Rroxscaffold_4G00308620

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
30166077 .. 30166289
213 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00308620.1

Sequence Viewer

Length: 213 bp
ATGGACAGCATGGAGGTGGACGGTTCCGGCCCTTCAAAGACCTCCTACGCGCCTTTTGTATCCGATGAGATGTGCTATTGGTTGAGGTCTCTTGAGGCTCGGGACCGCAAGAAGATGTTGGCCCTCATGCGAAAGGAGGCGGAGATGTTGGCCGCCCGGATACGGCGAGGGAGATGGAGACCGGCGGCCCCGCCGGTGGCGCGTTTGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

70

Amino Acids

8.07

Weight (kDa)

9.73

Isoelectric Point (pI)

62.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 50, 202
AciI CCGC 5 cut(s) 106, 140, 153, 185, 191
AcoI YGGCCR 1 cut(s) 150
AfiI CCNNNNNNNGG 2 cut(s) 162, 196
AgsI TTSAA 1 cut(s) 36
Alw26I GTCTC 2 cut(s) 93, 172
Ama87I CYCGRG 1 cut(s) 99
AoxI GGCC 4 cut(s) 28, 120, 150, 186
AspLEI GCGC 2 cut(s) 52, 202
AspS9I GGNCC 4 cut(s) 29, 103, 121, 187
AsuC2I CCSGG 1 cut(s) 157
AvaI CYCGRG 1 cut(s) 99
AvaII GGWCC 1 cut(s) 103
BccI CCATC 1 cut(s) 168
BceAI ACGGC 1 cut(s) 179
BciVI GTATCC 2 cut(s) 70, 153
BcnI CCSGG 1 cut(s) 157
BcoDI GTCTC 2 cut(s) 93, 172
BfuI GTATCC 2 cut(s) 70, 153
BisI GCNGC 2 cut(s) 153, 186
BlsI GCNGC 2 cut(s) 154, 187
Bme1390I CCNGG 1 cut(s) 157
Bme18I GGWCC 1 cut(s) 103
BmeT110I CYCGRG 1 cut(s) 99
BmgT120I GGNCC 4 cut(s) 29, 103, 121, 187
BmiI GGNNCC 3 cut(s) 25, 104, 189
BmrFI CCNGG 1 cut(s) 157
BpuEI CTTGAG 1 cut(s) 113
BpuMI CCSGG 1 cut(s) 157
BsaI GGTCTC 2 cut(s) 93, 172
Bsc4I CCNNNNNNNGG 2 cut(s) 162, 196
Bse118I RCCGGY 2 cut(s) 181, 193
BseLI CCNNNNNNNGG 2 cut(s) 162, 196
Bsh1236I CGCG 2 cut(s) 50, 202
BshFI GGCC 4 cut(s) 30, 122, 152, 188
BsiHKCI CYCGRG 1 cut(s) 99
BsiSI CCGG 4 cut(s) 27, 157, 182, 194
BslFI GGGAC 1 cut(s) 116
BslI CCNNNNNNNGG 2 cut(s) 162, 196
BsmAI GTCTC 2 cut(s) 93, 172
BsmFI GGGAC 1 cut(s) 116
BsnI GGCC 4 cut(s) 30, 122, 152, 188
Bso31I GGTCTC 2 cut(s) 93, 172
BsoBI CYCGRG 1 cut(s) 99
BspACI CCGC 5 cut(s) 106, 140, 153, 185, 191
BspANI GGCC 4 cut(s) 30, 122, 152, 188
BspFNI CGCG 2 cut(s) 50, 202
BspLI GGNNCC 3 cut(s) 25, 104, 189
BspTNI GGTCTC 2 cut(s) 93, 172
BsrFI RCCGGY 2 cut(s) 181, 193
BssAI RCCGGY 2 cut(s) 181, 193
Bst4CI ACNGT 1 cut(s) 23
BstFNI CGCG 2 cut(s) 50, 202
BstHHI GCGC 2 cut(s) 52, 202
