RchiOBHm_Chr7g0195631

Belongs to the short-chain dehydrogenases reductases (SDR) family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
13443000 .. 13444267
1268 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17497

Sequence Viewer

Length: 468 bp
ATGTTGCAGTCGTGTTTGAAGGATTACAGCAATATTTCATGCACACTGGTTGCGAACGACTGTGGCATGACGGTCTCAATAGTCAGAAGCATTGGGGATTCAGATATTGTTGGGAAGGCTTGGGATCTTCTTCGACTCATGTCAGCAAGTAAAGTTCCGGTTCTTTTGGCAGAGATGATACTGAAAGGCACTCTGCAGTGTGTCTTCATCAAGACTGGGTATGACGGTGGCCTTTGCTCAAAAATTGGGATCGAGATGCGTCAATTTTATCAAGTACTGCTGCCACGTCTTGAGTGCATCTTGAAGAATGCTGCAAGCCGAGCAGGTTGCAAGCTTTTGTTCAAGGATGAAACTATAATTGTGTTGGGGAAAGATCCTGCAGTCTTAAATTTGTTCGAGATGAGTGCACGGAAATGGCTGGAAGAACACAAGGATGATAAGGATGATTATGAAAGTCGCAAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

155

Amino Acids

17.33

Weight (kDa)

6.58

Isoelectric Point (pI)

