Rw7G013060

Belongs to the short-chain dehydrogenases reductases (SDR) family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Reverse (-)
12399323 .. 12401149
1827 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G013060.1

Sequence Viewer

Length: 462 bp
ATGACGGCGTGGCTGAGATCACCTGTTTCTGTAGGTTATACGCTAATGAACGACTGTGGCATGACGGTCTCAATAGCCAGAAGCATTGGGGATTCAGATATTGTTGGGAAGGCTTGGGATCTTCTTCGACTCATGGCAGCAACTAAAGTTCCGGTTCTTGTGGCAGAGATGATACTGAAAGGCACTCTGCATTGTGTCTTCATCAAGACTGGGTATGACGGTGGCCTTTGCTCAAAAATTGGGATCGAGATGCGTCAATTTTATCAAGTACTGCTGCCACGTCTTGAGTGCATCTTGAAGAATGCTGCAAGCCGAGCAGGTTGCAAGCTTTTGTTCAAGGATGAAACTATAATTGTGTTGGGGAAAGATCCTGCAGTCTTAAATTTGTTCGAGATGAGTGCACGGAAATGGCTGGAAGAACACAAGGATGATAAGGATGATTATGAAAGTCGCAAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

153

Amino Acids

17.12

Weight (kDa)

7.6

Isoelectric Point (pI)