BstMAI GTCTC 2 cut(s) 93, 172
BstMWI GCNNNNNNNGC 1 cut(s) 199
BstSCI CCNGG 1 cut(s) 155
BstUI CGCG 2 cut(s) 50, 202
BsuI GTATCC 2 cut(s) 70, 153
BsuRI GGCC 4 cut(s) 30, 122, 152, 188
CfoI GCGC 2 cut(s) 52, 202
Cfr10I RCCGGY 2 cut(s) 181, 193
Cfr13I GGNCC 4 cut(s) 29, 103, 121, 187
CviAII CATG 2 cut(s) 10, 127
CviJI RGCY 5 cut(s) 30, 98, 122, 152, 188
CviKI_1 RGCY 5 cut(s) 30, 98, 122, 152, 188
EaeI YGGCCR 1 cut(s) 150
EciI GGCGGA 1 cut(s) 155
Eco31I GGTCTC 2 cut(s) 93, 172
Eco47I GGWCC 1 cut(s) 103
Eco88I CYCGRG 1 cut(s) 99
FaeI CATG 2 cut(s) 13, 130
FaiI YATR 2 cut(s) 11, 128
FaqI GGGAC 1 cut(s) 116
FatI CATG 2 cut(s) 9, 126
FauI CCCGC 1 cut(s) 198
Fnu4HI GCNGC 2 cut(s) 153, 186
Fsp4HI GCNGC 2 cut(s) 153, 186
GlaI GCGC 2 cut(s) 51, 201
GluI GCNGC 2 cut(s) 153, 186
HaeIII GGCC 4 cut(s) 30, 122, 152, 188
HapII CCGG 4 cut(s) 27, 157, 182, 194
HhaI GCGC 2 cut(s) 52, 202
Hin1II CATG 2 cut(s) 13, 130
Hin6I GCGC 2 cut(s) 50, 200
HinP1I GCGC 2 cut(s) 50, 200
HpaII CCGG 4 cut(s) 27, 157, 182, 194
Hpy166II GTNNAC 1 cut(s) 19
Hpy188I TCNGA 1 cut(s) 64
Hpy188III TCNNGA 2 cut(s) 92, 101
Hpy8I GTNNAC 1 cut(s) 19
HpyAV CCTTC 1 cut(s) 42
HpyCH4III ACNGT 1 cut(s) 23
HpyF10VI GCNNNNNNNGC 1 cut(s) 199
Hsp92II CATG 2 cut(s) 13, 130
HspAI GCGC 2 cut(s) 50, 200
LpnPI CCDG 4 cut(s) 40, 170, 195, 207
MboII GAAGA 1 cut(s) 124
MnlI CCTC 7 cut(s) 7, 52, 78, 88, 130, 134, 161
MslI CAYNNNNRTG 1 cut(s) 14
MspI CCGG 4 cut(s) 27, 157, 182, 194
MspR9I CCNGG 1 cut(s) 157
MvnI CGCG 2 cut(s) 50, 202
MwoI GCNNNNNNNGC 1 cut(s) 199
NciI CCSGG 1 cut(s) 157
NlaIII CATG 2 cut(s) 13, 130
NlaIV GGNNCC 3 cut(s) 25, 104, 189
PkrI GCNGC 2 cut(s) 154, 187
PspN4I GGNNCC 3 cut(s) 25, 104, 189
PspPI GGNCC 4 cut(s) 29, 103, 121, 187
RseI CAYNNNNRTG 1 cut(s) 14
SatI GCNGC 2 cut(s) 153, 186
Sau96I GGNCC 4 cut(s) 29, 103, 121, 187
ScrFI CCNGG 1 cut(s) 157
SetI ASST 3 cut(s) 18, 44, 89
SgrAI CRCCGGYG 1 cut(s) 193
SinI GGWCC 1 cut(s) 103
SmiMI CAYNNNNRTG 1 cut(s) 14
SmlI CTYRAG 1 cut(s) 92
SmoI CTYRAG 1 cut(s) 92
SsiI CCGC 5 cut(s) 106, 140, 153, 185, 191
StyD4I CCNGG 1 cut(s) 155
TaaI ACNGT 1 cut(s) 23
TauI GCSGC 2 cut(s) 155, 188
VpaK11BI GGWCC 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.