49.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 314
AclWI GGATC 3 cut(s) 132, 257, 368
AcsI RAATTY 1 cut(s) 388
AfaI GTAC 1 cut(s) 276
AgsI TTSAA 3 cut(s) 19, 304, 343
AjiI CACGTC 1 cut(s) 287
AluBI AGCT 1 cut(s) 334
AluI AGCT 1 cut(s) 334
Alw21I GWGCWC 1 cut(s) 409
Alw26I GTCTC 1 cut(s) 79
Alw44I GTGCAC 1 cut(s) 405
AlwI GGATC 3 cut(s) 132, 257, 368
AoxI GGCC 1 cut(s) 229
ApaLI GTGCAC 1 cut(s) 405
ApeKI GCWGC 2 cut(s) 280, 311
ApoI RAATTY 1 cut(s) 388
BaeGI GKGCMC 1 cut(s) 409
BbsI GAAGAC 1 cut(s) 196
Bbv12I GWGCWC 1 cut(s) 409
BbvI GCAGC 2 cut(s) 267, 298
BcgI CGANNNNNNTGC 4 cut(s) 309, 343, 386, 420
BcoDI GTCTC 1 cut(s) 79
BfmI CTRYAG 2 cut(s) 194, 378
BfuAI ACCTGC 1 cut(s) 314
BisI GCNGC 2 cut(s) 281, 312
BlsI GCNGC 2 cut(s) 282, 313
BmcAI AGTACT 1 cut(s) 276
BmgBI CACGTC 1 cut(s) 287
BmrI ACTGGG 1 cut(s) 225
BmsI GCATC 2 cut(s) 246, 306
BmuI ACTGGG 1 cut(s) 225
BoxI GACNNNNGTC 1 cut(s) 139
BpiI GAAGAC 1 cut(s) 196
BpuEI CTTGAG 1 cut(s) 311
BsaI GGTCTC 1 cut(s) 79
BsaWI WCCGGW 1 cut(s) 157
Bse1I ACTGG 2 cut(s) 51, 220
BseGI GGATG 3 cut(s) 352, 439, 448
BseNI ACTGG 2 cut(s) 51, 220
BseSI GKGCMC 1 cut(s) 409
BseXI GCAGC 2 cut(s) 267, 298
BshFI GGCC 1 cut(s) 231
BsiHKAI GWGCWC 1 cut(s) 409
BsiSI CCGG 1 cut(s) 158
BsmAI GTCTC 1 cut(s) 79
BsmI GAATGC 1 cut(s) 313
BsnI GGCC 1 cut(s) 231
Bso31I GGTCTC 1 cut(s) 79
Bsp1286I GDGCHC 1 cut(s) 409
Bsp143I GATC 3 cut(s) 124, 249, 373
BspANI GGCC 1 cut(s) 231
BspMAI CTGCAG 2 cut(s) 198, 382
BspMI ACCTGC 1 cut(s) 314
BspPI GGATC 3 cut(s) 132, 257, 368
BspTNI GGTCTC 1 cut(s) 79
BsrI ACTGG 2 cut(s) 51, 220
BssMI GATC 3 cut(s) 124, 249, 373
Bst4CI ACNGT 3 cut(s) 62, 73, 227
BstC8I GCNNGC 2 cut(s) 316, 332
BstF5I GGATG 3 cut(s) 352, 439, 448
BstKTI GATC 3 cut(s) 127, 252, 376
BstMAI GTCTC 1 cut(s) 79
BstMBI GATC 3 cut(s) 124, 249, 373
BstMWI GCNNNNNNNGC 1 cut(s) 320
BstPAI GACNNNNGTC 1 cut(s) 139
BstSFI CTRYAG 2 cut(s) 194, 378
BstSLI GKGCMC 1 cut(s) 409
BstV1I GCAGC 2 cut(s) 267, 298
BstV2I GAAGAC 1 cut(s) 196
BstX2I RGATCY 2 cut(s) 124, 373
BstYI RGATCY 2 cut(s) 124, 373
BsuRI GGCC 1 cut(s) 231
BtrI CACGTC 1 cut(s) 287
BtsCI GGATG 3 cut(s) 352, 439, 448
BtsI GCAGTG 1 cut(s) 203
BtsIMutI CAGTG 2 cut(s) 44, 203
BveI ACCTGC 1 cut(s) 314
Cac8I GCNNGC 2 cut(s) 316, 332
CseI GACGC 1 cut(s) 248
Csp6I GTAC 1 cut(s) 275
CviAII CATG 3 cut(s) 39, 67, 139
CviJI RGCY 5 cut(s) 119, 231, 318, 334, 418
CviKI_1 RGCY 5 cut(s) 119, 231, 318, 334, 418
CviQI GTAC 1 cut(s) 275
DpnI GATC 3 cut(s) 126, 251, 375
DpnII GATC 3 cut(s) 124, 249, 373
Eco31I GGTCTC 1 cut(s) 79
FaeI CATG 3 cut(s) 42, 70, 142
FaiI YATR 6 cut(s) 40, 68, 140, 222, 356, 450
FatI CATG 3 cut(s) 38, 66, 138
Fnu4HI GCNGC 2 cut(s) 281, 312
FokI GGATG 3 cut(s) 359, 446, 455
Fsp4HI GCNGC 2 cut(s) 281, 312
GluI GCNGC 2 cut(s) 281, 312
HaeIII GGCC 1 cut(s) 231
HapII CCGG 1 cut(s) 158
HgaI GACGC 1 cut(s) 248
Hin1II CATG 3 cut(s) 42, 70, 142
HindIII AAGCTT 1 cut(s) 332
HinfI GANTC 2 cut(s) 98, 135
HpaII CCGG 1 cut(s) 158
Hpy166II GTNNAC 1 cut(s) 407
Hpy188I TCNGA 2 cut(s) 86, 103
Hpy188III TCNNGA 5 cut(s) 211, 253, 290, 301, 397
Hpy8I GTNNAC 1 cut(s) 407
HpyAV CCTTC 2 cut(s) 13, 109
HpyCH4III ACNGT 3 cut(s) 62, 73, 227
HpyCH4IV ACGT 1 cut(s) 286
HpyCH4V TGCA 8 cut(s) 7, 42, 196, 297, 314, 330, 380, 407
HpyF10VI GCNNNNNNNGC 1 cut(s) 320
HpySE526I ACGT 1 cut(s) 286
Hsp92II CATG 3 cut(s) 42, 70, 142
Kzo9I GATC 3 cut(s) 124, 249, 373
LpnPI CCDG 6 cut(s) 32, 171, 201, 309, 390, 404
Lsp1109I GCAGC 2 cut(s) 267, 298
LweI GCATC 2 cut(s) 246, 306
MaeII ACGT 1 cut(s) 286
MalI GATC 3 cut(s) 126, 251, 375
MboI GATC 3 cut(s) 124, 249, 373
MboII GAAGA 5 cut(s) 119, 122, 196, 316, 434
MflI RGATCY 2 cut(s) 124, 373
MhlI GDGCHC 1 cut(s) 409
MluCI AATT 4 cut(s) 243, 263, 357, 388
MlyI GAGTC 1 cut(s) 129
MseI TTAA 1 cut(s) 386
MslI CAYNNNNRTG 2 cut(s) 412, 432
MspI CCGG 1 cut(s) 158
Mva1269I GAATGC 1 cut(s) 313
MwoI GCNNNNNNNGC 1 cut(s) 320
NdeII GATC 3 cut(s) 124, 249, 373
NlaIII CATG 3 cut(s) 42, 70, 142
NmeAIII GCCGAG 1 cut(s) 344
PctI GAATGC 1 cut(s) 313
PfeI GAWTC 1 cut(s) 98
PkrI GCNGC 2 cut(s) 282, 313
PleI GAGTC 1 cut(s) 129
PpsI GAGTC 1 cut(s) 129
PshAI GACNNNNGTC 1 cut(s) 139
PstI CTGCAG 2 cut(s) 198, 382
PsuI RGATCY 2 cut(s) 124, 373
RsaI GTAC 1 cut(s) 276
RsaNI GTAC 1 cut(s) 275
RseI CAYNNNNRTG 2 cut(s) 412, 432
SaqAI TTAA 1 cut(s) 386
SatI GCNGC 2 cut(s) 281, 312
Sau3AI GATC 3 cut(s) 124, 249, 373
ScaI AGTACT 1 cut(s) 276
SchI GAGTC 1 cut(s) 129
SduI GDGCHC 1 cut(s) 409
SetI ASST 3 cut(s) 289, 328, 336
SfaNI GCATC 2 cut(s) 246, 306
SfcI CTRYAG 2 cut(s) 194, 378
SmiMI CAYNNNNRTG 2 cut(s) 412, 432
SmlI CTYRAG 1 cut(s) 290
SmoI CTYRAG 1 cut(s) 290
Sse9I AATT 4 cut(s) 243, 263, 357, 388
SspI AATATT 1 cut(s) 34
TaaI ACNGT 3 cut(s) 62, 73, 227
TaiI ACGT 1 cut(s) 289
TaqI TCGA 3 cut(s) 133, 252, 396
TasI AATT 4 cut(s) 243, 263, 357, 388
TatI WGTACW 1 cut(s) 274
TfiI GAWTC 1 cut(s) 98
Tru1I TTAA 1 cut(s) 386
Tru9I TTAA 1 cut(s) 386
TscAI CASTG 2 cut(s) 51, 203
TseI GCWGC 2 cut(s) 280, 311
TspDTI ATGAA 4 cut(s) 27, 196, 363, 465
TspGWI ACGGA 1 cut(s) 424
TspRI CASTG 2 cut(s) 51, 203
VneI GTGCAC 1 cut(s) 405
XapI RAATTY 1 cut(s) 388
ZrmI AGTACT 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.