39.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 308
AclWI GGATC 3 cut(s) 126, 251, 362
AcsI RAATTY 1 cut(s) 382
AfaI GTAC 1 cut(s) 270
AgsI TTSAA 2 cut(s) 298, 337
AjiI CACGTC 1 cut(s) 281
AluBI AGCT 1 cut(s) 328
AluI AGCT 1 cut(s) 328
Alw21I GWGCWC 1 cut(s) 403
Alw26I GTCTC 1 cut(s) 73
Alw44I GTGCAC 1 cut(s) 399
AlwI GGATC 3 cut(s) 126, 251, 362
AoxI GGCC 1 cut(s) 223
ApaLI GTGCAC 1 cut(s) 399
ApeKI GCWGC 3 cut(s) 137, 274, 305
ApoI RAATTY 1 cut(s) 382
AsuHPI GGTGA 1 cut(s) 12
BaeGI GKGCMC 1 cut(s) 403
BbsI GAAGAC 1 cut(s) 190
Bbv12I GWGCWC 1 cut(s) 403
BbvI GCAGC 3 cut(s) 149, 261, 292
BceAI ACGGC 1 cut(s) 21
BcgI CGANNNNNNTGC 4 cut(s) 303, 337, 380, 414
BcoDI GTCTC 1 cut(s) 73
BfmI CTRYAG 2 cut(s) 30, 372
BfuAI ACCTGC 1 cut(s) 308
BisI GCNGC 3 cut(s) 138, 275, 306
BlsI GCNGC 3 cut(s) 139, 276, 307
BmcAI AGTACT 1 cut(s) 270
BmgBI CACGTC 1 cut(s) 281
BmrI ACTGGG 1 cut(s) 219
BmsI GCATC 2 cut(s) 240, 300
BmuI ACTGGG 1 cut(s) 219
BpiI GAAGAC 1 cut(s) 190
BpuEI CTTGAG 1 cut(s) 305
BsaI GGTCTC 1 cut(s) 73
BsaWI WCCGGW 1 cut(s) 151
Bse1I ACTGG 1 cut(s) 214
BseGI GGATG 3 cut(s) 346, 433, 442
BseMII CTCAG 1 cut(s) 5
BseNI ACTGG 1 cut(s) 214
BseSI GKGCMC 1 cut(s) 403
BseXI GCAGC 3 cut(s) 149, 261, 292
BshFI GGCC 1 cut(s) 225
BsiHKAI GWGCWC 1 cut(s) 403
BsiSI CCGG 1 cut(s) 152
BsmAI GTCTC 1 cut(s) 73
BsmI GAATGC 1 cut(s) 307
BsnI GGCC 1 cut(s) 225
Bso31I GGTCTC 1 cut(s) 73
Bsp1286I GDGCHC 1 cut(s) 403
Bsp143I GATC 4 cut(s) 17, 118, 243, 367
BspANI GGCC 1 cut(s) 225
BspCNI CTCAG 1 cut(s) 6
BspMAI CTGCAG 1 cut(s) 376
BspMI ACCTGC 1 cut(s) 308
BspPI GGATC 3 cut(s) 126, 251, 362
BspTNI GGTCTC 1 cut(s) 73
BsrI ACTGG 1 cut(s) 214
BssMI GATC 4 cut(s) 17, 118, 243, 367
Bst4CI ACNGT 3 cut(s) 56, 67, 221
BstC8I GCNNGC 2 cut(s) 310, 326
BstDEI CTNAG 1 cut(s) 14
BstF5I GGATG 3 cut(s) 346, 433, 442
BstKTI GATC 4 cut(s) 20, 121, 246, 370
BstMAI GTCTC 1 cut(s) 73
BstMBI GATC 4 cut(s) 17, 118, 243, 367
BstMWI GCNNNNNNNGC 1 cut(s) 314
BstSFI CTRYAG 2 cut(s) 30, 372
BstSLI GKGCMC 1 cut(s) 403
BstV1I GCAGC 3 cut(s) 149, 261, 292
BstV2I GAAGAC 1 cut(s) 190
BstX2I RGATCY 2 cut(s) 118, 367
BstYI RGATCY 2 cut(s) 118, 367
BsuRI GGCC 1 cut(s) 225
BtrI CACGTC 1 cut(s) 281
BtsCI GGATG 3 cut(s) 346, 433, 442
BveI ACCTGC 1 cut(s) 308
Cac8I GCNNGC 2 cut(s) 310, 326
CseI GACGC 1 cut(s) 242
Csp6I GTAC 1 cut(s) 269
CviAII CATG 2 cut(s) 61, 133
CviJI RGCY 7 cut(s) 13, 77, 113, 225, 312, 328, 412
CviKI_1 RGCY 7 cut(s) 13, 77, 113, 225, 312, 328, 412
CviQI GTAC 1 cut(s) 269
DdeI CTNAG 1 cut(s) 14
DpnI GATC 4 cut(s) 19, 120, 245, 369
DpnII GATC 4 cut(s) 17, 118, 243, 367
Eco31I GGTCTC 1 cut(s) 73
FaeI CATG 2 cut(s) 64, 136
FaiI YATR 6 cut(s) 39, 62, 134, 216, 350, 444
FatI CATG 2 cut(s) 60, 132
Fnu4HI GCNGC 3 cut(s) 138, 275, 306
FokI GGATG 3 cut(s) 353, 440, 449
Fsp4HI GCNGC 3 cut(s) 138, 275, 306
GluI GCNGC 3 cut(s) 138, 275, 306
HaeIII GGCC 1 cut(s) 225
HapII CCGG 1 cut(s) 152
HgaI GACGC 1 cut(s) 242
Hin1II CATG 2 cut(s) 64, 136
HindIII AAGCTT 1 cut(s) 326
HinfI GANTC 2 cut(s) 92, 129
HpaII CCGG 1 cut(s) 152
HphI GGTGA 1 cut(s) 12
Hpy166II GTNNAC 1 cut(s) 401
Hpy188I TCNGA 1 cut(s) 97
Hpy188III TCNNGA 5 cut(s) 205, 247, 284, 295, 391
Hpy8I GTNNAC 1 cut(s) 401
HpyAV CCTTC 1 cut(s) 103
HpyCH4III ACNGT 3 cut(s) 56, 67, 221
HpyCH4IV ACGT 1 cut(s) 280
HpyCH4V TGCA 6 cut(s) 190, 291, 308, 324, 374, 401
HpyF10VI GCNNNNNNNGC 1 cut(s) 314
HpyF3I CTNAG 1 cut(s) 14
HpySE526I ACGT 1 cut(s) 280
Hsp92II CATG 2 cut(s) 64, 136
Kzo9I GATC 4 cut(s) 17, 118, 243, 367
LpnPI CCDG 7 cut(s) 36, 91, 165, 195, 303, 384, 398
Lsp1109I GCAGC 3 cut(s) 149, 261, 292
LweI GCATC 2 cut(s) 240, 300
MaeII ACGT 1 cut(s) 280
MalI GATC 4 cut(s) 19, 120, 245, 369
MboI GATC 4 cut(s) 17, 118, 243, 367
MboII GAAGA 5 cut(s) 113, 116, 190, 310, 428
MflI RGATCY 2 cut(s) 118, 367
MhlI GDGCHC 1 cut(s) 403
MluCI AATT 4 cut(s) 237, 257, 351, 382
MlyI GAGTC 1 cut(s) 123
MseI TTAA 1 cut(s) 380
MslI CAYNNNNRTG 2 cut(s) 406, 426
MspI CCGG 1 cut(s) 152
Mva1269I GAATGC 1 cut(s) 307
MwoI GCNNNNNNNGC 1 cut(s) 314
NdeII GATC 4 cut(s) 17, 118, 243, 367
NlaIII CATG 2 cut(s) 64, 136
NmeAIII GCCGAG 1 cut(s) 338
PctI GAATGC 1 cut(s) 307
PfeI GAWTC 1 cut(s) 92
PkrI GCNGC 3 cut(s) 139, 276, 307
PleI GAGTC 1 cut(s) 123
PpsI GAGTC 1 cut(s) 123
PstI CTGCAG 1 cut(s) 376
PsuI RGATCY 2 cut(s) 118, 367
RsaI GTAC 1 cut(s) 270
RsaNI GTAC 1 cut(s) 269
RseI CAYNNNNRTG 2 cut(s) 406, 426
SaqAI TTAA 1 cut(s) 380
SatI GCNGC 3 cut(s) 138, 275, 306
Sau3AI GATC 4 cut(s) 17, 118, 243, 367
ScaI AGTACT 1 cut(s) 270
SchI GAGTC 1 cut(s) 123
SduI GDGCHC 1 cut(s) 403
SetI ASST 5 cut(s) 25, 37, 283, 322, 330
SfaNI GCATC 2 cut(s) 240, 300
SfcI CTRYAG 2 cut(s) 30, 372
SmiMI CAYNNNNRTG 2 cut(s) 406, 426
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
Sse9I AATT 4 cut(s) 237, 257, 351, 382
TaaI ACNGT 3 cut(s) 56, 67, 221
TaiI ACGT 1 cut(s) 283
TaqI TCGA 3 cut(s) 127, 246, 390
TasI AATT 4 cut(s) 237, 257, 351, 382
TatI WGTACW 1 cut(s) 268
TfiI GAWTC 1 cut(s) 92
Tru1I TTAA 1 cut(s) 380
Tru9I TTAA 1 cut(s) 380
TseI GCWGC 3 cut(s) 137, 274, 305
TspDTI ATGAA 4 cut(s) 62, 190, 357, 459
TspGWI ACGGA 1 cut(s) 418
VneI GTGCAC 1 cut(s) 399
XapI RAATTY 1 cut(s) 382
ZrmI AGTACT 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.