HpyCH4III	ACNGT	1 cut(s)	367
HpyCH4V	TGCA	2 cut(s)	172, 440
HpyF10VI	GCNNNNNNNGC	4 cut(s)	59, 110, 178, 219
HpyF3I	CTNAG	2 cut(s)	387, 505
Hsp92II	CATG	3 cut(s)	16, 46, 463
HspAI	GCGC	1 cut(s)	111
Ksp22I	TGATCA	1 cut(s)	343
Kzo9I	GATC	1 cut(s)	343
LpnPI	CCDG	9 cut(s)	53, 78, 80, 90, 114, 173, 332, 352, 428
Lsp1109I	GCAGC	1 cut(s)	156
LweI	GCATC	2 cut(s)	156, 167
MaeI	CTAG	1 cut(s)	522
MaeIII	GTNAC	1 cut(s)	121
MalI	GATC	1 cut(s)	345
MboI	GATC	1 cut(s)	343
MboII	GAAGA	5 cut(s)	133, 186, 302, 468, 471
MluCI	AATT	3 cut(s)	318, 355, 484
MnlI	CCTC	5 cut(s)	16, 20, 48, 72, 136
MseI	TTAA	2 cut(s)	297, 317
MspR9I	CCNGG	1 cut(s)	68
MvaI	CCWGG	1 cut(s)	68
MvnI	CGCG	1 cut(s)	113
MwoI	GCNNNNNNNGC	4 cut(s)	59, 110, 178, 219
NcoI	CCATGG	1 cut(s)	459
NdeI	CATATG	1 cut(s)	397
NdeII	GATC	1 cut(s)	343
NlaIII	CATG	3 cut(s)	16, 46, 463
NmuCI	GTSAC	1 cut(s)	121
PfeI	GAWTC	2 cut(s)	191, 323
PkrI	GCNGC	2 cut(s)	98, 171
Psp6I	CCWGG	1 cut(s)	66
PspGI	CCWGG	1 cut(s)	66
PspPI	GGNCC	5 cut(s)	7, 37, 61, 98, 412
PstNI	CAGNNNCTG	1 cut(s)	421
RsaI	GTAC	1 cut(s)	467
RsaNI	GTAC	1 cut(s)	466
SaqAI	TTAA	2 cut(s)	297, 317
SatI	GCNGC	2 cut(s)	97, 170
Sau3AI	GATC	1 cut(s)	343
Sau96I	GGNCC	5 cut(s)	7, 37, 61, 98, 412
ScrFI	CCNGG	1 cut(s)	68
SetI	ASST	7 cut(s)	59, 128, 178, 224, 341, 475, 527
SfaNI	GCATC	2 cut(s)	156, 167
Sse9I	AATT	3 cut(s)	318, 355, 484
SsiI	CCGC	6 cut(s)	26, 40, 64, 96, 378, 452
SspI	AATATT	1 cut(s)	513
SspMI	CTAG	1 cut(s)	522
StyD4I	CCNGG	1 cut(s)	66
StyI	CCWWGG	1 cut(s)	459
TaaI	ACNGT	1 cut(s)	367
TasI	AATT	3 cut(s)	318, 355, 484
TatI	WGTACW	1 cut(s)	465
TauI	GCSGC	1 cut(s)	99
TfiI	GAWTC	2 cut(s)	191, 323
Tru1I	TTAA	2 cut(s)	297, 317
Tru9I	TTAA	2 cut(s)	297, 317
TscAI	CASTG	1 cut(s)	422
TseFI	GTSAC	1 cut(s)	121
TseI	GCWGC	1 cut(s)	169
Tsp45I	GTSAC	1 cut(s)	121
TspDTI	ATGAA	1 cut(s)	478
TspRI	CASTG	1 cut(s)	422
XspI	CTAG	1 cut(s)	522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.