RchiOBHm_Chr7g0211811

Belongs to the short-chain dehydrogenases reductases (SDR) family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
29008189 .. 29009566
1378 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18949

Sequence Viewer

Length: 357 bp
ATGATGCTGCTGTTGATTTGCCGTCAGAGCCAAACATGGACGAGTCTGGCCATTGATCATCGAACCGAGATATCATTATTCATACCATTCCCGAAAAAAATCCAAGATTCACAGATAAACGACTATTTTGTCAAGATGAATTTGTTTGTAGAAAGGTATGGCGTTTCATGTACACTGAATGAGATAGAGCGAACCATCACACTTTCAGAAACCAACTCGCATAATGGCTACTTTGTAATGACCTCTTACACTAACTACTTCCACCAAAATCAAGGAACAAAGTTGCAAGAAGCTTGGCCTATGGTGGAATCTTCCTTAGAACTGATTGGCATTTCATGCACTCTGAATATGGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

118

Amino Acids

13.71

Weight (kDa)

5.5

Isoelectric Point (pI)

45.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 128
AcoI YGGCCR 1 cut(s) 48
AcsI RAATTY 1 cut(s) 139
AfaI GTAC 1 cut(s) 172
AluBI AGCT 1 cut(s) 293
AluI AGCT 1 cut(s) 293
AoxI GGCC 3 cut(s) 48, 296, 351
ApeKI GCWGC 1 cut(s) 7
ApoI RAATTY 1 cut(s) 139
BalI TGGCCA 1 cut(s) 50
BccI CCATC 1 cut(s) 203
BceAI ACGGC 1 cut(s) 6
BclI TGATCA 1 cut(s) 55
BfaI CTAG 1 cut(s) 355
BisI GCNGC 1 cut(s) 8
BlsI GCNGC 1 cut(s) 9
BshFI GGCC 3 cut(s) 50, 298, 353
BsnI GGCC 3 cut(s) 50, 298, 353
Bsp1407I TGTACA 1 cut(s) 170
Bsp143I GATC 1 cut(s) 55
BspANI GGCC 3 cut(s) 50, 298, 353
BsrGI TGTACA 1 cut(s) 170
BssMI GATC 1 cut(s) 55
BstAPI GCANNNNNTGC 1 cut(s) 336
BstAUI TGTACA 1 cut(s) 170
BstDEI CTNAG 1 cut(s) 316
BstKTI GATC 1 cut(s) 58
BstMBI GATC 1 cut(s) 55
BstMWI GCNNNNNNNGC 2 cut(s) 27, 336
BsuRI GGCC 3 cut(s) 50, 298, 353
BtsIMutI CAGTG 1 cut(s) 173
Csp6I GTAC 1 cut(s) 171
CviAII CATG 3 cut(s) 36, 168, 336
CviJI RGCY 6 cut(s) 30, 50, 228, 293, 298, 353
CviKI_1 RGCY 6 cut(s) 30, 50, 228, 293, 298, 353
CviQI GTAC 1 cut(s) 171
DdeI CTNAG 1 cut(s) 316
DpnI GATC 1 cut(s) 57
DpnII GATC 1 cut(s) 55
DrdI GACNNNNNNGTC 1 cut(s) 128
DseDI GACNNNNNNGTC 1 cut(s) 128
EaeI YGGCCR 1 cut(s) 48
Eco32I GATATC 1 cut(s) 72
EcoRV GATATC 1 cut(s) 72
FaeI CATG 3 cut(s) 39, 171, 339
FaiI YATR 8 cut(s) 37, 83, 159, 169, 222, 302, 337, 350
FatI CATG 3 cut(s) 35, 167, 335
FbaI TGATCA 1 cut(s) 55
Fnu4HI GCNGC 1 cut(s) 8
Fsp4HI GCNGC 1 cut(s) 8
FspBI CTAG 1 cut(s) 355
GluI GCNGC 1 cut(s) 8
HaeIII GGCC 3 cut(s) 50, 298, 353
Hin1II CATG 3 cut(s) 39, 171, 339
HindIII AAGCTT 1 cut(s) 291
HinfI GANTC 3 cut(s) 43, 107, 308
Hpy166II GTNNAC 1 cut(s) 173
Hpy188I TCNGA 3 cut(s) 27, 208, 345
Hpy188III TCNNGA 2 cut(s) 91, 133
Hpy8I GTNNAC 1 cut(s) 173
HpyCH4V TGCA 2 cut(s) 286, 339
HpyF10VI GCNNNNNNNGC 2 cut(s) 27, 336
HpyF3I CTNAG 1 cut(s) 316
Hsp92II CATG 3 cut(s) 39, 171, 339
Ksp22I TGATCA 1 cut(s) 55
Kzo9I GATC 1 cut(s) 55
LpnPI CCDG 1 cut(s) 32
MaeI CTAG 1 cut(s) 355
MalI GATC 1 cut(s) 57
MboI GATC 1 cut(s) 55
MboII GAAGA 1 cut(s) 303
MlsI TGGCCA 1 cut(s) 50
MluCI AATT 1 cut(s) 139
MluNI TGGCCA 1 cut(s) 50
MlyI GAGTC 1 cut(s) 52
MnlI CCTC 1 cut(s) 253
Mox20I TGGCCA 1 cut(s) 50
MscI TGGCCA 1 cut(s) 50
Msp20I TGGCCA 1 cut(s) 50
MwoI GCNNNNNNNGC 2 cut(s) 27, 336
NdeII GATC 1 cut(s) 55
NlaIII CATG 3 cut(s) 39, 171, 339
PfeI GAWTC 2 cut(s) 107, 308
PkrI GCNGC 1 cut(s) 9
PleI GAGTC 1 cut(s) 51
PpsI GAGTC 1 cut(s) 51
RsaI GTAC 1 cut(s) 172
RsaNI GTAC 1 cut(s) 171
SatI GCNGC 1 cut(s) 8
Sau3AI GATC 1 cut(s) 55
SchI GAGTC 1 cut(s) 52
SetI ASST 3 cut(s) 158, 245, 295
Sse9I AATT 1 cut(s) 139
SspMI CTAG 1 cut(s) 355
TaqI TCGA 1 cut(s) 61
TasI AATT 1 cut(s) 139
TatI WGTACW 1 cut(s) 170
TfiI GAWTC 2 cut(s) 107, 308
TscAI CASTG 1 cut(s) 180
TseI GCWGC 1 cut(s) 7
TspDTI ATGAA 4 cut(s) 70, 152, 156, 324
TspRI CASTG 1 cut(s) 180
XapI RAATTY 1 cut(s) 139
XspI CTAG 1 cut(s) 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.